Wall clock time and date at job start Tue Mar 31 2020 22:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46497 * 119.99755 * 2 1 4 4 C 1.50704 * 109.46750 * 269.99828 * 3 2 1 5 5 H 1.07992 * 120.00372 * 359.97438 * 4 3 2 6 6 C 1.37885 * 119.99820 * 180.02562 * 4 3 2 7 7 N 1.31512 * 119.99843 * 359.97438 * 6 4 3 8 8 Si 1.86794 * 119.99921 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47374 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47178 * 120.00043 * 8 6 4 11 11 H 1.48498 * 109.47065 * 239.99816 * 8 6 4 12 12 C 1.34770 * 120.00310 * 179.97438 * 2 1 3 13 13 O 1.21279 * 120.00248 * 180.02562 * 12 2 1 14 14 C 1.50702 * 119.99945 * 0.02562 * 12 2 1 15 15 C 1.52999 * 109.46996 * 179.97438 * 14 12 2 16 16 N 1.46900 * 109.47083 * 179.97438 * 15 14 12 17 17 C 1.46848 * 110.99885 * 65.79155 * 16 15 14 18 18 C 1.53045 * 109.52258 * 185.83861 * 17 16 15 19 19 C 1.53118 * 109.27951 * 300.81870 * 18 17 16 20 20 C 1.53125 * 109.15767 * 57.65538 * 19 18 17 21 21 H 1.09003 * 109.53059 * 62.30703 * 20 19 18 22 22 C 1.52998 * 109.50333 * 182.39962 * 20 19 18 23 23 C 1.52994 * 109.47207 * 185.57142 * 22 20 19 24 24 H 1.08995 * 110.75640 * 302.04539 * 23 22 20 25 25 C 1.55306 * 110.84743 * 178.35161 * 23 22 20 26 26 C 1.54952 * 100.94111 * 207.67942 * 25 23 22 27 27 O 1.43645 * 105.13533 * 36.44113 * 26 25 23 28 28 C 1.43234 * 109.97195 * 335.57157 * 27 26 25 29 29 C 1.46847 * 111.00122 * 190.00330 * 16 15 14 30 30 H 1.08995 * 109.47288 * 269.99836 * 1 2 3 31 31 H 1.08996 * 109.47109 * 30.00751 * 1 2 3 32 32 H 1.09006 * 109.46445 * 150.00279 * 1 2 3 33 33 H 1.09004 * 109.47226 * 29.99015 * 3 2 1 34 34 H 1.08996 * 109.47522 * 149.99584 * 3 2 1 35 35 H 0.97009 * 119.99746 * 180.02562 * 7 6 4 36 36 H 1.08995 * 109.46938 * 60.00232 * 14 12 2 37 37 H 1.09002 * 109.47598 * 300.00233 * 14 12 2 38 38 H 1.09005 * 109.47048 * 60.00454 * 15 14 12 39 39 H 1.08993 * 109.47470 * 300.00011 * 15 14 12 40 40 H 1.08999 * 109.46102 * 305.85382 * 17 16 15 41 41 H 1.09003 * 109.46337 * 65.83668 * 17 16 15 42 42 H 1.08998 * 109.50021 * 60.76376 * 18 17 16 43 43 H 1.09002 * 109.49915 * 180.84184 * 18 17 16 44 44 H 1.08999 * 109.52426 * 297.75448 * 19 18 17 45 45 H 1.08999 * 109.52090 * 177.55985 * 19 18 17 46 46 H 1.09003 * 109.46419 * 65.57379 * 22 20 19 47 47 H 1.09004 * 109.47267 * 305.57876 * 22 20 19 48 48 H 1.09004 * 111.12479 * 325.59265 * 25 23 22 49 49 H 1.08991 * 111.13243 * 89.75967 * 25 23 22 50 50 H 1.09001 * 110.30531 * 277.52376 * 26 25 23 51 51 H 1.08997 * 110.31168 * 155.35889 * 26 25 23 52 52 H 1.09003 * 109.82652 * 121.22879 * 28 27 26 53 53 H 1.08994 * 109.83058 * 242.19722 * 28 27 26 54 54 H 1.09000 * 109.46378 * 54.14526 * 29 16 15 55 55 H 1.08996 * 109.46100 * 294.17636 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4209 5 1 2.0982 1.0957 -2.2417 6 6 3.1269 2.8775 -1.6729 7 7 3.5541 3.6176 -0.6733 8 14 3.4388 3.4162 -3.4340 9 1 2.8618 2.4157 -4.3674 10 1 2.8017 4.7371 -3.6678 11 1 4.9014 3.5240 -3.6670 12 6 2.1390 -1.1671 0.0005 13 8 3.3518 -1.1671 0.0010 14 6 1.3855 -2.4723 0.0005 15 6 2.3798 -3.6351 0.0005 16 7 1.6454 -4.9073 0.0011 17 6 0.8950 -5.0824 -1.2489 18 6 0.0308 -6.3420 -1.1546 19 6 0.9308 -7.5550 -0.9036 20 6 1.7369 -7.3261 0.3780 21 1 1.0568 -7.2371 1.2252 22 6 2.6829 -8.5071 0.6043 23 6 3.3862 -8.3459 1.9534 24 1 3.9350 -7.4050 1.9929 25 6 4.3251 -9.5506 2.2346 26 6 4.3238 -9.5691 3.7840 27 8 2.9876 -9.2020 4.1624 28 6 2.3743 -8.4408 3.1154 29 6 2.5516 -6.0380 0.2393 30 1 -0.3633 0.0000 1.0276 31 1 -0.3633 0.8899 -0.5139 32 1 -0.3632 -0.8901 -0.5138 33 1 1.6083 2.0284 0.5137 34 1 3.1499 1.1385 0.5139 35 1 4.0310 4.4436 -0.8506 36 1 0.7593 -2.5302 -0.8897 37 1 0.7584 -2.5299 0.8902 38 1 3.0064 -3.5774 0.8906 39 1 3.0065 -3.5774 -0.8894 40 1 0.2559 -4.2149 -1.4134 41 1 1.5927 -5.1824 -2.0804 42 1 -0.6765 -6.2371 -0.3319 43 1 -0.5146 -6.4797 -2.0882 44 1 1.6124 -7.6831 -1.7446 45 1 0.3159 -8.4481 -0.7926 46 1 3.4265 -8.5346 -0.1922 47 1 2.1121 -9.4357 0.6007 48 1 3.9107 -10.4743 1.8305 49 1 5.3264 -9.3679 1.8448 50 1 5.0395 -8.8440 4.1715 51 1 4.5600 -10.5680 4.1507 52 1 1.4677 -8.9420 2.7763 53 1 2.1324 -7.4417 3.4776 54 1 3.1157 -5.8646 1.1557 55 1 3.2415 -6.1333 -0.5991 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000375825058.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:34 Heat of formation + Delta-G solvation = -121.364188 kcal Electronic energy + Delta-G solvation = -30067.711525 eV Core-core repulsion = 26102.631093 eV Total energy + Delta-G solvation = -3965.080432 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.99437 -40.58583 -39.66926 -36.69105 -36.18163 -34.76395 -34.19655 -31.97965 -31.70403 -29.99887 -29.55812 -27.34361 -26.75370 -26.15616 -24.51640 -23.92696 -23.19845 -22.09748 -21.09300 -20.44773 -19.85010 -18.72232 -18.08851 -17.68565 -17.12685 -16.92608 -16.79722 -16.44252 -16.24311 -15.89805 -15.66249 -15.39747 -15.19536 -14.60580 -14.55286 -14.41253 -14.15147 -14.02001 -13.84513 -13.74698 -13.63857 -13.45814 -13.30960 -13.25809 -12.98807 -12.80882 -12.62652 -12.46633 -12.34887 -12.27717 -12.22944 -12.17331 -11.96772 -11.69842 -11.65455 -11.63491 -11.33079 -11.07867 -10.94345 -10.67027 -10.60863 -10.47397 -9.42807 -9.32688 -8.24340 -6.39395 1.34427 1.36872 1.48722 1.83425 2.27165 2.40787 2.94477 2.98801 3.04954 3.51620 3.62853 3.80997 3.88534 3.91445 4.00461 4.05120 4.10620 4.16945 4.28055 4.32036 4.33764 4.40276 4.44798 4.52954 4.54497 4.64333 4.69188 4.72498 4.77964 4.82298 4.84435 4.84615 4.91622 4.93230 4.96693 4.98807 4.99459 5.02542 5.06712 5.07898 5.10679 5.17892 5.22063 5.29546 5.35420 5.40829 5.54806 5.57769 5.83100 6.04241 6.05323 6.07603 6.17058 6.68116 6.78583 7.26338 7.47637 8.82934 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016434 B = 0.002037 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.327455 B =13742.844859 C =14315.211202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.612 5.612 3 C 0.257 3.743 4 C -0.541 4.541 5 H 0.053 0.947 6 C 0.004 3.996 7 N -0.929 5.929 8 Si 0.970 3.030 9 H -0.267 1.267 10 H -0.268 1.268 11 H -0.282 1.282 12 C 0.494 3.506 13 O -0.602 6.602 14 C -0.114 4.114 15 C 0.081 3.919 16 N -0.534 5.534 17 C 0.044 3.956 18 C -0.111 4.111 19 C -0.114 4.114 20 C -0.078 4.078 21 H 0.079 0.921 22 C -0.094 4.094 23 C -0.122 4.122 24 H 0.078 0.922 25 C -0.147 4.147 26 C 0.042 3.958 27 O -0.415 6.415 28 C 0.053 3.947 29 C 0.059 3.941 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.023 0.977 34 H -0.004 1.004 35 H 0.267 0.733 36 H 0.110 0.890 37 H 0.120 0.880 38 H 0.065 0.935 39 H 0.017 0.983 40 H 0.080 0.920 41 H 0.023 0.977 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.057 0.943 45 H 0.079 0.921 46 H 0.070 0.930 47 H 0.081 0.919 48 H 0.088 0.912 49 H 0.092 0.908 50 H 0.058 0.942 51 H 0.095 0.905 52 H 0.078 0.922 53 H 0.060 0.940 54 H 0.069 0.931 55 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.072 -29.506 1.967 30.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.343 5.343 3 C 0.136 3.864 4 C -0.580 4.580 5 H 0.071 0.929 6 C -0.194 4.194 7 N -0.569 5.569 8 Si 0.794 3.206 9 H -0.191 1.191 10 H -0.193 1.193 11 H -0.208 1.208 12 C 0.283 3.717 13 O -0.484 6.484 14 C -0.154 4.154 15 C -0.047 4.047 16 N -0.259 5.259 17 C -0.084 4.084 18 C -0.149 4.149 19 C -0.152 4.152 20 C -0.097 4.097 21 H 0.097 0.903 22 C -0.132 4.132 23 C -0.140 4.140 24 H 0.097 0.903 25 C -0.184 4.184 26 C -0.034 4.034 27 O -0.335 6.335 28 C -0.023 4.023 29 C -0.069 4.069 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.113 0.887 33 H 0.041 0.959 34 H 0.014 0.986 35 H 0.076 0.924 36 H 0.128 0.872 37 H 0.138 0.862 38 H 0.083 0.917 39 H 0.036 0.964 40 H 0.099 0.901 41 H 0.041 0.959 42 H 0.091 0.909 43 H 0.097 0.903 44 H 0.076 0.924 45 H 0.098 0.902 46 H 0.088 0.912 47 H 0.100 0.900 48 H 0.106 0.894 49 H 0.111 0.889 50 H 0.077 0.923 51 H 0.113 0.887 52 H 0.096 0.904 53 H 0.079 0.921 54 H 0.087 0.913 55 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -7.831 -29.357 2.589 30.494 hybrid contribution 1.431 1.219 -1.398 2.342 sum -6.400 -28.139 1.191 28.882 Atomic orbital electron populations 1.21937 0.77740 1.04007 1.02631 1.48210 1.08516 1.06399 1.71162 1.18758 0.91075 0.80524 0.96054 1.21723 1.36747 1.06505 0.92990 0.92892 1.25906 0.94938 0.96469 1.02127 1.70065 1.38954 1.14824 1.33019 0.85336 0.77872 0.78442 0.78963 1.19083 1.19282 1.20768 1.21396 0.87795 0.86761 0.75780 1.90628 1.16789 1.88294 1.52724 1.21554 0.98844 0.88816 1.06165 1.21585 0.94267 0.88420 1.00462 1.61949 1.27259 1.01093 1.35559 1.22295 0.96784 1.00013 0.89265 1.21561 0.97653 0.92912 1.02746 1.21637 0.98313 0.98428 0.96793 1.21184 0.96849 0.92570 0.99066 0.90276 1.21519 0.98182 0.98206 0.95254 1.22762 0.96411 0.99350 0.95523 0.90315 1.23324 1.01117 0.98801 0.95207 1.23537 0.83764 1.01041 0.95076 1.88366 1.28737 1.73608 1.42767 1.23293 0.96427 0.95596 0.86994 1.22220 0.93889 0.90671 1.00131 0.91113 0.91610 0.88697 0.95856 0.98582 0.92380 0.87245 0.86230 0.91661 0.96421 0.90122 0.95913 0.90867 0.90253 0.92432 0.90195 0.91153 0.90012 0.89360 0.88911 0.92334 0.88684 0.90377 0.92140 0.91264 0.95697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.35 10.24 127.77 1.31 3.66 16 2 N -0.61 -26.43 2.86 -851.13 -2.43 -28.87 16 3 C 0.26 14.23 5.16 85.63 0.44 14.67 16 4 C -0.54 -31.73 9.39 25.60 0.24 -31.49 16 5 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 6 C 0.00 0.26 5.46 84.66 0.46 0.72 16 7 N -0.93 -57.00 13.29 21.45 0.28 -56.71 16 8 Si 0.97 45.41 29.54 68.60 2.03 47.43 16 9 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 10 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 12 C 0.49 20.86 7.67 87.66 0.67 21.53 16 13 O -0.60 -31.94 15.56 -3.03 -0.05 -31.98 16 14 C -0.11 -3.21 4.18 29.85 0.12 -3.08 16 15 C 0.08 2.31 4.25 86.30 0.37 2.68 16 16 N -0.53 -11.54 4.66 -896.35 -4.17 -15.72 16 17 C 0.04 0.82 5.29 86.33 0.46 1.27 16 18 C -0.11 -1.49 6.09 30.65 0.19 -1.30 16 19 C -0.11 -1.36 5.29 30.68 0.16 -1.20 16 20 C -0.08 -1.04 2.26 -10.74 -0.02 -1.07 16 21 H 0.08 1.14 7.26 -2.39 -0.02 1.12 16 22 C -0.09 -1.00 4.07 30.59 0.12 -0.87 16 23 C -0.12 -1.55 2.81 -9.54 -0.03 -1.58 16 24 H 0.08 1.17 6.61 -2.39 -0.02 1.15 16 25 C -0.15 -1.57 6.62 32.05 0.21 -1.36 16 26 C 0.04 0.58 7.78 72.65 0.57 1.15 16 27 O -0.41 -8.26 11.36 -148.98 -1.69 -9.95 16 28 C 0.05 0.84 6.44 72.45 0.47 1.30 16 29 C 0.06 1.11 4.51 86.33 0.39 1.50 16 30 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.07 2.07 8.07 -2.39 -0.02 2.05 16 32 H 0.09 2.11 6.44 -2.38 -0.02 2.09 16 33 H 0.02 1.30 8.07 -2.39 -0.02 1.29 16 34 H 0.00 -0.25 7.42 -2.39 -0.02 -0.27 16 35 H 0.27 15.29 8.31 -92.70 -0.77 14.52 16 36 H 0.11 2.60 5.69 -2.39 -0.01 2.58 16 37 H 0.12 2.81 8.11 -2.39 -0.02 2.79 16 38 H 0.06 2.05 7.94 -2.38 -0.02 2.03 16 39 H 0.02 0.58 8.08 -2.39 -0.02 0.56 16 40 H 0.08 1.44 6.21 -2.39 -0.01 1.42 16 41 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.08 0.70 8.09 -2.39 -0.02 0.68 16 48 H 0.09 0.79 8.04 -2.38 -0.02 0.77 16 49 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 50 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 51 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 52 H 0.08 1.08 7.72 -2.39 -0.02 1.06 16 53 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 54 H 0.07 1.38 6.49 -2.39 -0.02 1.37 16 55 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -76.52 420.15 0.93 -75.59 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 0.83 Total: 13.69 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 6.13 Total: 6.52 kcal Atomic # 7 Polarization: -94.98 SS G_CDS: -6.32 Total: -101.30 kcal Atomic # 8 Polarization: -40.19 SS G_CDS: -1.74 Total: -41.93 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Total: -76.52 0.93 -75.59 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375825058.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.775 kcal (2) G-P(sol) polarization free energy of solvation -76.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds