Wall clock time and date at job start Tue Mar 31 2020 22:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46496 * 119.99896 * 2 1 4 4 C 1.50699 * 109.47398 * 270.00022 * 3 2 1 5 5 H 1.08003 * 120.00015 * 0.02562 * 4 3 2 6 6 C 1.37873 * 120.00048 * 180.02562 * 4 3 2 7 7 N 1.31511 * 120.00473 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99797 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.47277 * 90.00109 * 8 6 4 10 10 H 1.48505 * 109.47157 * 209.99828 * 8 6 4 11 11 H 1.48499 * 109.47291 * 330.00013 * 8 6 4 12 12 C 1.34777 * 119.99832 * 180.02562 * 2 1 3 13 13 O 1.21278 * 119.99854 * 180.02562 * 12 2 1 14 14 C 1.50703 * 120.00161 * 359.97438 * 12 2 1 15 15 C 1.53000 * 109.46912 * 180.02562 * 14 12 2 16 16 N 1.46901 * 109.46769 * 180.02562 * 15 14 12 17 17 C 1.46843 * 111.00314 * 66.04469 * 16 15 14 18 18 C 1.53036 * 109.52501 * 174.16101 * 17 16 15 19 19 C 1.53118 * 109.27888 * 59.17739 * 18 17 16 20 20 C 1.53119 * 109.15998 * 302.34413 * 19 18 17 21 21 H 1.09000 * 109.50359 * 297.71584 * 20 19 18 22 22 C 1.52997 * 109.49879 * 177.63463 * 20 19 18 23 23 C 1.52995 * 109.47348 * 65.00620 * 22 20 19 24 24 H 1.09004 * 110.43225 * 303.90115 * 23 22 20 25 25 C 1.54816 * 110.49048 * 181.21985 * 23 22 20 26 26 C 1.54993 * 102.09130 * 220.44140 * 25 23 22 27 27 O 1.44386 * 103.49239 * 37.02084 * 26 25 23 28 28 C 1.43743 * 106.97196 * 319.94161 * 27 26 25 29 29 C 1.46847 * 111.00007 * 301.83069 * 16 15 14 30 30 H 1.08999 * 109.47333 * 269.99341 * 1 2 3 31 31 H 1.08997 * 109.47024 * 30.00155 * 1 2 3 32 32 H 1.09000 * 109.46875 * 149.99915 * 1 2 3 33 33 H 1.09000 * 109.47082 * 30.00019 * 3 2 1 34 34 H 1.09004 * 109.46754 * 150.00286 * 3 2 1 35 35 H 0.96999 * 120.00725 * 179.97438 * 7 6 4 36 36 H 1.09002 * 109.47152 * 60.00245 * 14 12 2 37 37 H 1.09001 * 109.46980 * 300.00345 * 14 12 2 38 38 H 1.09001 * 109.47194 * 299.99742 * 15 14 12 39 39 H 1.08992 * 109.47399 * 59.99914 * 15 14 12 40 40 H 1.09005 * 109.46467 * 294.17786 * 17 16 15 41 41 H 1.08999 * 109.46457 * 54.14100 * 17 16 15 42 42 H 1.09006 * 109.50549 * 179.12318 * 18 17 16 43 43 H 1.09002 * 109.50190 * 299.23613 * 18 17 16 44 44 H 1.08995 * 109.52393 * 62.25378 * 19 18 17 45 45 H 1.09000 * 109.52331 * 182.37780 * 19 18 17 46 46 H 1.09002 * 109.47111 * 185.00497 * 22 20 19 47 47 H 1.09001 * 109.47569 * 304.99787 * 22 20 19 48 48 H 1.09001 * 110.90565 * 338.63565 * 25 23 22 49 49 H 1.08991 * 110.90780 * 102.23961 * 25 23 22 50 50 H 1.09003 * 110.62007 * 278.51972 * 26 25 23 51 51 H 1.08993 * 110.61874 * 155.52213 * 26 25 23 52 52 H 1.09006 * 109.87987 * 267.08690 * 28 27 26 53 53 H 1.08996 * 110.00178 * 146.00982 * 28 27 26 54 54 H 1.08993 * 109.46224 * 305.85870 * 29 16 15 55 55 H 1.08999 * 109.46167 * 65.82807 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0974 1.0962 -2.2417 6 6 3.1269 2.8775 -1.6727 7 7 3.5551 3.6171 -0.6731 8 14 3.4376 3.4171 -3.4338 9 1 2.3078 4.2607 -3.8997 10 1 4.6983 4.1994 -3.4968 11 1 3.5537 2.2202 -4.3051 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0001 14 6 1.3854 -2.4723 -0.0005 15 6 2.3797 -3.6352 -0.0005 16 7 1.6451 -4.9074 -0.0011 17 6 0.9004 -5.0845 -1.2542 18 6 0.2680 -6.4779 -1.2808 19 6 -0.6713 -6.6297 -0.0812 20 6 0.1188 -6.3929 1.2089 21 1 0.8997 -7.1477 1.3011 22 6 -0.8248 -6.4845 2.4098 23 6 -1.3677 -7.9103 2.5242 24 1 -1.8553 -8.2075 1.5957 25 6 -2.3503 -8.0221 3.7153 26 6 -1.9729 -9.3987 4.3194 27 8 -0.5384 -9.4525 4.1648 28 6 -0.2339 -8.8926 2.8764 29 6 0.7554 -5.0020 1.1633 30 1 -0.3634 -0.0001 1.0276 31 1 -0.3633 0.8899 -0.5138 32 1 -0.3633 -0.8900 -0.5139 33 1 1.6084 2.0283 0.5138 34 1 3.1500 1.1383 0.5138 35 1 4.0326 4.4426 -0.8503 36 1 0.7584 -2.5299 -0.8903 37 1 0.7590 -2.5302 0.8897 38 1 3.0063 -3.5775 -0.8905 39 1 3.0063 -3.5775 0.8894 40 1 0.1175 -4.3290 -1.3214 41 1 1.5806 -4.9783 -2.0992 42 1 -0.2977 -6.6033 -2.2041 43 1 1.0512 -7.2341 -1.2277 44 1 -1.4768 -5.8990 -0.1544 45 1 -1.0916 -7.6354 -0.0726 46 1 -0.2813 -6.2287 3.3193 47 1 -1.6538 -5.7898 2.2745 48 1 -2.1811 -7.2217 4.4356 49 1 -3.3836 -8.0196 3.3686 50 1 -2.4495 -10.2058 3.7629 51 1 -2.2473 -9.4436 5.3733 52 1 -0.1850 -9.6854 2.1299 53 1 0.7173 -8.3619 2.9159 54 1 1.3305 -4.8358 2.0741 55 1 -0.0268 -4.2469 1.0849 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000375825057.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:30 Heat of formation + Delta-G solvation = -119.707682 kcal Electronic energy + Delta-G solvation = -30214.263573 eV Core-core repulsion = 26249.254973 eV Total energy + Delta-G solvation = -3965.008600 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.12274 -40.57089 -39.67705 -36.71907 -36.25155 -34.76870 -34.00977 -32.06286 -31.34075 -30.02084 -29.44331 -27.37169 -26.74143 -26.33056 -24.67644 -23.88978 -23.09983 -22.34441 -20.94858 -20.49661 -19.71061 -18.72834 -18.00187 -17.49137 -17.14634 -17.07085 -16.72655 -16.38550 -16.20640 -15.98048 -15.78727 -15.30991 -15.17861 -14.83265 -14.55426 -14.28860 -14.10038 -13.92853 -13.78554 -13.61398 -13.57000 -13.47306 -13.33843 -13.16544 -12.96141 -12.94685 -12.79839 -12.52024 -12.34678 -12.27192 -12.23052 -11.98372 -11.79589 -11.73728 -11.67363 -11.59150 -11.34289 -11.05615 -10.93052 -10.66698 -10.63787 -10.56519 -9.45140 -9.24036 -8.24764 -6.40057 1.34383 1.37745 1.47986 1.80403 2.29087 2.43045 2.92855 3.04497 3.09641 3.61707 3.68405 3.79929 3.88291 3.94548 3.98694 4.03160 4.06109 4.16603 4.30035 4.31486 4.34206 4.39439 4.46600 4.49074 4.58401 4.61219 4.66283 4.73291 4.78610 4.83478 4.86487 4.87540 4.90123 4.90683 4.99238 5.00170 5.00991 5.04860 5.10016 5.13851 5.15613 5.20194 5.22380 5.31908 5.34418 5.48578 5.53112 5.60312 5.81196 6.00137 6.03318 6.09224 6.21830 6.66676 6.76111 7.25627 7.45739 8.82308 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.023477 B = 0.001950 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.381778 B =14355.618063 C =14776.745247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.613 5.613 3 C 0.258 3.742 4 C -0.543 4.543 5 H 0.052 0.948 6 C 0.006 3.994 7 N -0.928 5.928 8 Si 0.969 3.031 9 H -0.262 1.262 10 H -0.280 1.280 11 H -0.273 1.273 12 C 0.496 3.504 13 O -0.598 6.598 14 C -0.154 4.154 15 C 0.081 3.919 16 N -0.537 5.537 17 C 0.045 3.955 18 C -0.113 4.113 19 C -0.112 4.112 20 C -0.079 4.079 21 H 0.071 0.929 22 C -0.098 4.098 23 C -0.115 4.115 24 H 0.098 0.902 25 C -0.149 4.149 26 C 0.038 3.962 27 O -0.411 6.411 28 C 0.044 3.956 29 C 0.052 3.948 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.023 0.977 34 H -0.003 1.003 35 H 0.268 0.732 36 H 0.106 0.894 37 H 0.112 0.888 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.041 0.959 41 H 0.065 0.935 42 H 0.079 0.921 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.078 0.922 46 H 0.059 0.941 47 H 0.075 0.925 48 H 0.075 0.925 49 H 0.096 0.904 50 H 0.069 0.931 51 H 0.097 0.903 52 H 0.061 0.939 53 H 0.079 0.921 54 H 0.066 0.934 55 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.340 -26.459 4.664 32.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.344 5.344 3 C 0.136 3.864 4 C -0.582 4.582 5 H 0.071 0.929 6 C -0.193 4.193 7 N -0.568 5.568 8 Si 0.794 3.206 9 H -0.187 1.187 10 H -0.206 1.206 11 H -0.198 1.198 12 C 0.285 3.715 13 O -0.479 6.479 14 C -0.195 4.195 15 C -0.048 4.048 16 N -0.260 5.260 17 C -0.082 4.082 18 C -0.150 4.150 19 C -0.149 4.149 20 C -0.098 4.098 21 H 0.090 0.910 22 C -0.136 4.136 23 C -0.133 4.133 24 H 0.116 0.884 25 C -0.187 4.187 26 C -0.038 4.038 27 O -0.331 6.331 28 C -0.032 4.032 29 C -0.075 4.075 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.109 0.891 33 H 0.041 0.959 34 H 0.015 0.985 35 H 0.076 0.924 36 H 0.124 0.876 37 H 0.130 0.870 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.059 0.941 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.096 0.904 46 H 0.078 0.922 47 H 0.094 0.906 48 H 0.093 0.907 49 H 0.115 0.885 50 H 0.087 0.913 51 H 0.115 0.885 52 H 0.079 0.921 53 H 0.098 0.902 54 H 0.085 0.915 55 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -17.154 -26.754 4.894 32.156 hybrid contribution 0.145 1.680 -0.851 1.889 sum -17.009 -25.075 4.042 30.568 Atomic orbital electron populations 1.21904 0.77942 1.03861 1.02502 1.48242 1.08410 1.06517 1.71245 1.18753 0.91070 0.80474 0.96061 1.21685 1.36931 1.06586 0.92970 0.92930 1.25896 0.94874 0.96442 1.02132 1.70049 1.38828 1.14819 1.33082 0.85389 0.78138 0.78206 0.78914 1.18682 1.20581 1.19790 1.21314 0.87820 0.86549 0.75845 1.90638 1.16651 1.88193 1.52459 1.22281 1.00456 0.91320 1.05443 1.21762 0.94951 0.85367 1.02703 1.62220 1.29001 1.31251 1.03479 1.22231 0.96504 0.98047 0.91453 1.21568 0.98839 0.95552 0.99083 1.21662 0.97512 1.02531 0.93197 1.21180 0.97348 0.96045 0.95233 0.91050 1.21570 0.98892 0.95744 0.97435 1.22560 0.95488 0.95489 0.99809 0.88388 1.23220 1.00541 0.97555 0.97346 1.23739 0.80546 0.97168 1.02376 1.88852 1.23944 1.83602 1.36672 1.23393 0.99189 0.95821 0.84811 1.22250 0.94796 0.97568 0.92922 0.91159 0.91560 0.89067 0.95915 0.98523 0.92358 0.87563 0.86958 0.91908 0.91513 0.94105 0.91647 0.90263 0.91826 0.91603 0.90382 0.92228 0.90617 0.90668 0.88503 0.91313 0.88451 0.92077 0.90237 0.91516 0.93711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.36 10.24 127.77 1.31 3.67 16 2 N -0.61 -26.30 2.86 -851.13 -2.43 -28.73 16 3 C 0.26 14.20 5.16 85.63 0.44 14.64 16 4 C -0.54 -31.79 9.39 25.60 0.24 -31.55 16 5 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 6 C 0.01 0.32 5.46 84.65 0.46 0.78 16 7 N -0.93 -56.80 13.29 21.45 0.28 -56.51 16 8 Si 0.97 45.30 29.54 68.60 2.03 47.33 16 9 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 12 C 0.50 20.77 7.67 87.66 0.67 21.44 16 13 O -0.60 -31.52 15.56 -3.02 -0.05 -31.56 16 14 C -0.15 -4.22 3.55 29.85 0.11 -4.12 16 15 C 0.08 2.27 4.65 86.30 0.40 2.68 16 16 N -0.54 -11.60 4.86 -896.38 -4.35 -15.95 16 17 C 0.05 0.83 5.05 86.33 0.44 1.27 16 18 C -0.11 -1.53 6.09 30.65 0.19 -1.34 16 19 C -0.11 -1.22 4.99 30.67 0.15 -1.06 16 20 C -0.08 -1.03 2.23 -10.74 -0.02 -1.06 16 21 H 0.07 1.08 6.76 -2.39 -0.02 1.07 16 22 C -0.10 -1.06 3.92 30.59 0.12 -0.94 16 23 C -0.11 -1.11 2.89 -9.81 -0.03 -1.14 16 24 H 0.10 0.72 6.52 -2.39 -0.02 0.71 16 25 C -0.15 -1.31 6.71 31.90 0.21 -1.10 16 26 C 0.04 0.42 7.72 72.66 0.56 0.98 16 27 O -0.41 -7.47 11.52 -148.98 -1.72 -9.19 16 28 C 0.04 0.61 6.87 72.35 0.50 1.11 16 29 C 0.05 0.91 4.12 86.33 0.36 1.26 16 30 H 0.07 1.71 8.14 -2.39 -0.02 1.70 16 31 H 0.07 2.07 8.07 -2.39 -0.02 2.05 16 32 H 0.09 2.02 6.44 -2.39 -0.02 2.01 16 33 H 0.02 1.27 8.07 -2.39 -0.02 1.25 16 34 H 0.00 -0.21 7.42 -2.39 -0.02 -0.23 16 35 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 36 H 0.11 2.52 5.94 -2.39 -0.01 2.51 16 37 H 0.11 2.51 6.47 -2.39 -0.02 2.50 16 38 H 0.06 2.02 8.02 -2.39 -0.02 2.00 16 39 H 0.07 2.09 8.10 -2.39 -0.02 2.07 16 40 H 0.04 0.71 6.75 -2.38 -0.02 0.69 16 41 H 0.06 1.32 8.06 -2.39 -0.02 1.30 16 42 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 43 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.08 0.65 6.63 -2.39 -0.02 0.64 16 46 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.07 0.73 7.87 -2.39 -0.02 0.71 16 49 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 50 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 51 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 52 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 53 H 0.08 1.20 6.72 -2.39 -0.02 1.18 16 54 H 0.07 1.28 8.12 -2.39 -0.02 1.26 16 55 H 0.04 0.72 6.61 -2.39 -0.02 0.70 16 Total: -1.00 -76.25 415.75 0.71 -75.55 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: 0.84 Total: 13.52 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 6.10 Total: 5.54 kcal Atomic # 7 Polarization: -94.69 SS G_CDS: -6.50 Total: -101.20 kcal Atomic # 8 Polarization: -38.99 SS G_CDS: -1.76 Total: -40.75 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -76.25 0.71 -75.55 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375825057.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.160 kcal (2) G-P(sol) polarization free energy of solvation -76.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds