Wall clock time and date at job start Tue Mar 31 2020 22:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46505 * 120.00257 * 2 1 4 4 C 1.50703 * 109.47055 * 270.00664 * 3 2 1 5 5 H 1.07992 * 120.00479 * 359.97438 * 4 3 2 6 6 C 1.37885 * 119.99484 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99422 * 179.97438 * 6 4 3 8 8 Si 1.86796 * 120.00235 * 359.97438 * 6 4 3 9 9 H 1.48501 * 109.47314 * 90.00006 * 8 6 4 10 10 H 1.48498 * 109.47094 * 210.00308 * 8 6 4 11 11 H 1.48507 * 109.47069 * 329.99756 * 8 6 4 12 12 C 1.34779 * 120.00065 * 180.02562 * 2 1 3 13 13 O 1.21280 * 119.99623 * 179.97438 * 12 2 1 14 14 C 1.50693 * 119.99978 * 359.97438 * 12 2 1 15 15 C 1.52996 * 109.47161 * 180.02562 * 14 12 2 16 16 N 1.46907 * 109.47006 * 180.02562 * 15 14 12 17 17 C 1.46850 * 111.00004 * 294.20617 * 16 15 14 18 18 C 1.53029 * 109.52167 * 174.16069 * 17 16 15 19 19 C 1.53117 * 109.27938 * 59.18675 * 18 17 16 20 20 C 1.53119 * 109.15796 * 302.34063 * 19 18 17 21 21 H 1.08995 * 109.50660 * 297.71686 * 20 19 18 22 22 C 1.53001 * 109.50421 * 177.59554 * 20 19 18 23 23 C 1.53003 * 109.47467 * 174.32442 * 22 20 19 24 24 H 1.08997 * 110.45254 * 51.95378 * 23 22 20 25 25 C 1.54506 * 110.51225 * 174.56011 * 23 22 20 26 26 C 1.54480 * 104.05971 * 118.64485 * 25 23 22 27 27 O 1.44425 * 104.80585 * 23.97787 * 26 25 23 28 28 C 1.44420 * 105.27275 * 319.48679 * 27 26 25 29 29 C 1.46850 * 110.99591 * 170.00398 * 16 15 14 30 30 H 1.09001 * 109.46998 * 269.99709 * 1 2 3 31 31 H 1.09003 * 109.47593 * 29.99581 * 1 2 3 32 32 H 1.09002 * 109.47465 * 149.99984 * 1 2 3 33 33 H 1.09002 * 109.46505 * 30.00220 * 3 2 1 34 34 H 1.08991 * 109.47415 * 150.00140 * 3 2 1 35 35 H 0.97004 * 119.99488 * 179.97438 * 7 6 4 36 36 H 1.09002 * 109.47534 * 59.99845 * 14 12 2 37 37 H 1.09004 * 109.47168 * 300.00513 * 14 12 2 38 38 H 1.09003 * 109.47032 * 60.00303 * 15 14 12 39 39 H 1.08992 * 109.47228 * 299.99692 * 15 14 12 40 40 H 1.08993 * 109.46874 * 294.18315 * 17 16 15 41 41 H 1.09010 * 109.45663 * 54.15853 * 17 16 15 42 42 H 1.09009 * 109.50402 * 179.12413 * 18 17 16 43 43 H 1.08999 * 109.50580 * 299.24093 * 18 17 16 44 44 H 1.09003 * 109.52585 * 182.43795 * 19 18 17 45 45 H 1.08996 * 109.52471 * 62.24740 * 19 18 17 46 46 H 1.09002 * 109.46932 * 294.32502 * 22 20 19 47 47 H 1.08995 * 109.47165 * 54.32026 * 22 20 19 48 48 H 1.08997 * 110.51235 * 237.28683 * 25 23 22 49 49 H 1.09001 * 110.51172 * 0.02562 * 25 23 22 50 50 H 1.09004 * 110.37266 * 142.80712 * 26 25 23 51 51 H 1.09004 * 110.37415 * 265.14618 * 26 25 23 52 52 H 1.09000 * 110.37780 * 281.68157 * 28 27 26 53 53 H 1.09001 * 110.37339 * 159.34203 * 28 27 26 54 54 H 1.08995 * 109.46756 * 65.82373 * 29 16 15 55 55 H 1.08996 * 109.46218 * 305.84832 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4485 1.7038 -1.4208 5 1 2.0979 1.0960 -2.2417 6 6 3.1259 2.8781 -1.6727 7 7 3.3454 3.2576 -2.9127 8 14 3.7318 3.9299 -0.2529 9 1 5.1051 3.5092 0.1241 10 1 3.7466 5.3565 -0.6648 11 1 2.8250 3.7602 0.9110 12 6 2.1388 -1.1672 -0.0005 13 8 3.3516 -1.1671 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 6 2.3796 -3.6352 -0.0005 16 7 1.6450 -4.9074 -0.0011 17 6 0.8947 -5.0824 1.2490 18 6 0.0304 -6.3418 1.1546 19 6 0.9304 -7.5549 0.9037 20 6 1.7364 -7.3261 -0.3779 21 1 1.0560 -7.2367 -1.2247 22 6 2.6824 -8.5071 -0.6041 23 6 3.3840 -8.3474 -1.9544 24 1 3.8422 -7.3614 -2.0313 25 6 4.4448 -9.4540 -2.1476 26 6 3.9637 -10.2206 -3.3996 27 8 3.1495 -9.2720 -4.1229 28 6 2.3875 -8.5763 -3.1124 29 6 2.5513 -6.0381 -0.2391 30 1 -0.3633 -0.0001 1.0277 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3634 -0.8900 -0.5138 33 1 1.6084 2.0283 0.5139 34 1 3.1499 1.1384 0.5138 35 1 3.8217 4.0839 -3.0899 36 1 0.7583 -2.5299 -0.8903 37 1 0.7590 -2.5302 0.8897 38 1 3.0062 -3.5774 0.8895 39 1 3.0062 -3.5775 -0.8905 40 1 1.5922 -5.1821 2.0805 41 1 0.2554 -4.2149 1.4133 42 1 -0.5146 -6.4800 2.0885 43 1 -0.6769 -6.2370 0.3319 44 1 0.3154 -8.4480 0.7926 45 1 1.6119 -7.6831 1.7446 46 1 3.4272 -8.5336 0.1914 47 1 2.1119 -9.4358 -0.5986 48 1 5.4270 -9.0152 -2.3226 49 1 4.4691 -10.1152 -1.2814 50 1 4.8153 -10.5296 -4.0058 51 1 3.3693 -11.0869 -3.1090 52 1 1.5514 -9.1904 -2.7778 53 1 2.0281 -7.6222 -3.4980 54 1 3.2412 -6.1334 0.5993 55 1 3.1154 -5.8648 -1.1555 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000375825059.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:38 Heat of formation + Delta-G solvation = -117.753215 kcal Electronic energy + Delta-G solvation = -30093.089381 eV Core-core repulsion = 26128.165533 eV Total energy + Delta-G solvation = -3964.923848 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.01385 -40.61460 -39.67196 -36.73112 -36.17199 -34.73113 -34.19580 -31.97553 -31.81976 -30.14841 -29.79943 -27.38280 -26.69100 -26.07269 -24.25193 -24.12038 -23.20940 -22.00165 -20.97905 -20.52698 -19.86919 -19.16237 -18.12165 -17.39592 -17.13946 -16.85446 -16.64648 -16.52039 -16.35252 -16.11837 -15.63311 -15.43848 -15.18092 -14.82310 -14.58017 -14.48836 -14.22504 -14.09566 -13.73461 -13.67790 -13.65011 -13.55265 -13.33502 -13.30600 -13.06280 -12.81079 -12.56231 -12.41681 -12.35685 -12.19923 -12.16796 -12.02324 -11.91354 -11.75995 -11.68483 -11.57103 -11.32533 -11.06356 -10.90223 -10.84701 -10.72781 -10.66986 -9.40172 -9.31115 -8.35380 -6.40621 1.31229 1.35570 1.44149 1.78605 2.27095 2.29906 2.93525 2.99037 3.07902 3.59135 3.68167 3.79867 3.87280 3.93034 3.96634 4.06165 4.13950 4.17185 4.23011 4.31612 4.36438 4.39446 4.45667 4.51808 4.54929 4.62271 4.66722 4.68735 4.76135 4.80325 4.81404 4.83753 4.87507 4.90292 4.94142 4.95136 4.97431 4.97696 5.02945 5.06266 5.09233 5.14481 5.18533 5.28429 5.34940 5.42167 5.44668 5.58447 5.61259 5.89379 6.06221 6.18701 6.22636 6.60724 6.69308 7.19917 7.41105 8.81740 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014109 B = 0.002169 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.063958 B =12908.787799 C =14167.714592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.609 5.609 3 C 0.222 3.778 4 C -0.536 4.536 5 H 0.027 0.973 6 C 0.008 3.992 7 N -0.946 5.946 8 Si 0.950 3.050 9 H -0.277 1.277 10 H -0.274 1.274 11 H -0.237 1.237 12 C 0.495 3.505 13 O -0.599 6.599 14 C -0.115 4.115 15 C 0.081 3.919 16 N -0.538 5.538 17 C 0.045 3.955 18 C -0.112 4.112 19 C -0.113 4.113 20 C -0.078 4.078 21 H 0.076 0.924 22 C -0.094 4.094 23 C -0.124 4.124 24 H 0.071 0.929 25 C -0.150 4.150 26 C 0.038 3.962 27 O -0.409 6.409 28 C 0.048 3.952 29 C 0.059 3.941 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.051 0.949 34 H 0.017 0.983 35 H 0.269 0.731 36 H 0.110 0.890 37 H 0.120 0.880 38 H 0.026 0.974 39 H 0.056 0.944 40 H 0.027 0.973 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.059 0.941 46 H 0.069 0.931 47 H 0.083 0.917 48 H 0.070 0.930 49 H 0.095 0.905 50 H 0.094 0.906 51 H 0.072 0.928 52 H 0.074 0.926 53 H 0.083 0.917 54 H 0.027 0.973 55 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.452 -29.099 10.669 32.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.340 5.340 3 C 0.100 3.900 4 C -0.575 4.575 5 H 0.045 0.955 6 C -0.190 4.190 7 N -0.586 5.586 8 Si 0.773 3.227 9 H -0.203 1.203 10 H -0.199 1.199 11 H -0.160 1.160 12 C 0.285 3.715 13 O -0.481 6.481 14 C -0.154 4.154 15 C -0.047 4.047 16 N -0.263 5.263 17 C -0.082 4.082 18 C -0.150 4.150 19 C -0.151 4.151 20 C -0.097 4.097 21 H 0.095 0.905 22 C -0.132 4.132 23 C -0.143 4.143 24 H 0.089 0.911 25 C -0.187 4.187 26 C -0.038 4.038 27 O -0.329 6.329 28 C -0.029 4.029 29 C -0.069 4.069 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.108 0.892 33 H 0.069 0.931 34 H 0.035 0.965 35 H 0.077 0.923 36 H 0.129 0.871 37 H 0.138 0.862 38 H 0.044 0.956 39 H 0.075 0.925 40 H 0.045 0.955 41 H 0.102 0.898 42 H 0.100 0.900 43 H 0.089 0.911 44 H 0.098 0.902 45 H 0.078 0.922 46 H 0.088 0.912 47 H 0.102 0.898 48 H 0.089 0.911 49 H 0.114 0.886 50 H 0.113 0.887 51 H 0.090 0.910 52 H 0.092 0.908 53 H 0.101 0.899 54 H 0.045 0.955 55 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.138 -28.899 9.960 31.631 hybrid contribution 1.469 1.135 0.524 1.928 sum -6.670 -27.764 10.483 30.417 Atomic orbital electron populations 1.21985 0.77448 1.04049 1.03026 1.47993 1.08572 1.05952 1.71451 1.19336 0.92743 0.82700 0.95253 1.21566 1.36815 1.06692 0.92419 0.95496 1.25903 0.95311 0.99024 0.98730 1.70061 1.42731 1.24486 1.21327 0.85680 0.79510 0.77728 0.79804 1.20279 1.19887 1.15983 1.21393 0.87802 0.86794 0.75557 1.90629 1.16680 1.88267 1.52537 1.21554 0.98862 0.88813 1.06212 1.21575 0.94282 0.88461 1.00424 1.61925 1.27368 1.01043 1.35924 1.22300 0.96779 1.00033 0.89132 1.21569 0.97657 0.92998 1.02747 1.21631 0.98292 0.98474 0.96675 1.21173 0.96837 0.92563 0.99136 0.90543 1.21613 0.98180 0.98227 0.95192 1.22592 0.96099 0.99670 0.95896 0.91095 1.23023 0.99023 0.97628 0.99072 1.23591 0.94930 0.92199 0.93092 1.89107 1.58331 1.53663 1.31808 1.23610 0.94278 0.97137 0.87862 1.22211 0.93916 0.90760 1.00004 0.90042 0.91692 0.89151 0.93082 0.96460 0.92251 0.87146 0.86245 0.95610 0.92549 0.95491 0.89843 0.89993 0.91143 0.90217 0.92236 0.91192 0.89838 0.91146 0.88603 0.88735 0.90960 0.90801 0.89914 0.95468 0.91797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.16 10.24 127.77 1.31 3.47 16 2 N -0.61 -24.89 2.86 -851.14 -2.43 -27.33 16 3 C 0.22 11.01 4.23 85.63 0.36 11.37 16 4 C -0.54 -32.22 9.94 25.60 0.25 -31.96 16 5 H 0.03 1.81 8.06 -2.91 -0.02 1.78 16 6 C 0.01 0.49 5.47 84.66 0.46 0.95 16 7 N -0.95 -60.82 13.96 21.45 0.30 -60.52 16 8 Si 0.95 45.09 27.47 68.60 1.88 46.97 16 9 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.24 -10.02 6.54 99.48 0.65 -9.37 16 12 C 0.50 20.23 7.67 87.65 0.67 20.90 16 13 O -0.60 -30.67 15.56 -3.03 -0.05 -30.72 16 14 C -0.11 -3.17 4.18 29.84 0.12 -3.04 16 15 C 0.08 2.30 4.25 86.30 0.37 2.66 16 16 N -0.54 -11.63 4.66 -896.36 -4.17 -15.81 16 17 C 0.05 0.77 5.29 86.32 0.46 1.22 16 18 C -0.11 -1.39 6.09 30.64 0.19 -1.21 16 19 C -0.11 -1.27 5.29 30.67 0.16 -1.11 16 20 C -0.08 -1.06 2.29 -10.74 -0.02 -1.09 16 21 H 0.08 1.14 7.50 -2.39 -0.02 1.13 16 22 C -0.09 -1.02 3.89 30.60 0.12 -0.90 16 23 C -0.12 -1.76 3.00 -9.78 -0.03 -1.79 16 24 H 0.07 1.25 6.36 -2.39 -0.02 1.24 16 25 C -0.15 -1.83 6.74 31.61 0.21 -1.61 16 26 C 0.04 0.53 7.63 72.49 0.55 1.08 16 27 O -0.41 -8.58 11.65 -148.98 -1.74 -10.32 16 28 C 0.05 0.78 6.45 72.49 0.47 1.25 16 29 C 0.06 1.14 4.51 86.33 0.39 1.53 16 30 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.06 1.98 8.07 -2.39 -0.02 1.96 16 32 H 0.09 2.02 6.44 -2.39 -0.02 2.01 16 33 H 0.05 2.30 7.13 -2.39 -0.02 2.28 16 34 H 0.02 0.92 6.85 -2.39 -0.02 0.90 16 35 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 36 H 0.11 2.82 7.40 -2.39 -0.02 2.80 16 37 H 0.12 2.49 6.39 -2.38 -0.02 2.47 16 38 H 0.03 0.79 8.08 -2.39 -0.02 0.78 16 39 H 0.06 1.88 7.94 -2.39 -0.02 1.86 16 40 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.08 1.30 6.21 -2.38 -0.01 1.29 16 42 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 43 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.08 0.68 7.95 -2.39 -0.02 0.66 16 48 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.10 0.81 7.73 -2.39 -0.02 0.79 16 50 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 51 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 52 H 0.07 0.97 7.74 -2.39 -0.02 0.95 16 53 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 54 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 55 H 0.06 1.39 6.37 -2.39 -0.02 1.38 16 Total: -1.00 -80.07 416.32 0.62 -79.45 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: 0.78 Total: 16.55 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: 6.05 Total: 1.72 kcal Atomic # 7 Polarization: -97.35 SS G_CDS: -6.31 Total: -103.65 kcal Atomic # 8 Polarization: -39.26 SS G_CDS: -1.78 Total: -41.04 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.88 Total: 46.97 kcal Total: -80.07 0.62 -79.45 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375825059.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.303 kcal (2) G-P(sol) polarization free energy of solvation -80.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds