Wall clock time and date at job start Tue Mar 31 2020 22:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42905 * 114.00178 * 2 1 4 4 C 1.53001 * 109.47067 * 180.02562 * 3 2 1 5 5 N 1.46899 * 109.46887 * 298.64001 * 4 3 2 6 6 C 1.46898 * 111.00052 * 163.39746 * 5 4 3 7 7 C 1.53004 * 109.46794 * 293.95281 * 6 5 4 8 8 C 1.50706 * 109.46908 * 180.02562 * 7 6 5 9 9 O 1.21278 * 120.00175 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99721 * 180.02562 * 8 7 6 11 11 C 1.46501 * 120.00002 * 359.97438 * 10 8 7 12 12 C 1.46502 * 119.99923 * 179.97438 * 10 8 7 13 13 C 1.50698 * 109.47174 * 89.99622 * 12 10 8 14 14 H 1.07994 * 120.00022 * 359.97438 * 13 12 10 15 15 C 1.37878 * 120.00062 * 179.97438 * 13 12 10 16 16 N 1.31508 * 120.00372 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 119.99849 * 0.02562 * 15 13 12 18 18 H 1.48492 * 109.47645 * 89.99322 * 17 15 13 19 19 H 1.48500 * 109.46861 * 209.99972 * 17 15 13 20 20 H 1.48507 * 109.47158 * 329.99544 * 17 15 13 21 21 C 1.46908 * 111.00161 * 287.34984 * 5 4 3 22 22 C 1.52993 * 109.47164 * 163.82865 * 21 5 4 23 23 H 1.09007 * 109.64446 * 55.06259 * 22 21 5 24 24 C 1.53016 * 109.64495 * 294.42345 * 22 21 5 25 25 C 1.50069 * 110.15200 * 190.87982 * 24 22 21 26 26 C 1.29444 * 124.07324 * 17.13102 * 25 24 22 27 27 C 1.50068 * 124.07596 * 359.53090 * 26 25 24 28 28 C 1.53023 * 110.14530 * 17.13210 * 27 26 25 29 29 H 1.09000 * 109.47213 * 60.00380 * 1 2 3 30 30 H 1.09007 * 109.47384 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47253 * 300.00225 * 1 2 3 32 32 H 1.09003 * 109.46653 * 299.99317 * 3 2 1 33 33 H 1.08995 * 109.47120 * 59.99370 * 3 2 1 34 34 H 1.08994 * 109.47493 * 58.64359 * 4 3 2 35 35 H 1.08996 * 109.46604 * 178.64539 * 4 3 2 36 36 H 1.08993 * 109.47495 * 53.95062 * 6 5 4 37 37 H 1.09002 * 109.47472 * 173.95827 * 6 5 4 38 38 H 1.09001 * 109.47253 * 299.99611 * 7 6 5 39 39 H 1.08994 * 109.47295 * 60.00027 * 7 6 5 40 40 H 1.08993 * 109.47593 * 90.00467 * 11 10 8 41 41 H 1.09005 * 109.47342 * 210.00402 * 11 10 8 42 42 H 1.09006 * 109.47350 * 330.00023 * 11 10 8 43 43 H 1.08998 * 109.47012 * 209.99745 * 12 10 8 44 44 H 1.08996 * 109.46938 * 329.99200 * 12 10 8 45 45 H 0.96998 * 120.00538 * 179.97438 * 16 15 13 46 46 H 1.09005 * 109.46809 * 283.82852 * 21 5 4 47 47 H 1.09000 * 109.46834 * 43.82694 * 21 5 4 48 48 H 1.08997 * 109.36129 * 311.08821 * 24 22 21 49 49 H 1.09007 * 109.35632 * 70.67258 * 24 22 21 50 50 H 1.08000 * 117.96669 * 197.15774 * 25 24 22 51 51 H 1.07995 * 117.96241 * 179.55310 * 26 25 24 52 52 H 1.09001 * 109.36055 * 256.92360 * 27 26 25 53 53 H 1.08995 * 109.24748 * 137.26467 * 27 26 25 54 54 H 1.09008 * 109.63971 * 190.87925 * 28 27 26 55 55 H 1.08997 * 109.82037 * 70.34855 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9716 0.4840 1.2146 6 6 5.3523 0.0015 1.0773 7 6 5.4100 -1.0777 -0.0057 8 6 6.8264 -1.5731 -0.1461 9 8 7.7033 -1.1084 0.5510 10 7 7.1187 -2.5319 -1.0471 11 6 6.0595 -3.0928 -1.8896 12 6 8.4956 -3.0131 -1.1841 13 6 8.7166 -4.1756 -0.2509 14 1 7.9121 -4.5211 0.3812 15 6 9.9460 -4.7981 -0.2042 16 7 10.1391 -5.8122 0.6104 17 14 11.3379 -4.1999 -1.2971 18 1 12.1161 -3.1572 -0.5816 19 1 12.2287 -5.3398 -1.6324 20 1 10.7751 -3.6274 -2.5465 21 6 3.8294 1.3434 2.3976 22 6 3.8986 0.4855 3.6624 23 1 4.8197 -0.0975 3.6600 24 6 2.6910 -0.4529 3.7143 25 6 2.6013 -1.1061 5.0623 26 6 3.2166 -0.6784 6.1179 27 6 4.1134 0.5246 6.1387 28 6 3.8640 1.3895 4.9012 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6887 1.8463 -0.8901 33 1 1.6885 1.8464 0.8899 34 1 3.8551 0.6230 -0.8784 35 1 3.9787 2.1801 -0.0249 36 1 6.0011 0.8315 0.7980 37 1 5.6868 -0.4178 2.0262 38 1 4.7612 -1.9079 0.2736 39 1 5.0756 -0.6585 -0.9546 40 1 5.9785 -2.5105 -2.8073 41 1 6.3003 -4.1271 -2.1356 42 1 5.1115 -3.0584 -1.3525 43 1 8.6679 -3.3340 -2.2114 44 1 9.1879 -2.2094 -0.9336 45 1 11.0038 -6.2504 0.6430 46 1 4.6349 2.0777 2.4121 47 1 2.8693 1.8579 2.3595 48 1 1.7814 0.1182 3.5284 49 1 2.7965 -1.2202 2.9472 50 1 1.9856 -1.9882 5.1577 51 1 3.0760 -1.2212 7.0408 52 1 5.1538 0.1996 6.1487 53 1 3.9091 1.1096 7.0354 54 1 4.6418 2.1491 4.8223 55 1 2.8886 1.8702 4.9768 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362252651.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:20 Heat of formation + Delta-G solvation = -89.545647 kcal Electronic energy + Delta-G solvation = -30787.949469 eV Core-core repulsion = 26824.248793 eV Total energy + Delta-G solvation = -3963.700676 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.87789 -40.05222 -38.80694 -37.58147 -36.60259 -34.72391 -33.28402 -32.40848 -31.57372 -30.62221 -29.49777 -27.37043 -27.03231 -26.31529 -24.88486 -23.94908 -23.46876 -22.30672 -21.01610 -19.92423 -19.15245 -18.76497 -18.02648 -17.36930 -17.11886 -17.04878 -16.82667 -16.64890 -16.33411 -15.85236 -15.56282 -15.38980 -15.19572 -14.82631 -14.64327 -14.41994 -14.22444 -14.08459 -13.75843 -13.63767 -13.57854 -13.48392 -13.28788 -13.18356 -13.03952 -12.89416 -12.77123 -12.60310 -12.48071 -12.42716 -12.22033 -12.02390 -11.94289 -11.75127 -11.64461 -11.35386 -11.12499 -10.98343 -10.83864 -10.64415 -10.37828 -9.81401 -9.38409 -9.17881 -8.34413 -6.39812 1.31934 1.36376 1.45038 1.45838 1.81041 2.29545 2.31027 2.90994 2.99818 3.09296 3.74384 3.82608 3.86437 3.96510 4.00621 4.12342 4.25844 4.29033 4.35123 4.41808 4.45599 4.51535 4.55358 4.58213 4.63065 4.64643 4.67090 4.69891 4.72049 4.74780 4.79144 4.84042 4.88546 4.92697 4.96352 4.97044 4.99376 5.00514 5.04955 5.06576 5.09665 5.15139 5.30252 5.40503 5.45661 5.53938 5.62993 5.82957 6.09269 6.13853 6.18557 6.23869 6.50494 6.61546 6.71093 7.20889 7.43197 8.82803 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010301 B = 0.002956 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2717.465544 B = 9470.278505 C =11028.825722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.395 6.395 3 C 0.070 3.930 4 C 0.045 3.955 5 N -0.527 5.527 6 C 0.083 3.917 7 C -0.113 4.113 8 C 0.496 3.504 9 O -0.598 6.598 10 N -0.609 5.609 11 C 0.078 3.922 12 C 0.223 3.777 13 C -0.538 4.538 14 H 0.026 0.974 15 C 0.009 3.991 16 N -0.946 5.946 17 Si 0.951 3.049 18 H -0.276 1.276 19 H -0.274 1.274 20 H -0.237 1.237 21 C 0.064 3.936 22 C -0.083 4.083 23 H 0.045 0.955 24 C -0.063 4.063 25 C -0.165 4.165 26 C -0.170 4.170 27 C -0.093 4.093 28 C -0.109 4.109 29 H 0.047 0.953 30 H 0.085 0.915 31 H 0.043 0.957 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.084 0.916 35 H 0.061 0.939 36 H 0.029 0.971 37 H 0.057 0.943 38 H 0.103 0.897 39 H 0.117 0.883 40 H 0.081 0.919 41 H 0.064 0.936 42 H 0.087 0.913 43 H 0.051 0.949 44 H 0.018 0.982 45 H 0.269 0.731 46 H 0.034 0.966 47 H 0.091 0.909 48 H 0.077 0.923 49 H 0.064 0.936 50 H 0.102 0.898 51 H 0.105 0.895 52 H 0.061 0.939 53 H 0.085 0.915 54 H 0.068 0.932 55 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.911 18.627 -0.244 29.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.314 6.314 3 C -0.007 4.007 4 C -0.082 4.082 5 N -0.251 5.251 6 C -0.046 4.046 7 C -0.153 4.153 8 C 0.286 3.714 9 O -0.479 6.479 10 N -0.340 5.340 11 C -0.064 4.064 12 C 0.101 3.899 13 C -0.577 4.577 14 H 0.044 0.956 15 C -0.189 4.189 16 N -0.586 5.586 17 Si 0.773 3.227 18 H -0.202 1.202 19 H -0.199 1.199 20 H -0.160 1.160 21 C -0.063 4.063 22 C -0.102 4.102 23 H 0.064 0.936 24 C -0.100 4.100 25 C -0.183 4.183 26 C -0.188 4.188 27 C -0.129 4.129 28 C -0.147 4.147 29 H 0.066 0.934 30 H 0.103 0.897 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.079 0.921 36 H 0.047 0.953 37 H 0.076 0.924 38 H 0.121 0.879 39 H 0.135 0.865 40 H 0.099 0.901 41 H 0.083 0.917 42 H 0.105 0.895 43 H 0.069 0.931 44 H 0.036 0.964 45 H 0.078 0.922 46 H 0.052 0.948 47 H 0.109 0.891 48 H 0.095 0.905 49 H 0.082 0.918 50 H 0.120 0.880 51 H 0.123 0.877 52 H 0.080 0.920 53 H 0.103 0.897 54 H 0.086 0.914 55 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -22.553 18.145 0.194 28.946 hybrid contribution 1.389 0.169 0.097 1.402 sum -21.164 18.313 0.291 27.989 Atomic orbital electron populations 1.22809 0.80712 1.03047 1.00272 1.87992 1.20040 1.28028 1.95384 1.22580 0.92464 0.84937 1.00675 1.22327 0.94597 0.97986 0.93317 1.61885 1.20653 1.39309 1.03263 1.21589 0.88720 0.96051 0.98204 1.21537 0.91114 1.00565 1.02042 1.21393 0.92036 0.79161 0.78853 1.90622 1.51486 1.60119 1.45721 1.47987 1.10223 1.37770 1.38003 1.21958 0.89960 0.99567 0.94905 1.19323 0.80929 0.93092 0.96581 1.21581 0.98082 1.14962 1.23028 0.95595 1.25894 1.01371 0.94605 0.96997 1.70054 1.25133 1.23902 1.39536 0.85676 0.78579 0.78260 0.80184 1.20200 1.19876 1.15993 1.22199 1.01509 0.93513 0.89082 1.21177 0.98238 0.96649 0.94148 0.93602 1.20215 0.97615 0.98210 0.93979 1.22327 1.00549 1.00044 0.95364 1.22199 0.99232 0.98890 0.98524 1.20466 0.98420 0.94993 0.99069 1.21599 1.02529 0.97304 0.93304 0.93410 0.89681 0.93808 0.91577 0.92854 0.89786 0.92100 0.95263 0.92443 0.87851 0.86521 0.90065 0.91707 0.89471 0.93141 0.96386 0.92248 0.94823 0.89054 0.90481 0.91755 0.87971 0.87673 0.92041 0.89681 0.91357 0.90602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.40 -7.32 10.59 -148.98 -1.58 -8.90 16 3 C 0.07 0.99 6.07 71.98 0.44 1.43 16 4 C 0.05 0.76 5.24 86.30 0.45 1.21 16 5 N -0.53 -11.37 3.99 -896.24 -3.58 -14.94 16 6 C 0.08 2.36 4.10 86.30 0.35 2.72 16 7 C -0.11 -3.29 4.22 29.85 0.13 -3.16 16 8 C 0.50 20.72 7.67 87.66 0.67 21.39 16 9 O -0.60 -30.84 15.56 -3.02 -0.05 -30.89 16 10 N -0.61 -25.52 2.86 -851.13 -2.43 -27.95 16 11 C 0.08 2.32 10.24 127.77 1.31 3.63 16 12 C 0.22 11.20 4.23 85.63 0.36 11.57 16 13 C -0.54 -32.69 9.94 25.60 0.25 -32.44 16 14 H 0.03 1.76 8.06 -2.91 -0.02 1.74 16 15 C 0.01 0.55 5.47 84.66 0.46 1.02 16 16 N -0.95 -61.19 13.96 21.45 0.30 -60.89 16 17 Si 0.95 45.36 27.47 68.60 1.88 47.24 16 18 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 19 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 20 H -0.24 -10.10 6.54 99.48 0.65 -9.45 16 21 C 0.06 1.22 4.20 86.30 0.36 1.59 16 22 C -0.08 -1.78 2.26 -10.66 -0.02 -1.81 16 23 H 0.05 1.28 6.46 -2.38 -0.02 1.27 16 24 C -0.06 -1.35 5.22 29.66 0.15 -1.20 16 25 C -0.16 -3.56 9.80 27.04 0.27 -3.30 16 26 C -0.17 -3.52 9.80 27.04 0.27 -3.25 16 27 C -0.09 -1.74 6.12 29.66 0.18 -1.56 16 28 C -0.11 -1.93 5.30 30.74 0.16 -1.77 16 29 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.08 1.02 8.14 -2.38 -0.02 1.01 16 31 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.05 0.67 6.54 -2.39 -0.02 0.65 16 34 H 0.08 1.45 5.93 -2.39 -0.01 1.44 16 35 H 0.06 0.89 8.04 -2.39 -0.02 0.87 16 36 H 0.03 0.88 8.08 -2.39 -0.02 0.86 16 37 H 0.06 1.97 6.31 -2.39 -0.02 1.96 16 38 H 0.10 2.96 7.40 -2.39 -0.02 2.95 16 39 H 0.12 2.66 6.24 -2.39 -0.01 2.64 16 40 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.06 2.06 8.07 -2.38 -0.02 2.04 16 42 H 0.09 2.17 6.44 -2.38 -0.02 2.15 16 43 H 0.05 2.31 7.13 -2.39 -0.02 2.29 16 44 H 0.02 0.97 6.85 -2.39 -0.02 0.95 16 45 H 0.27 16.09 8.31 -92.71 -0.77 15.31 16 46 H 0.03 0.65 8.05 -2.38 -0.02 0.64 16 47 H 0.09 1.38 6.27 -2.39 -0.01 1.37 16 48 H 0.08 1.45 8.07 -2.39 -0.02 1.43 16 49 H 0.06 1.63 8.07 -2.38 -0.02 1.61 16 50 H 0.10 2.07 8.06 -2.91 -0.02 2.05 16 51 H 0.11 1.95 8.06 -2.91 -0.02 1.93 16 52 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 53 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 54 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 55 H 0.08 1.14 8.13 -2.39 -0.02 1.12 16 Total: -1.00 -79.42 425.77 2.37 -77.05 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: 0.78 Total: 21.60 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: 7.05 Total: -2.33 kcal Atomic # 7 Polarization: -98.08 SS G_CDS: -5.71 Total: -103.79 kcal Atomic # 8 Polarization: -38.16 SS G_CDS: -1.62 Total: -39.78 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.88 Total: 47.24 kcal Total: -79.42 2.37 -77.05 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362252651.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.498 kcal (2) G-P(sol) polarization free energy of solvation -79.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds