Wall clock time and date at job start Tue Mar 31 2020 22:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46904 * 111.00191 * 2 1 4 4 C 1.46903 * 110.99933 * 123.94860 * 2 1 3 5 5 C 1.52995 * 109.46953 * 66.04598 * 4 2 1 6 6 C 1.53003 * 109.47108 * 179.97438 * 5 4 2 7 7 N 1.46503 * 109.47307 * 179.97438 * 6 5 4 8 8 C 1.46496 * 120.00058 * 270.00376 * 7 6 5 9 9 C 1.50709 * 109.46974 * 263.45802 * 8 7 6 10 10 H 1.08000 * 119.99543 * 0.02562 * 9 8 7 11 11 C 1.37871 * 119.99781 * 179.97438 * 9 8 7 12 12 N 1.31519 * 119.99688 * 180.02562 * 11 9 8 13 13 Si 1.86795 * 120.00457 * 0.02562 * 11 9 8 14 14 H 1.48507 * 109.46949 * 89.99209 * 13 11 9 15 15 H 1.48498 * 109.47590 * 209.99482 * 13 11 9 16 16 H 1.48497 * 109.46910 * 329.99891 * 13 11 9 17 17 C 1.34776 * 119.99697 * 90.00247 * 7 6 5 18 18 O 1.21279 * 120.00453 * 5.62026 * 17 7 6 19 19 C 1.50704 * 119.99790 * 185.62750 * 17 7 6 20 20 H 1.09000 * 109.48631 * 311.15395 * 19 17 7 21 21 C 1.52751 * 109.56788 * 191.12103 * 19 17 7 22 22 C 1.54041 * 110.43267 * 166.52894 * 21 19 17 23 23 C 1.52468 * 111.03753 * 315.21481 * 22 21 19 24 24 C 1.54095 * 109.30221 * 114.22101 * 23 22 21 25 25 C 1.52048 * 109.17062 * 281.97879 * 24 23 22 26 26 C 1.51106 * 109.10598 * 72.60560 * 25 24 23 27 27 O 1.20755 * 120.41864 * 68.87211 * 26 25 24 28 28 C 1.49497 * 119.16169 * 248.85717 * 26 25 24 29 29 H 1.09003 * 109.46850 * 296.04894 * 1 2 3 30 30 H 1.08999 * 109.46739 * 56.04634 * 1 2 3 31 31 H 1.08998 * 109.47110 * 176.05252 * 1 2 3 32 32 H 1.09001 * 109.47112 * 183.95708 * 3 2 1 33 33 H 1.09003 * 109.46498 * 303.94841 * 3 2 1 34 34 H 1.08994 * 109.47352 * 63.95131 * 3 2 1 35 35 H 1.09004 * 109.47352 * 306.04550 * 4 2 1 36 36 H 1.09003 * 109.47059 * 186.04655 * 4 2 1 37 37 H 1.08997 * 109.47418 * 60.00075 * 5 4 2 38 38 H 1.08999 * 109.47746 * 300.00023 * 5 4 2 39 39 H 1.09004 * 109.47248 * 59.99920 * 6 5 4 40 40 H 1.09002 * 109.47513 * 300.00262 * 6 5 4 41 41 H 1.08998 * 109.47226 * 23.45927 * 8 7 6 42 42 H 1.08994 * 109.47263 * 143.46148 * 8 7 6 43 43 H 0.97002 * 120.00106 * 180.02562 * 12 11 9 44 44 H 1.09004 * 109.29664 * 46.23716 * 21 19 17 45 45 H 1.08997 * 109.29874 * 286.82302 * 21 19 17 46 46 H 1.09010 * 109.16402 * 194.81980 * 22 21 19 47 47 H 1.08996 * 109.12821 * 75.59271 * 22 21 19 48 48 H 1.08993 * 109.49922 * 354.26965 * 23 22 21 49 49 H 1.08999 * 109.49529 * 234.17185 * 23 22 21 50 50 H 1.09001 * 109.51736 * 162.06923 * 24 23 22 51 51 H 1.09005 * 109.57146 * 41.91950 * 24 23 22 52 52 H 1.09001 * 109.52945 * 312.71795 * 25 24 23 53 53 H 1.09002 * 109.59521 * 192.53548 * 25 24 23 54 54 H 1.09002 * 109.79815 * 162.58795 * 28 26 25 55 55 H 1.09002 * 109.79559 * 283.38867 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 1.6314 -2.2425 0.9705 6 6 2.1803 -3.0403 2.1551 7 7 1.8312 -4.4542 1.9954 8 6 0.5747 -4.9654 2.5485 9 6 0.8354 -5.5876 3.8962 10 1 1.8369 -5.6003 4.3004 11 6 -0.2047 -6.1394 4.6135 12 7 0.0228 -6.6818 5.7899 13 14 -1.9369 -6.1166 3.9148 14 1 -2.1640 -7.3468 3.1145 15 1 -2.9189 -6.0615 5.0274 16 1 -2.1048 -4.9235 3.0468 17 6 2.6661 -5.2844 1.3396 18 8 3.7509 -4.8868 0.9709 19 6 2.2515 -6.7069 1.0643 20 1 1.8702 -7.1583 1.9803 21 6 3.4564 -7.5040 0.5680 22 6 3.1526 -9.0138 0.6002 23 6 2.4726 -9.4076 1.9068 24 6 1.0358 -9.8795 1.6112 25 6 0.1493 -8.6660 1.3799 26 6 0.4839 -8.0577 0.0377 27 8 0.2139 -8.6433 -0.9833 28 6 1.1531 -6.7218 -0.0102 29 1 -0.3633 0.4513 0.9233 30 1 -0.3633 0.5740 -0.8524 31 1 -0.3633 -1.0252 -0.0707 32 1 3.0828 1.3432 -0.0709 33 1 1.5899 1.9162 -0.8525 34 1 1.7045 1.8724 0.9232 35 1 1.5611 -0.3871 2.0629 36 1 3.0797 -0.6610 1.1757 37 1 2.0657 -2.6213 0.0454 38 1 0.5472 -2.3475 0.9325 39 1 1.7463 -2.6616 3.0806 40 1 3.2646 -2.9354 2.1928 41 1 -0.1345 -4.1450 2.6581 42 1 0.1605 -5.7163 1.8758 43 1 -0.7089 -7.0704 6.2944 44 1 4.3144 -7.2952 1.2071 45 1 3.6901 -7.2050 -0.4537 46 1 4.0856 -9.5688 0.5010 47 1 2.4971 -9.2641 -0.2339 48 1 2.4427 -8.5471 2.5751 49 1 3.0313 -10.2159 2.3785 50 1 0.6581 -10.4501 2.4596 51 1 1.0337 -10.5073 0.7201 52 1 0.3240 -7.9319 2.1664 53 1 -0.8973 -8.9703 1.3914 54 1 1.5965 -6.5660 -0.9937 55 1 0.4252 -5.9368 0.1951 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362633142.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:34 Heat of formation + Delta-G solvation = -97.822616 kcal Electronic energy + Delta-G solvation = -32318.172140 eV Core-core repulsion = 28354.112547 eV Total energy + Delta-G solvation = -3964.059593 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.90175 -40.45131 -38.69766 -37.67900 -36.92934 -34.78981 -34.44303 -33.06607 -32.35180 -29.79231 -28.48929 -27.90729 -27.52205 -26.33215 -24.46860 -23.97719 -22.94717 -21.83395 -21.29317 -20.35042 -19.63964 -19.01574 -18.18639 -17.48328 -17.12976 -16.60917 -16.49196 -16.33076 -16.15081 -15.99222 -15.65409 -15.46426 -15.16535 -14.98866 -14.86141 -14.73864 -14.65771 -14.31502 -13.94740 -13.49650 -13.34353 -13.25496 -13.21097 -13.03997 -12.96666 -12.72154 -12.64163 -12.59070 -12.50612 -12.34754 -12.31042 -12.26721 -11.99683 -11.97136 -11.68829 -11.63798 -11.48491 -11.25590 -11.20780 -10.88566 -10.71258 -10.32340 -9.42147 -9.31784 -8.24516 -6.31288 0.86498 1.39458 1.44545 1.50136 1.72918 2.23088 2.36101 3.01990 3.07983 3.09053 3.58271 3.67940 3.79879 3.86762 3.94080 3.96245 4.07386 4.14153 4.17949 4.22748 4.31148 4.39966 4.45526 4.48309 4.49843 4.52643 4.61711 4.62478 4.65669 4.69582 4.74288 4.77611 4.79493 4.84278 4.88692 4.94434 4.96477 5.00268 5.01758 5.10015 5.13968 5.17113 5.19552 5.26798 5.32243 5.34429 5.48312 5.55155 5.73161 6.05169 6.10830 6.24788 6.43076 6.61455 6.75797 7.27196 7.37999 8.90901 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009801 B = 0.004340 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2856.165334 B = 6449.927475 C = 7745.407077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.564 5.564 3 C 0.025 3.975 4 C 0.064 3.936 5 C -0.114 4.114 6 C 0.117 3.883 7 N -0.594 5.594 8 C 0.211 3.789 9 C -0.535 4.535 10 H 0.034 0.966 11 C 0.037 3.963 12 N -0.933 5.933 13 Si 0.907 3.093 14 H -0.246 1.246 15 H -0.291 1.291 16 H -0.241 1.241 17 C 0.522 3.478 18 O -0.587 6.587 19 C -0.112 4.112 20 H 0.124 0.876 21 C -0.097 4.097 22 C -0.120 4.120 23 C -0.135 4.135 24 C -0.102 4.102 25 C -0.189 4.189 26 C 0.387 3.613 27 O -0.487 6.487 28 C -0.163 4.163 29 H 0.028 0.972 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.029 0.971 35 H 0.040 0.960 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.044 0.956 42 H 0.048 0.952 43 H 0.267 0.733 44 H 0.059 0.941 45 H 0.068 0.932 46 H 0.083 0.917 47 H 0.059 0.941 48 H 0.061 0.939 49 H 0.081 0.919 50 H 0.082 0.918 51 H 0.075 0.925 52 H 0.093 0.907 53 H 0.099 0.901 54 H 0.101 0.899 55 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.734 4.750 -10.043 11.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.288 5.288 3 C -0.123 4.123 4 C -0.065 4.065 5 C -0.153 4.153 6 C -0.007 4.007 7 N -0.323 5.323 8 C 0.089 3.911 9 C -0.574 4.574 10 H 0.052 0.948 11 C -0.163 4.163 12 N -0.572 5.572 13 Si 0.730 3.270 14 H -0.170 1.170 15 H -0.218 1.218 16 H -0.165 1.165 17 C 0.312 3.688 18 O -0.468 6.468 19 C -0.132 4.132 20 H 0.141 0.859 21 C -0.135 4.135 22 C -0.158 4.158 23 C -0.173 4.173 24 C -0.140 4.140 25 C -0.226 4.226 26 C 0.266 3.734 27 O -0.363 6.363 28 C -0.201 4.201 29 H 0.047 0.953 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.047 0.953 35 H 0.059 0.941 36 H 0.094 0.906 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.087 0.913 46 H 0.102 0.898 47 H 0.078 0.922 48 H 0.080 0.920 49 H 0.099 0.901 50 H 0.101 0.899 51 H 0.093 0.907 52 H 0.111 0.889 53 H 0.117 0.883 54 H 0.120 0.880 55 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.251 4.357 -11.042 11.874 hybrid contribution -0.959 0.514 1.404 1.776 sum -1.210 4.871 -9.638 10.867 Atomic orbital electron populations 1.22465 0.86815 1.02471 1.00996 1.61966 1.08821 1.14806 1.43252 1.22419 1.00988 0.87838 1.01074 1.21970 1.00345 0.92577 0.91597 1.21775 1.01137 0.94399 0.97948 1.21354 1.00580 0.80197 0.98522 1.47918 1.21848 1.08972 1.53602 1.19814 0.82499 0.95615 0.93156 1.21402 0.95188 1.38231 1.02555 0.94811 1.25511 1.02292 0.93976 0.94530 1.70027 1.33878 1.39348 1.13954 0.86326 0.80014 0.81374 0.79266 1.17000 1.21750 1.16470 1.20718 0.83496 0.87976 0.76649 1.90581 1.23039 1.78214 1.55013 1.21646 0.97392 0.92799 1.01390 0.85857 1.21562 0.95941 0.94419 1.01603 1.21812 1.01645 0.94712 0.97599 1.21970 0.95700 1.01898 0.97685 1.21555 0.94180 0.95412 1.02837 1.22347 1.02677 1.00884 0.96738 1.24339 0.72205 0.86540 0.90330 1.90356 1.45357 1.62382 1.38191 1.22235 0.98847 0.98105 1.00899 0.95337 0.90266 0.91650 0.91157 0.90285 0.95274 0.94140 0.90627 0.92562 0.91497 0.90467 0.91525 0.93766 0.93427 0.92345 0.92227 0.91326 0.89828 0.92203 0.92012 0.90070 0.89926 0.90686 0.88892 0.88296 0.88009 0.86831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.32 127.69 1.19 1.59 16 2 N -0.56 -12.62 5.02 -948.83 -4.76 -17.38 16 3 C 0.02 0.43 9.57 127.69 1.22 1.65 16 4 C 0.06 1.53 4.96 86.30 0.43 1.96 16 5 C -0.11 -3.19 5.46 30.59 0.17 -3.03 16 6 C 0.12 3.90 5.42 86.38 0.47 4.37 16 7 N -0.59 -22.30 2.47 -826.14 -2.04 -24.34 16 8 C 0.21 8.24 3.70 85.64 0.32 8.56 16 9 C -0.54 -25.93 9.18 25.60 0.24 -25.69 16 10 H 0.03 1.92 8.06 -2.91 -0.02 1.90 16 11 C 0.04 1.84 5.47 84.65 0.46 2.30 16 12 N -0.93 -51.32 13.96 21.45 0.30 -51.02 16 13 Si 0.91 36.13 27.47 68.60 1.88 38.02 16 14 H -0.25 -8.95 7.11 99.48 0.71 -8.25 16 15 H -0.29 -12.07 7.11 99.48 0.71 -11.37 16 16 H -0.24 -8.71 6.54 99.48 0.65 -8.06 16 17 C 0.52 20.12 6.79 87.66 0.60 20.72 16 18 O -0.59 -25.14 15.46 -3.03 -0.05 -25.19 16 19 C -0.11 -3.73 1.24 -11.40 -0.01 -3.74 16 20 H 0.12 4.47 2.28 -2.39 -0.01 4.47 16 21 C -0.10 -2.98 4.46 30.86 0.14 -2.84 16 22 C -0.12 -3.15 5.38 30.77 0.17 -2.98 16 23 C -0.14 -3.68 5.51 30.79 0.17 -3.51 16 24 C -0.10 -2.70 5.63 30.65 0.17 -2.53 16 25 C -0.19 -5.61 5.45 29.66 0.16 -5.45 16 26 C 0.39 11.74 4.16 28.86 0.12 11.86 16 27 O -0.49 -16.41 17.42 -1.44 -0.03 -16.43 16 28 C -0.16 -4.86 4.63 29.70 0.14 -4.73 16 29 H 0.03 0.53 8.14 -2.39 -0.02 0.52 16 30 H 0.08 1.31 8.12 -2.39 -0.02 1.29 16 31 H 0.06 1.37 6.47 -2.39 -0.02 1.35 16 32 H 0.07 1.18 8.12 -2.39 -0.02 1.16 16 33 H 0.08 1.17 8.12 -2.39 -0.02 1.15 16 34 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.04 0.93 8.12 -2.39 -0.02 0.91 16 36 H 0.08 1.80 8.06 -2.39 -0.02 1.78 16 37 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.07 1.82 6.55 -2.39 -0.02 1.81 16 39 H 0.08 2.54 8.07 -2.39 -0.02 2.52 16 40 H 0.07 2.35 7.35 -2.39 -0.02 2.34 16 41 H 0.04 1.67 7.08 -2.39 -0.02 1.66 16 42 H 0.05 1.72 3.63 -2.39 -0.01 1.71 16 43 H 0.27 13.89 8.31 -92.71 -0.77 13.12 16 44 H 0.06 1.98 7.80 -2.39 -0.02 1.96 16 45 H 0.07 2.04 7.87 -2.39 -0.02 2.03 16 46 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 47 H 0.06 1.60 5.66 -2.39 -0.01 1.59 16 48 H 0.06 2.02 5.52 -2.39 -0.01 2.01 16 49 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 50 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 51 H 0.07 1.86 7.57 -2.38 -0.02 1.84 16 52 H 0.09 3.14 5.56 -2.39 -0.01 3.12 16 53 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 54 H 0.10 2.88 7.85 -2.39 -0.02 2.86 16 55 H 0.11 3.26 6.06 -2.39 -0.01 3.25 16 Total: -1.00 -60.72 408.10 2.25 -58.46 By element: Atomic # 1 Polarization: 38.57 SS G_CDS: 0.81 Total: 39.38 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: 6.14 Total: -1.50 kcal Atomic # 7 Polarization: -86.24 SS G_CDS: -6.50 Total: -92.74 kcal Atomic # 8 Polarization: -41.55 SS G_CDS: -0.07 Total: -41.62 kcal Atomic # 14 Polarization: 36.13 SS G_CDS: 1.88 Total: 38.02 kcal Total: -60.72 2.25 -58.46 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362633142.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.362 kcal (2) G-P(sol) polarization free energy of solvation -60.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds