Wall clock time and date at job start Tue Mar 31 2020 22:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46499 * 119.99815 * 2 1 4 4 C 1.50694 * 109.46837 * 269.99714 * 3 2 1 5 5 H 1.08005 * 120.00644 * 0.02562 * 4 3 2 6 6 C 1.37883 * 119.99995 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99842 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00132 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47297 * 59.99926 * 8 6 4 10 10 H 1.48501 * 109.46950 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47007 * 299.99494 * 8 6 4 12 12 C 1.34774 * 119.99711 * 179.97438 * 2 1 3 13 13 O 1.21287 * 119.99904 * 180.02562 * 12 2 1 14 14 C 1.50698 * 120.00316 * 359.97438 * 12 2 1 15 15 C 1.53000 * 109.47229 * 180.02562 * 14 12 2 16 16 N 1.46900 * 109.47272 * 180.02562 * 15 14 12 17 17 C 1.46845 * 111.00045 * 45.79142 * 16 15 14 18 18 C 1.53166 * 109.55463 * 185.84196 * 17 16 15 19 19 C 1.53120 * 109.20873 * 300.85535 * 18 17 16 20 20 C 1.53123 * 109.21163 * 57.62805 * 19 18 17 21 21 H 1.08996 * 109.50077 * 62.25431 * 20 19 18 22 22 C 1.52994 * 109.50152 * 182.33553 * 20 19 18 23 23 C 1.53000 * 109.47234 * 294.99543 * 22 20 19 24 24 H 1.09004 * 110.74728 * 57.01926 * 23 22 20 25 25 C 1.55304 * 110.85178 * 180.71916 * 23 22 20 26 26 C 1.54940 * 100.94426 * 152.32949 * 25 23 22 27 27 O 1.43653 * 105.13457 * 323.54989 * 26 25 23 28 28 C 1.43235 * 109.96861 * 24.43334 * 27 26 25 29 29 C 1.46848 * 110.99918 * 169.99731 * 16 15 14 30 30 H 1.09004 * 109.47251 * 270.00155 * 1 2 3 31 31 H 1.09000 * 109.46865 * 30.00332 * 1 2 3 32 32 H 1.09002 * 109.46961 * 150.00164 * 1 2 3 33 33 H 1.08998 * 109.47368 * 29.99594 * 3 2 1 34 34 H 1.09004 * 109.46730 * 149.99932 * 3 2 1 35 35 H 0.97002 * 119.99905 * 179.97438 * 7 6 4 36 36 H 1.09001 * 109.46912 * 60.00729 * 14 12 2 37 37 H 1.08995 * 109.47445 * 300.00072 * 14 12 2 38 38 H 1.09002 * 109.47284 * 59.99977 * 15 14 12 39 39 H 1.09007 * 109.47246 * 300.00417 * 15 14 12 40 40 H 1.09003 * 109.45905 * 305.85870 * 17 16 15 41 41 H 1.09002 * 109.46112 * 65.82067 * 17 16 15 42 42 H 1.09004 * 109.59002 * 180.90917 * 18 17 16 43 43 H 1.08997 * 109.49280 * 60.74777 * 18 17 16 44 44 H 1.09002 * 109.52427 * 297.69078 * 19 18 17 45 45 H 1.08995 * 109.52208 * 177.56397 * 19 18 17 46 46 H 1.09000 * 109.47628 * 54.99741 * 22 20 19 47 47 H 1.09006 * 109.47212 * 175.00099 * 22 20 19 48 48 H 1.09004 * 111.12382 * 270.24495 * 25 23 22 49 49 H 1.08998 * 111.12270 * 34.40118 * 25 23 22 50 50 H 1.09000 * 110.30667 * 204.64366 * 26 25 23 51 51 H 1.08992 * 110.31440 * 82.46852 * 26 25 23 52 52 H 1.08998 * 109.83083 * 238.77483 * 28 27 26 53 53 H 1.09001 * 109.83189 * 117.79917 * 28 27 26 54 54 H 1.09006 * 109.46097 * 54.14433 * 29 16 15 55 55 H 1.08996 * 109.46972 * 294.17743 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1269 2.8774 -1.6728 7 7 3.5542 3.6176 -0.6732 8 14 3.4376 3.4169 -3.4340 9 1 2.1399 3.5953 -4.1334 10 1 4.1802 4.7030 -3.4340 11 1 4.2395 2.3818 -4.1346 12 6 2.1388 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0017 15 6 2.3796 -3.6352 0.0027 16 7 1.6451 -4.9074 0.0032 17 6 0.5545 -4.8858 -0.9798 18 6 -0.2771 -6.1656 -0.8511 19 6 0.6261 -7.3792 -1.0878 20 6 1.7806 -7.3518 -0.0824 21 1 1.3834 -7.4260 0.9299 22 6 2.7194 -8.5297 -0.3504 23 6 1.9805 -9.8422 -0.0817 24 1 1.0791 -9.9096 -0.6910 25 6 2.9113 -11.0609 -0.3271 26 6 2.2904 -12.1039 0.6358 27 8 1.8712 -11.3506 1.7849 28 6 1.6419 -9.9853 1.4177 29 6 2.5513 -6.0384 -0.2339 30 1 -0.3634 0.0000 1.0277 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3633 -0.8900 -0.5138 33 1 1.6084 2.0284 0.5138 34 1 3.1499 1.1384 0.5139 35 1 4.0316 4.4432 -0.8505 36 1 0.7585 -2.5307 -0.8881 37 1 0.7590 -2.5295 0.8919 38 1 3.0063 -3.5767 0.8927 39 1 3.0063 -3.5783 -0.8873 40 1 -0.0817 -4.0197 -0.7974 41 1 0.9724 -4.8240 -1.9846 42 1 -1.0772 -6.1576 -1.5914 43 1 -0.7067 -6.2212 0.1491 44 1 1.0250 -7.3443 -2.1016 45 1 0.0489 -8.2942 -0.9548 46 1 3.0476 -8.5037 -1.3895 47 1 3.5866 -8.4600 0.3064 48 1 2.8526 -11.3980 -1.3621 49 1 3.9399 -10.8320 -0.0482 50 1 3.0359 -12.8460 0.9215 51 1 1.4335 -12.5881 0.1677 52 1 2.2854 -9.3311 2.0060 53 1 0.5965 -9.7273 1.5870 54 1 3.3655 -6.0094 0.4904 55 1 2.9599 -5.9713 -1.2421 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000375825060.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:41 Heat of formation + Delta-G solvation = -118.384119 kcal Electronic energy + Delta-G solvation = -29849.327670 eV Core-core repulsion = 25884.376464 eV Total energy + Delta-G solvation = -3964.951206 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.02299 -40.58829 -39.68330 -36.71358 -36.29517 -34.75610 -33.96546 -32.19072 -31.60111 -30.07204 -29.45739 -27.33694 -26.84286 -26.15382 -24.58811 -23.79085 -23.18054 -22.21282 -21.07408 -20.37507 -19.84086 -18.71514 -18.11008 -17.67984 -17.14078 -16.97043 -16.78386 -16.42542 -16.19057 -15.74274 -15.71593 -15.40045 -15.20204 -14.86482 -14.52412 -14.45519 -14.15527 -14.03070 -13.83706 -13.63833 -13.62502 -13.45537 -13.32214 -13.18251 -13.01685 -12.81056 -12.63164 -12.45879 -12.39275 -12.21583 -12.19385 -12.15187 -11.90018 -11.74172 -11.70243 -11.66403 -11.32984 -11.04076 -10.96785 -10.65773 -10.59798 -10.46162 -9.43038 -9.29924 -8.23712 -6.39019 1.34852 1.39216 1.46668 1.82826 2.27132 2.41234 2.91080 3.02114 3.05485 3.52421 3.65211 3.78678 3.88924 3.93741 3.97503 4.01668 4.06114 4.18396 4.28615 4.31993 4.37662 4.39406 4.44052 4.52200 4.58845 4.62416 4.67868 4.72339 4.78425 4.78572 4.83135 4.87739 4.92080 4.95339 4.96640 4.96968 4.99139 5.00972 5.04359 5.09008 5.12712 5.19330 5.22257 5.30137 5.32327 5.45984 5.54491 5.57665 5.83048 6.04371 6.05162 6.09105 6.17190 6.67872 6.78308 7.26541 7.47402 8.83070 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.024376 B = 0.001791 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.408426 B =15627.087676 C =15817.813104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.611 5.611 3 C 0.258 3.742 4 C -0.545 4.545 5 H 0.053 0.947 6 C 0.006 3.994 7 N -0.928 5.928 8 Si 0.969 3.031 9 H -0.259 1.259 10 H -0.278 1.278 11 H -0.278 1.278 12 C 0.493 3.507 13 O -0.602 6.602 14 C -0.121 4.121 15 C 0.081 3.919 16 N -0.535 5.535 17 C 0.039 3.961 18 C -0.112 4.112 19 C -0.115 4.115 20 C -0.076 4.076 21 H 0.077 0.923 22 C -0.098 4.098 23 C -0.113 4.113 24 H 0.097 0.903 25 C -0.150 4.150 26 C 0.043 3.957 27 O -0.416 6.416 28 C 0.051 3.949 29 C 0.058 3.942 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.024 0.976 34 H -0.004 1.004 35 H 0.267 0.733 36 H 0.113 0.887 37 H 0.122 0.878 38 H 0.066 0.934 39 H 0.017 0.983 40 H 0.088 0.912 41 H 0.024 0.976 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.057 0.943 45 H 0.079 0.921 46 H 0.071 0.929 47 H 0.064 0.936 48 H 0.098 0.902 49 H 0.077 0.923 50 H 0.090 0.910 51 H 0.068 0.932 52 H 0.066 0.934 53 H 0.070 0.930 54 H 0.067 0.933 55 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.511 -30.336 -0.984 32.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.342 5.342 3 C 0.136 3.864 4 C -0.583 4.583 5 H 0.071 0.929 6 C -0.193 4.193 7 N -0.567 5.567 8 Si 0.793 3.207 9 H -0.183 1.183 10 H -0.203 1.203 11 H -0.204 1.204 12 C 0.282 3.718 13 O -0.484 6.484 14 C -0.160 4.160 15 C -0.047 4.047 16 N -0.260 5.260 17 C -0.089 4.089 18 C -0.150 4.150 19 C -0.152 4.152 20 C -0.095 4.095 21 H 0.096 0.904 22 C -0.136 4.136 23 C -0.132 4.132 24 H 0.115 0.885 25 C -0.188 4.188 26 C -0.033 4.033 27 O -0.336 6.336 28 C -0.026 4.026 29 C -0.070 4.070 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.113 0.887 33 H 0.042 0.958 34 H 0.014 0.986 35 H 0.076 0.924 36 H 0.131 0.869 37 H 0.140 0.860 38 H 0.084 0.916 39 H 0.036 0.964 40 H 0.107 0.893 41 H 0.043 0.957 42 H 0.099 0.901 43 H 0.090 0.910 44 H 0.076 0.924 45 H 0.097 0.903 46 H 0.090 0.910 47 H 0.082 0.918 48 H 0.117 0.883 49 H 0.095 0.905 50 H 0.108 0.892 51 H 0.086 0.914 52 H 0.084 0.916 53 H 0.088 0.912 54 H 0.086 0.914 55 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -10.068 -30.278 -0.263 31.909 hybrid contribution 1.161 1.217 -1.541 2.281 sum -8.907 -29.061 -1.804 30.449 Atomic orbital electron populations 1.21945 0.77728 1.04021 1.02667 1.48201 1.08509 1.06361 1.71134 1.18752 0.91090 0.80520 0.96019 1.21678 1.36993 1.06617 0.93023 0.92860 1.25895 0.94894 0.96424 1.02098 1.70050 1.38776 1.14798 1.33119 0.85456 0.78884 0.77349 0.79048 1.18334 1.20269 1.20397 1.21381 0.87795 0.86746 0.75838 1.90635 1.16814 1.88274 1.52678 1.21734 0.98963 0.89066 1.06261 1.21620 0.94678 0.87959 1.00482 1.62050 1.11918 1.01710 1.50276 1.22411 0.93474 1.00365 0.92625 1.21599 0.97566 0.92917 1.02891 1.21682 0.96362 0.98656 0.98493 1.21146 0.95622 0.92167 1.00571 0.90425 1.21505 0.97638 0.92081 1.02345 1.22717 0.99665 0.95089 0.95687 0.88510 1.23340 0.99716 0.94469 1.01258 1.23539 0.99022 0.94761 0.85961 1.88376 1.89018 1.21569 1.34654 1.23316 1.01046 0.82680 0.95518 1.22171 0.94909 0.90699 0.99223 0.91058 0.91615 0.88667 0.95834 0.98579 0.92382 0.86885 0.86010 0.91581 0.96423 0.89332 0.95745 0.90100 0.91015 0.92387 0.90283 0.90988 0.91775 0.88323 0.90451 0.89203 0.91370 0.91606 0.91159 0.91435 0.95550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.29 10.24 127.77 1.31 3.60 16 2 N -0.61 -26.16 2.86 -851.13 -2.43 -28.60 16 3 C 0.26 14.19 5.16 85.63 0.44 14.63 16 4 C -0.54 -31.85 9.39 25.60 0.24 -31.61 16 5 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 6 C 0.01 0.34 5.46 84.66 0.46 0.81 16 7 N -0.93 -56.80 13.29 21.45 0.28 -56.52 16 8 Si 0.97 45.22 29.54 68.60 2.03 47.25 16 9 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 12 C 0.49 20.72 7.67 87.66 0.67 21.39 16 13 O -0.60 -31.92 15.56 -3.05 -0.05 -31.97 16 14 C -0.12 -3.34 3.50 29.85 0.10 -3.23 16 15 C 0.08 2.31 4.56 86.30 0.39 2.70 16 16 N -0.54 -11.66 4.81 -896.08 -4.31 -15.97 16 17 C 0.04 0.69 4.85 86.37 0.42 1.11 16 18 C -0.11 -1.47 6.11 30.69 0.19 -1.28 16 19 C -0.11 -1.36 4.99 30.68 0.15 -1.20 16 20 C -0.08 -1.05 2.27 -10.74 -0.02 -1.07 16 21 H 0.08 1.16 7.34 -2.39 -0.02 1.14 16 22 C -0.10 -1.11 4.08 30.59 0.12 -0.98 16 23 C -0.11 -1.15 2.81 -9.53 -0.03 -1.17 16 24 H 0.10 0.83 6.58 -2.39 -0.02 0.81 16 25 C -0.15 -1.37 6.62 32.05 0.21 -1.16 16 26 C 0.04 0.50 7.78 72.65 0.56 1.06 16 27 O -0.42 -7.53 11.36 -148.98 -1.69 -9.22 16 28 C 0.05 0.71 6.49 72.45 0.47 1.18 16 29 C 0.06 1.13 4.71 86.33 0.41 1.53 16 30 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.06 2.04 8.07 -2.39 -0.02 2.02 16 32 H 0.09 2.04 6.44 -2.39 -0.02 2.03 16 33 H 0.02 1.31 8.07 -2.39 -0.02 1.29 16 34 H 0.00 -0.25 7.42 -2.39 -0.02 -0.27 16 35 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 36 H 0.11 2.60 5.47 -2.39 -0.01 2.59 16 37 H 0.12 2.76 8.11 -2.39 -0.02 2.74 16 38 H 0.07 2.10 8.10 -2.39 -0.02 2.08 16 39 H 0.02 0.58 8.04 -2.38 -0.02 0.56 16 40 H 0.09 1.44 5.81 -2.39 -0.01 1.43 16 41 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 42 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.06 0.72 8.14 -2.39 -0.02 0.71 16 45 H 0.08 0.72 6.65 -2.39 -0.02 0.70 16 46 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.06 0.80 8.07 -2.38 -0.02 0.78 16 48 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 49 H 0.08 0.75 8.04 -2.39 -0.02 0.73 16 50 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 51 H 0.07 0.64 8.14 -2.39 -0.02 0.63 16 52 H 0.07 0.98 7.74 -2.39 -0.02 0.96 16 53 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 54 H 0.07 1.39 8.12 -2.38 -0.02 1.37 16 55 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -76.66 419.16 0.78 -75.89 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 0.83 Total: 12.82 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: 6.11 Total: 6.31 kcal Atomic # 7 Polarization: -94.62 SS G_CDS: -6.45 Total: -101.08 kcal Atomic # 8 Polarization: -39.46 SS G_CDS: -1.74 Total: -41.19 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -76.66 0.78 -75.89 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375825060.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.497 kcal (2) G-P(sol) polarization free energy of solvation -76.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds