Wall clock time and date at job start Tue Mar 31 2020 22:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 113.99940 * 2 1 4 4 C 1.53011 * 109.47293 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.46792 * 64.17128 * 4 3 2 6 6 C 1.46892 * 110.99939 * 196.17220 * 5 4 3 7 7 C 1.53003 * 109.47351 * 66.04268 * 6 5 4 8 8 C 1.50703 * 109.47453 * 180.02562 * 7 6 5 9 9 O 1.21282 * 119.99700 * 0.02562 * 8 7 6 10 10 N 1.34769 * 120.00187 * 180.02562 * 8 7 6 11 11 C 1.46506 * 120.00054 * 359.97438 * 10 8 7 12 12 C 1.46500 * 120.00314 * 180.02562 * 10 8 7 13 13 C 1.50703 * 109.46622 * 269.99871 * 12 10 8 14 14 H 1.08000 * 120.00275 * 359.97438 * 13 12 10 15 15 C 1.37878 * 119.99441 * 179.97438 * 13 12 10 16 16 N 1.31514 * 120.00180 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99694 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47403 * 180.02562 * 17 15 13 19 19 H 1.48500 * 109.47655 * 300.00526 * 17 15 13 20 20 H 1.48503 * 109.47057 * 60.00582 * 17 15 13 21 21 C 1.46905 * 111.00171 * 72.21641 * 5 4 3 22 22 C 1.52990 * 109.47025 * 199.93807 * 21 5 4 23 23 H 1.08993 * 109.64240 * 305.13506 * 22 21 5 24 24 C 1.53021 * 109.64341 * 65.55743 * 22 21 5 25 25 C 1.50068 * 110.14840 * 169.11988 * 24 22 21 26 26 C 1.29446 * 124.07545 * 342.86516 * 25 24 22 27 27 C 1.50064 * 124.07540 * 0.49108 * 26 25 24 28 28 C 1.53041 * 110.14048 * 342.83299 * 27 26 25 29 29 H 1.09003 * 109.46929 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47364 * 300.00346 * 1 2 3 31 31 H 1.08999 * 109.46641 * 60.00446 * 1 2 3 32 32 H 1.09005 * 109.47507 * 59.99817 * 3 2 1 33 33 H 1.08997 * 109.47130 * 299.99489 * 3 2 1 34 34 H 1.09000 * 109.46889 * 304.17644 * 4 3 2 35 35 H 1.08996 * 109.47159 * 184.16831 * 4 3 2 36 36 H 1.09005 * 109.47419 * 306.04968 * 6 5 4 37 37 H 1.08995 * 109.47577 * 186.04661 * 6 5 4 38 38 H 1.09002 * 109.46503 * 60.00493 * 7 6 5 39 39 H 1.08995 * 109.47101 * 300.00685 * 7 6 5 40 40 H 1.09001 * 109.47188 * 270.00779 * 11 10 8 41 41 H 1.09007 * 109.46736 * 30.00549 * 11 10 8 42 42 H 1.08996 * 109.47191 * 150.00280 * 11 10 8 43 43 H 1.08995 * 109.47305 * 149.99829 * 12 10 8 44 44 H 1.08999 * 109.47048 * 29.99019 * 12 10 8 45 45 H 0.97001 * 119.99852 * 179.97438 * 16 15 13 46 46 H 1.09001 * 109.47034 * 319.94235 * 21 5 4 47 47 H 1.08997 * 109.46802 * 79.93497 * 21 5 4 48 48 H 1.09003 * 109.36016 * 289.32350 * 24 22 21 49 49 H 1.09000 * 109.36273 * 49.04675 * 24 22 21 50 50 H 1.07998 * 117.96515 * 162.89063 * 25 24 22 51 51 H 1.08005 * 117.96324 * 180.47094 * 26 25 24 52 52 H 1.08999 * 109.35538 * 103.05562 * 27 26 25 53 53 H 1.09001 * 109.36118 * 222.77674 * 27 26 25 54 54 H 1.08998 * 109.65820 * 289.77743 * 28 27 26 55 55 H 1.08997 * 109.63582 * 169.13212 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9765 0.5442 -1.2457 6 6 5.3601 0.0648 -1.1303 7 6 5.4246 -1.0634 -0.0987 8 6 6.8443 -1.5549 0.0202 9 8 7.7185 -1.0520 -0.6535 10 7 7.1424 -2.5532 0.8751 11 6 6.0865 -3.1602 1.6892 12 6 8.5226 -3.0306 0.9911 13 6 8.7528 -4.1460 0.0042 14 1 7.9511 -4.4674 -0.6442 15 6 9.9869 -4.7562 -0.0708 16 7 10.9630 -4.3651 0.7191 17 14 10.2722 -6.1392 -1.2936 18 1 11.6712 -6.6232 -1.1761 19 1 9.3368 -7.2559 -1.0051 20 1 10.0352 -5.6385 -2.6714 21 6 3.8291 1.4569 -2.3874 22 6 3.8099 0.6494 -3.6867 23 1 4.7006 0.0237 -3.7423 24 6 2.5592 -0.2314 -3.7265 25 6 2.3878 -0.8242 -5.0944 26 6 2.9809 -0.3813 -6.1563 27 6 3.9310 0.7802 -6.1661 28 6 3.7692 1.6042 -4.8866 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 3.8518 0.5807 0.8511 35 1 3.9786 2.1777 0.0753 36 1 6.0036 0.8851 -0.8121 37 1 5.6976 -0.3076 -2.0975 38 1 4.7812 -1.8837 -0.4169 39 1 5.0872 -0.6910 0.8685 40 1 6.0011 -2.6223 2.6334 41 1 5.1386 -3.1067 1.1535 42 1 6.3340 -4.2033 1.8863 43 1 8.6960 -3.3986 2.0023 44 1 9.2095 -2.2111 0.7798 45 1 11.8311 -4.7947 0.6666 46 1 2.8960 2.0120 -2.2907 47 1 4.6665 2.1544 -2.4054 48 1 2.6587 -1.0335 -2.9951 49 1 1.6844 0.3720 -3.4842 50 1 1.7282 -1.6729 -5.1996 51 1 2.7797 -0.8789 -7.0936 52 1 4.9541 0.4096 -6.2306 53 1 3.7206 1.4120 -7.0291 54 1 2.8134 2.1277 -4.9061 55 1 4.5836 2.3245 -4.8094 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362252650.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:16 Heat of formation + Delta-G solvation = -92.883234 kcal Electronic energy + Delta-G solvation = -30747.365268 eV Core-core repulsion = 26783.519863 eV Total energy + Delta-G solvation = -3963.845405 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.83207 -40.02983 -38.80073 -37.58154 -36.55689 -34.75143 -33.25460 -32.34510 -31.55943 -30.25564 -29.28954 -27.32629 -27.03276 -26.34379 -25.06971 -23.93831 -23.62923 -22.30237 -21.04119 -19.91488 -18.75997 -18.69523 -17.98313 -17.35081 -17.09434 -17.06369 -16.79027 -16.65022 -16.31143 -15.96384 -15.52540 -15.37440 -15.17827 -14.87185 -14.50695 -14.30221 -14.10104 -14.04594 -13.71050 -13.55830 -13.47881 -13.43623 -13.23393 -13.16800 -13.01249 -12.88442 -12.78103 -12.61365 -12.53200 -12.45654 -12.20075 -12.19242 -11.94446 -11.73090 -11.64317 -11.36300 -11.11600 -10.97736 -10.64832 -10.58042 -10.38137 -9.80052 -9.40802 -9.19021 -8.22865 -6.37963 1.35646 1.40142 1.47227 1.47506 1.85695 2.29809 2.42768 2.93030 3.06192 3.08169 3.76018 3.84372 3.87675 3.97544 4.01979 4.13317 4.26498 4.29625 4.35748 4.43421 4.46647 4.52277 4.56198 4.59585 4.63363 4.65103 4.69839 4.71820 4.73904 4.74516 4.82261 4.89045 4.95472 4.96704 4.96805 4.99482 5.01687 5.05765 5.06907 5.11304 5.15918 5.22861 5.31536 5.42192 5.54679 5.56216 5.84292 5.84858 6.06233 6.09082 6.14998 6.18575 6.49696 6.69232 6.80450 7.27854 7.49925 8.84016 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009657 B = 0.002993 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2898.701211 B = 9353.081942 C =10997.468025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.396 6.396 3 C 0.071 3.929 4 C 0.044 3.956 5 N -0.526 5.526 6 C 0.084 3.916 7 C -0.112 4.112 8 C 0.494 3.506 9 O -0.601 6.601 10 N -0.612 5.612 11 C 0.080 3.920 12 C 0.259 3.741 13 C -0.545 4.545 14 H 0.052 0.948 15 C 0.007 3.993 16 N -0.929 5.929 17 Si 0.967 3.033 18 H -0.276 1.276 19 H -0.260 1.260 20 H -0.278 1.278 21 C 0.062 3.938 22 C -0.081 4.081 23 H 0.047 0.953 24 C -0.063 4.063 25 C -0.163 4.163 26 C -0.170 4.170 27 C -0.093 4.093 28 C -0.111 4.111 29 H 0.086 0.914 30 H 0.047 0.953 31 H 0.044 0.956 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.083 0.917 35 H 0.059 0.941 36 H 0.025 0.975 37 H 0.059 0.941 38 H 0.108 0.892 39 H 0.112 0.888 40 H 0.071 0.929 41 H 0.092 0.908 42 H 0.064 0.936 43 H 0.023 0.977 44 H -0.003 1.003 45 H 0.268 0.732 46 H 0.091 0.909 47 H 0.032 0.968 48 H 0.066 0.934 49 H 0.075 0.925 50 H 0.104 0.896 51 H 0.106 0.894 52 H 0.062 0.938 53 H 0.084 0.916 54 H 0.075 0.925 55 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.826 13.468 -4.863 29.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.315 6.315 3 C -0.006 4.006 4 C -0.083 4.083 5 N -0.250 5.250 6 C -0.044 4.044 7 C -0.152 4.152 8 C 0.283 3.717 9 O -0.483 6.483 10 N -0.343 5.343 11 C -0.062 4.062 12 C 0.138 3.862 13 C -0.583 4.583 14 H 0.070 0.930 15 C -0.191 4.191 16 N -0.568 5.568 17 Si 0.791 3.209 18 H -0.201 1.201 19 H -0.184 1.184 20 H -0.204 1.204 21 C -0.065 4.065 22 C -0.100 4.100 23 H 0.065 0.935 24 C -0.100 4.100 25 C -0.181 4.181 26 C -0.188 4.188 27 C -0.129 4.129 28 C -0.148 4.148 29 H 0.104 0.896 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.101 0.899 35 H 0.077 0.923 36 H 0.044 0.956 37 H 0.078 0.922 38 H 0.126 0.874 39 H 0.130 0.870 40 H 0.089 0.911 41 H 0.110 0.890 42 H 0.083 0.917 43 H 0.041 0.959 44 H 0.015 0.985 45 H 0.076 0.924 46 H 0.109 0.891 47 H 0.051 0.949 48 H 0.085 0.915 49 H 0.094 0.906 50 H 0.122 0.878 51 H 0.124 0.876 52 H 0.080 0.920 53 H 0.102 0.898 54 H 0.093 0.907 55 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -25.398 13.098 -5.199 29.045 hybrid contribution 1.243 -0.085 -0.376 1.301 sum -24.155 13.013 -5.574 27.998 Atomic orbital electron populations 1.22813 0.80646 1.03104 1.00270 1.87980 1.20112 1.28006 1.95388 1.22575 0.92371 0.84962 1.00671 1.22324 0.94641 0.98561 0.92781 1.61899 1.20267 1.38981 1.03828 1.21580 0.88577 0.95702 0.98581 1.21532 0.91060 1.00339 1.02226 1.21401 0.92027 0.79398 0.78829 1.90624 1.51901 1.59650 1.46129 1.48202 1.10427 1.34975 1.40666 1.21917 0.90195 0.98866 0.95263 1.18733 0.78541 0.93030 0.95910 1.21693 0.97551 1.18275 1.20821 0.92990 1.25869 0.95387 1.00041 0.97853 1.70045 1.03444 1.43394 1.39962 0.85477 0.77708 0.78989 0.78703 1.20133 1.18396 1.20391 1.22219 1.01324 0.93263 0.89703 1.21150 0.98199 0.96769 0.93896 0.93495 1.20225 0.97068 0.98861 0.93877 1.22324 1.00523 1.00069 0.95227 1.22188 0.99164 0.98978 0.98497 1.20466 0.98223 0.95573 0.98685 1.21612 1.02486 0.97299 0.93448 0.89564 0.93484 0.93761 0.91663 0.92738 0.89896 0.92252 0.95626 0.92219 0.87399 0.86974 0.91070 0.88973 0.91674 0.95880 0.98528 0.92353 0.89080 0.94930 0.91515 0.90645 0.87828 0.87611 0.91970 0.89797 0.90673 0.91504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.40 -7.30 10.64 -148.98 -1.58 -8.88 16 3 C 0.07 1.03 6.08 71.99 0.44 1.46 16 4 C 0.04 0.78 5.22 86.31 0.45 1.23 16 5 N -0.53 -11.41 4.01 -896.23 -3.59 -15.01 16 6 C 0.08 2.43 4.07 86.31 0.35 2.79 16 7 C -0.11 -3.33 4.22 29.85 0.13 -3.20 16 8 C 0.49 21.40 7.67 87.66 0.67 22.07 16 9 O -0.60 -32.27 15.56 -3.04 -0.05 -32.32 16 10 N -0.61 -27.07 2.86 -851.12 -2.43 -29.50 16 11 C 0.08 2.50 10.24 127.77 1.31 3.81 16 12 C 0.26 14.53 5.16 85.63 0.44 14.97 16 13 C -0.54 -32.52 9.39 25.60 0.24 -32.28 16 14 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 15 C 0.01 0.44 5.46 84.65 0.46 0.90 16 16 N -0.93 -57.48 13.29 21.45 0.28 -57.20 16 17 Si 0.97 46.06 29.54 68.60 2.03 48.08 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 19 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 20 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 21 C 0.06 1.19 4.22 86.30 0.36 1.55 16 22 C -0.08 -1.68 2.29 -10.66 -0.02 -1.70 16 23 H 0.05 1.26 6.67 -2.39 -0.02 1.25 16 24 C -0.06 -1.27 5.21 29.66 0.15 -1.12 16 25 C -0.16 -3.27 9.80 27.03 0.27 -3.00 16 26 C -0.17 -3.26 9.80 27.03 0.27 -3.00 16 27 C -0.09 -1.65 6.12 29.66 0.18 -1.47 16 28 C -0.11 -1.89 5.31 30.74 0.16 -1.73 16 29 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.04 0.47 8.14 -2.39 -0.02 0.46 16 32 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 33 H 0.05 0.70 6.45 -2.39 -0.02 0.68 16 34 H 0.08 1.53 5.93 -2.39 -0.01 1.51 16 35 H 0.06 0.92 8.05 -2.39 -0.02 0.91 16 36 H 0.03 0.80 8.08 -2.38 -0.02 0.78 16 37 H 0.06 2.03 6.54 -2.39 -0.02 2.01 16 38 H 0.11 3.02 7.40 -2.39 -0.02 3.01 16 39 H 0.11 2.72 6.24 -2.39 -0.01 2.71 16 40 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.09 2.30 6.44 -2.38 -0.02 2.29 16 42 H 0.06 2.15 8.07 -2.39 -0.02 2.13 16 43 H 0.02 1.31 8.07 -2.39 -0.02 1.29 16 44 H 0.00 -0.22 7.42 -2.39 -0.02 -0.24 16 45 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 46 H 0.09 1.37 6.17 -2.39 -0.01 1.36 16 47 H 0.03 0.65 8.00 -2.39 -0.02 0.63 16 48 H 0.07 1.59 8.07 -2.39 -0.02 1.57 16 49 H 0.08 1.34 8.07 -2.39 -0.02 1.32 16 50 H 0.10 1.91 8.06 -2.91 -0.02 1.88 16 51 H 0.11 1.80 8.06 -2.91 -0.02 1.78 16 52 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 53 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 54 H 0.07 1.10 8.12 -2.39 -0.02 1.08 16 55 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -76.27 429.67 2.59 -73.68 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 0.83 Total: 18.26 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 7.11 Total: 2.88 kcal Atomic # 7 Polarization: -95.97 SS G_CDS: -5.74 Total: -101.71 kcal Atomic # 8 Polarization: -39.57 SS G_CDS: -1.63 Total: -41.20 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.08 kcal Total: -76.27 2.59 -73.68 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362252650.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.199 kcal (2) G-P(sol) polarization free energy of solvation -76.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds