Wall clock time and date at job start Tue Mar 31 2020 22:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46898 * 110.99938 * 2 1 4 4 C 1.46897 * 110.99802 * 123.95711 * 2 1 3 5 5 C 1.53008 * 109.46746 * 170.00285 * 4 2 1 6 6 C 1.52997 * 109.46722 * 179.97438 * 5 4 2 7 7 N 1.46497 * 109.47062 * 179.97438 * 6 5 4 8 8 C 1.46504 * 120.00098 * 89.99948 * 7 6 5 9 9 C 1.50696 * 109.47118 * 96.07039 * 8 7 6 10 10 H 1.08001 * 120.00502 * 359.97438 * 9 8 7 11 11 C 1.37876 * 119.99790 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00148 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 120.00066 * 0.02562 * 11 9 8 14 14 H 1.48503 * 109.47233 * 90.00169 * 13 11 9 15 15 H 1.48509 * 109.47190 * 209.99647 * 13 11 9 16 16 H 1.48498 * 109.47202 * 329.99899 * 13 11 9 17 17 C 1.34782 * 120.00213 * 270.00132 * 7 6 5 18 18 O 1.21274 * 119.99890 * 3.73593 * 17 7 6 19 19 C 1.50696 * 120.00081 * 183.73677 * 17 7 6 20 20 H 1.09002 * 109.74063 * 47.77391 * 19 17 7 21 21 C 1.53577 * 109.74110 * 168.48427 * 19 17 7 22 22 C 1.52954 * 109.42092 * 191.76192 * 21 19 17 23 23 C 1.52334 * 110.21732 * 281.66614 * 22 21 19 24 24 C 1.53448 * 109.56252 * 315.59670 * 23 22 21 25 25 C 1.53901 * 108.28590 * 114.18378 * 24 23 22 26 26 C 1.51214 * 107.17512 * 290.68015 * 25 24 23 27 27 O 1.20758 * 120.12815 * 251.65022 * 26 25 24 28 28 C 1.50231 * 119.73799 * 71.62926 * 26 25 24 29 29 H 1.08990 * 109.47023 * 296.04370 * 1 2 3 30 30 H 1.08999 * 109.46614 * 56.04649 * 1 2 3 31 31 H 1.09001 * 109.46571 * 176.04120 * 1 2 3 32 32 H 1.09000 * 109.47367 * 183.95336 * 3 2 1 33 33 H 1.08998 * 109.47329 * 303.95853 * 3 2 1 34 34 H 1.09000 * 109.46814 * 63.95785 * 3 2 1 35 35 H 1.08996 * 109.47439 * 50.00450 * 4 2 1 36 36 H 1.08994 * 109.46878 * 289.99644 * 4 2 1 37 37 H 1.09003 * 109.46880 * 299.99243 * 5 4 2 38 38 H 1.08990 * 109.47263 * 59.99498 * 5 4 2 39 39 H 1.08995 * 109.47276 * 299.99778 * 6 5 4 40 40 H 1.09004 * 109.47641 * 60.00017 * 6 5 4 41 41 H 1.09006 * 109.46866 * 216.06986 * 8 7 6 42 42 H 1.09002 * 109.46982 * 336.06682 * 8 7 6 43 43 H 0.97002 * 120.00504 * 180.02562 * 12 11 9 44 44 H 1.09004 * 109.47508 * 311.74015 * 21 19 17 45 45 H 1.08993 * 109.48104 * 71.77123 * 21 19 17 46 46 H 1.09000 * 109.34675 * 161.43302 * 22 21 19 47 47 H 1.08999 * 109.22550 * 41.81333 * 22 21 19 48 48 H 1.09006 * 109.45495 * 195.57487 * 23 22 21 49 49 H 1.08997 * 109.44270 * 75.62188 * 23 22 21 50 50 H 1.09004 * 109.70274 * 354.48223 * 24 23 22 51 51 H 1.09007 * 109.70179 * 233.88124 * 24 23 22 52 52 H 1.09002 * 109.91450 * 171.26602 * 25 24 23 53 53 H 1.08997 * 109.91688 * 50.09869 * 25 24 23 54 54 H 1.08999 * 109.40352 * 127.26141 * 28 26 25 55 55 H 1.09002 * 109.33589 * 7.46812 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.5045 -0.9553 0.9703 6 6 4.0529 -1.7526 2.1554 7 7 5.4977 -1.9344 1.9950 8 6 6.4262 -0.9445 2.5465 9 6 6.9052 -1.4042 3.8994 10 1 6.5529 -2.3398 4.3078 11 6 7.7924 -0.6297 4.6162 12 7 8.2109 -1.0310 5.7967 13 14 8.4002 0.9897 3.9108 14 1 7.4896 2.0853 4.3304 15 1 9.7703 1.2654 4.4131 16 1 8.4239 0.9061 2.4284 17 6 5.9727 -3.0123 1.3400 18 8 5.2040 -3.7962 0.8248 19 6 7.4590 -3.2435 1.2477 20 1 7.9116 -3.1258 2.2323 21 6 7.7319 -4.6582 0.7160 22 6 9.2131 -4.9932 0.8989 23 6 10.0431 -4.3194 -0.1862 24 6 9.3532 -4.4965 -1.5453 25 6 8.9072 -3.1108 -2.0448 26 6 7.7820 -2.6525 -1.1445 27 8 6.6486 -2.6193 -1.5600 28 6 8.0796 -2.2392 0.2688 29 1 -0.3633 0.4512 0.9232 30 1 -0.3632 0.5740 -0.8525 31 1 -0.3632 -1.0253 -0.0710 32 1 3.0828 1.3433 -0.0709 33 1 1.5898 1.9164 -0.8524 34 1 1.7045 1.8723 0.9233 35 1 1.5091 -1.7407 1.1755 36 1 1.7976 -0.2248 2.0627 37 1 3.7025 -1.4966 0.0450 38 1 3.9910 0.0193 0.9322 39 1 3.8550 -1.2111 3.0803 40 1 3.5665 -2.7274 2.1938 41 1 7.2795 -0.8343 1.8771 42 1 5.9174 0.0142 2.6476 43 1 8.8348 -0.4859 6.3013 44 1 7.1259 -5.3770 1.2676 45 1 7.4768 -4.7041 -0.3426 46 1 9.3490 -6.0731 0.8393 47 1 9.5426 -4.6413 1.8764 48 1 11.0336 -4.7732 -0.2200 49 1 10.1381 -3.2567 0.0370 50 1 8.4837 -5.1445 -1.4344 51 1 10.0515 -4.9365 -2.2574 52 1 8.5538 -3.1829 -3.0734 53 1 9.7393 -2.4093 -1.9854 54 1 7.6618 -1.2494 0.4522 55 1 9.1592 -2.2096 0.4164 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362633141.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:30 Heat of formation + Delta-G solvation = -88.691328 kcal Electronic energy + Delta-G solvation = -32214.966251 eV Core-core repulsion = 28251.302621 eV Total energy + Delta-G solvation = -3963.663630 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.96149 -40.26772 -38.70945 -37.87193 -36.90842 -34.86615 -34.29506 -32.97588 -32.06988 -29.82162 -28.52891 -28.05398 -27.65547 -26.14779 -24.55862 -24.04475 -22.78872 -21.84669 -21.31565 -20.53626 -19.41782 -19.05724 -17.96238 -17.42790 -17.12295 -16.72118 -16.55714 -16.43804 -16.26462 -16.01262 -15.74280 -15.34573 -15.08558 -14.99617 -14.88487 -14.65436 -14.51505 -14.31317 -13.84305 -13.52759 -13.37315 -13.28221 -13.25915 -13.10177 -12.81443 -12.70964 -12.67544 -12.65768 -12.49644 -12.41953 -12.34916 -12.22795 -11.95053 -11.89121 -11.68207 -11.57290 -11.53210 -11.24937 -11.19551 -10.79433 -10.44886 -10.32529 -9.42051 -9.34457 -8.27786 -6.34846 1.00500 1.40246 1.42184 1.51325 1.82504 2.24778 2.35285 2.99713 3.03793 3.13223 3.57212 3.73649 3.85554 3.86943 3.95845 4.02779 4.11967 4.16552 4.19293 4.22411 4.31824 4.37616 4.41160 4.46433 4.48129 4.54319 4.58453 4.60930 4.64268 4.69288 4.72922 4.73388 4.73832 4.88316 4.92198 4.95964 4.96799 5.04009 5.06680 5.09871 5.11487 5.16676 5.23797 5.29700 5.40914 5.45588 5.48252 5.60746 5.73478 6.01122 6.08419 6.21734 6.60659 6.62059 6.71539 7.26684 7.39623 8.88105 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.007707 B = 0.004935 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3632.219238 B = 5672.546971 C = 7948.592148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.568 5.568 3 C 0.022 3.978 4 C 0.066 3.934 5 C -0.110 4.110 6 C 0.120 3.880 7 N -0.598 5.598 8 C 0.210 3.790 9 C -0.536 4.536 10 H 0.030 0.970 11 C 0.026 3.974 12 N -0.938 5.938 13 Si 0.932 3.068 14 H -0.271 1.271 15 H -0.280 1.280 16 H -0.233 1.233 17 C 0.518 3.482 18 O -0.587 6.587 19 C -0.092 4.092 20 H 0.109 0.891 21 C -0.109 4.109 22 C -0.118 4.118 23 C -0.132 4.132 24 C -0.118 4.118 25 C -0.161 4.161 26 C 0.359 3.641 27 O -0.494 6.494 28 C -0.177 4.177 29 H 0.031 0.969 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.031 0.969 35 H 0.073 0.927 36 H 0.044 0.956 37 H 0.045 0.955 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.061 0.939 41 H 0.056 0.944 42 H 0.038 0.962 43 H 0.269 0.731 44 H 0.045 0.955 45 H 0.069 0.931 46 H 0.076 0.924 47 H 0.065 0.935 48 H 0.091 0.909 49 H 0.080 0.920 50 H 0.058 0.942 51 H 0.101 0.899 52 H 0.089 0.911 53 H 0.127 0.873 54 H 0.089 0.911 55 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.035 1.419 -13.993 14.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.292 5.292 3 C -0.126 4.126 4 C -0.062 4.062 5 C -0.149 4.149 6 C -0.003 4.003 7 N -0.328 5.328 8 C 0.089 3.911 9 C -0.575 4.575 10 H 0.048 0.952 11 C -0.173 4.173 12 N -0.577 5.577 13 Si 0.754 3.246 14 H -0.197 1.197 15 H -0.205 1.205 16 H -0.156 1.156 17 C 0.308 3.692 18 O -0.469 6.469 19 C -0.113 4.113 20 H 0.127 0.873 21 C -0.147 4.147 22 C -0.155 4.155 23 C -0.169 4.169 24 C -0.155 4.155 25 C -0.198 4.198 26 C 0.237 3.763 27 O -0.370 6.370 28 C -0.214 4.214 29 H 0.050 0.950 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.050 0.950 35 H 0.092 0.908 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.097 0.903 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.056 0.944 43 H 0.078 0.922 44 H 0.064 0.936 45 H 0.088 0.912 46 H 0.094 0.906 47 H 0.083 0.917 48 H 0.109 0.891 49 H 0.098 0.902 50 H 0.076 0.924 51 H 0.119 0.881 52 H 0.107 0.893 53 H 0.145 0.855 54 H 0.107 0.893 55 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.292 0.861 -14.748 14.776 hybrid contribution -0.375 0.936 1.518 1.822 sum -0.082 1.797 -13.230 13.352 Atomic orbital electron populations 1.22417 0.85879 1.02689 1.01223 1.61935 1.09225 1.14688 1.43352 1.22447 1.00748 0.88223 1.01172 1.21947 0.94094 0.98462 0.91713 1.21723 0.95578 0.99803 0.97824 1.21307 0.80572 1.00192 0.98272 1.47929 1.06980 1.23739 1.54144 1.19868 0.89717 0.88127 0.93429 1.21414 1.26918 1.06989 1.02146 0.95160 1.25686 0.95630 1.01384 0.94598 1.70042 1.33589 1.40272 1.13844 0.85949 0.78148 0.79376 0.81081 1.19657 1.20534 1.15594 1.20879 0.91793 0.79970 0.76561 1.90562 1.60489 1.47191 1.48611 1.21407 0.91198 0.97253 1.01446 0.87302 1.21844 0.98209 0.93539 1.01059 1.21503 0.92337 1.01529 1.00137 1.21968 0.99481 1.02286 0.93125 1.21960 1.01093 0.94448 0.97981 1.22640 0.98237 0.99987 0.98978 1.25184 0.89994 0.70860 0.90297 1.90456 1.26621 1.42915 1.76959 1.22654 1.05728 0.99885 0.93183 0.95027 0.90132 0.91290 0.92155 0.90063 0.95027 0.90818 0.93798 0.93608 0.91881 0.90284 0.92094 0.92634 0.94396 0.92222 0.93618 0.91234 0.90562 0.91662 0.89088 0.90162 0.92352 0.88066 0.89276 0.85489 0.89280 0.84620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.57 127.69 1.22 1.74 16 2 N -0.57 -15.00 5.02 -948.85 -4.76 -19.77 16 3 C 0.02 0.51 9.32 127.69 1.19 1.70 16 4 C 0.07 1.90 4.96 86.31 0.43 2.32 16 5 C -0.11 -3.80 5.46 30.60 0.17 -3.64 16 6 C 0.12 4.67 5.35 86.38 0.46 5.13 16 7 N -0.60 -25.78 2.47 -826.16 -2.04 -27.82 16 8 C 0.21 9.10 3.85 85.63 0.33 9.43 16 9 C -0.54 -27.86 8.80 25.60 0.23 -27.64 16 10 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 11 C 0.03 1.38 5.47 84.65 0.46 1.84 16 12 N -0.94 -53.81 13.96 21.45 0.30 -53.51 16 13 Si 0.93 38.19 27.47 68.60 1.88 40.07 16 14 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 15 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 16 H -0.23 -8.35 6.54 99.48 0.65 -7.70 16 17 C 0.52 22.90 6.08 87.65 0.53 23.43 16 18 O -0.59 -28.98 15.56 -3.01 -0.05 -29.03 16 19 C -0.09 -3.38 1.78 -11.23 -0.02 -3.40 16 20 H 0.11 4.38 6.60 -2.39 -0.02 4.36 16 21 C -0.11 -3.51 4.14 30.77 0.13 -3.39 16 22 C -0.12 -2.76 5.62 30.36 0.17 -2.59 16 23 C -0.13 -2.27 5.44 30.52 0.17 -2.10 16 24 C -0.12 -2.04 5.60 31.05 0.17 -1.86 16 25 C -0.16 -3.07 5.83 30.32 0.18 -2.90 16 26 C 0.36 10.70 4.29 29.12 0.12 10.82 16 27 O -0.49 -19.64 17.05 -1.44 -0.02 -19.66 16 28 C -0.18 -5.37 4.35 29.82 0.13 -5.24 16 29 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.08 1.39 8.12 -2.39 -0.02 1.37 16 31 H 0.07 1.37 8.12 -2.39 -0.02 1.35 16 32 H 0.06 1.52 6.47 -2.39 -0.02 1.51 16 33 H 0.08 1.58 8.12 -2.39 -0.02 1.56 16 34 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.07 2.10 8.06 -2.39 -0.02 2.08 16 36 H 0.04 1.17 8.12 -2.39 -0.02 1.15 16 37 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.06 2.11 6.55 -2.39 -0.02 2.10 16 39 H 0.08 2.95 8.07 -2.39 -0.02 2.93 16 40 H 0.06 2.49 7.48 -2.38 -0.02 2.47 16 41 H 0.06 2.25 3.50 -2.38 -0.01 2.24 16 42 H 0.04 1.58 7.45 -2.39 -0.02 1.56 16 43 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 44 H 0.04 1.66 7.92 -2.39 -0.02 1.64 16 45 H 0.07 2.30 3.82 -2.39 -0.01 2.29 16 46 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 47 H 0.06 1.64 7.82 -2.39 -0.02 1.62 16 48 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 49 H 0.08 1.33 4.49 -2.39 -0.01 1.32 16 50 H 0.06 1.29 5.56 -2.38 -0.01 1.28 16 51 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 52 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 53 H 0.13 1.62 7.97 -2.39 -0.02 1.60 16 54 H 0.09 2.94 5.48 -2.39 -0.01 2.93 16 55 H 0.14 3.09 5.19 -2.39 -0.01 3.08 16 Total: -1.00 -72.42 406.48 2.19 -70.23 By element: Atomic # 1 Polarization: 34.99 SS G_CDS: 0.81 Total: 35.81 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: 6.07 Total: 3.68 kcal Atomic # 7 Polarization: -94.60 SS G_CDS: -6.51 Total: -101.10 kcal Atomic # 8 Polarization: -48.62 SS G_CDS: -0.07 Total: -48.69 kcal Atomic # 14 Polarization: 38.19 SS G_CDS: 1.88 Total: 40.07 kcal Total: -72.42 2.19 -70.23 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362633141.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.457 kcal (2) G-P(sol) polarization free energy of solvation -72.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds