Wall clock time and date at job start Tue Mar 31 2020 23:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46952 * 111.00278 * 2 1 4 4 C 1.53049 * 109.36401 * 183.16964 * 3 2 1 5 5 N 1.46961 * 109.38081 * 301.62798 * 4 3 2 6 6 C 1.46894 * 111.00126 * 183.18115 * 5 4 3 7 7 C 1.52999 * 109.47261 * 87.99589 * 6 5 4 8 8 C 1.52998 * 109.46027 * 65.85142 * 7 6 5 9 9 C 1.53039 * 109.46277 * 305.87807 * 7 6 5 10 10 C 1.53192 * 109.31088 * 178.60034 * 9 7 6 11 11 N 1.46923 * 108.77032 * 54.65632 * 10 9 7 12 12 C 1.34773 * 120.63241 * 126.35355 * 11 10 9 13 13 O 1.21592 * 120.00005 * 174.93451 * 12 11 10 14 14 N 1.34771 * 120.00011 * 354.94238 * 12 11 10 15 15 C 1.46501 * 119.99880 * 185.17768 * 14 12 11 16 16 C 1.50701 * 109.47199 * 179.97438 * 15 14 12 17 17 H 1.07998 * 119.99679 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00412 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00386 * 179.97438 * 18 16 15 20 20 Si 1.86810 * 119.99616 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47090 * 90.00046 * 20 18 16 22 22 H 1.48503 * 109.46648 * 210.00008 * 20 18 16 23 23 H 1.48495 * 109.47079 * 329.99503 * 20 18 16 24 24 C 1.46925 * 118.73764 * 306.38648 * 11 10 9 25 25 C 1.53042 * 109.45926 * 185.81974 * 7 6 5 26 26 C 1.46957 * 110.87808 * 59.30857 * 5 4 3 27 27 C 1.46957 * 110.99561 * 123.82273 * 2 1 3 28 28 H 1.09004 * 109.46805 * 296.18209 * 1 2 3 29 29 H 1.09001 * 109.46950 * 56.17756 * 1 2 3 30 30 H 1.08999 * 109.47334 * 176.17990 * 1 2 3 31 31 H 1.09003 * 109.47279 * 63.20682 * 3 2 1 32 32 H 1.09004 * 109.50642 * 303.14636 * 3 2 1 33 33 H 1.09009 * 109.48727 * 181.65475 * 4 3 2 34 34 H 1.08995 * 109.49160 * 61.60758 * 4 3 2 35 35 H 1.08997 * 109.46961 * 207.99793 * 6 5 4 36 36 H 1.08999 * 109.47210 * 327.99967 * 6 5 4 37 37 H 1.09004 * 109.47139 * 64.60754 * 8 7 6 38 38 H 1.08992 * 109.47898 * 184.60825 * 8 7 6 39 39 H 1.09000 * 109.46959 * 304.60976 * 8 7 6 40 40 H 1.08994 * 109.49537 * 298.56220 * 9 7 6 41 41 H 1.08993 * 109.49438 * 58.66191 * 9 7 6 42 42 H 1.09003 * 109.60028 * 294.86308 * 10 9 7 43 43 H 1.09004 * 109.58521 * 174.43942 * 10 9 7 44 44 H 0.96999 * 120.00301 * 5.17983 * 14 12 11 45 45 H 1.09005 * 109.47243 * 299.99624 * 15 14 12 46 46 H 1.08994 * 109.47391 * 59.99714 * 15 14 12 47 47 H 0.96997 * 120.00256 * 179.97438 * 19 18 16 48 48 H 1.09007 * 109.58163 * 293.81946 * 24 11 10 49 49 H 1.09001 * 109.59179 * 173.39306 * 24 11 10 50 50 H 1.08990 * 109.50209 * 301.34111 * 25 7 6 51 51 H 1.09003 * 109.49742 * 61.40760 * 25 7 6 52 52 H 1.09001 * 109.48526 * 60.64947 * 26 5 4 53 53 H 1.09003 * 109.48584 * 180.68578 * 26 5 4 54 54 H 1.09003 * 109.49347 * 56.84567 * 27 2 1 55 55 H 1.09000 * 109.50580 * 296.78617 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9958 1.3719 0.0000 4 6 3.5236 1.3289 -0.0798 5 7 4.0502 0.5653 1.0600 6 6 5.5191 0.5652 1.0601 7 6 6.0292 1.7909 1.8205 8 6 5.6426 1.6725 3.2961 9 6 5.4019 3.0554 1.2291 10 6 5.8877 4.2772 2.0152 11 7 7.3569 4.2802 2.0241 12 6 8.0439 5.3644 1.6133 13 8 9.2556 5.3896 1.7114 14 7 7.3878 6.4209 1.0938 15 6 8.1395 7.5515 0.5434 16 6 7.1778 8.5919 0.0300 17 1 6.1131 8.4276 0.1065 18 6 7.6570 9.7540 -0.5365 19 7 6.8177 10.6618 -0.9850 20 14 9.4986 10.0385 -0.6681 21 1 9.9917 9.4987 -1.9607 22 1 9.7805 11.4949 -0.6000 23 1 10.1874 9.3481 0.4517 24 6 8.0630 3.0783 2.4885 25 6 7.5526 1.8698 1.6974 26 6 3.5234 -0.8066 1.0595 27 6 1.9956 -0.7637 1.1398 28 1 -0.3633 0.4535 0.9223 29 1 -0.3633 0.5720 -0.8538 30 1 -0.3634 -1.0254 -0.0685 31 1 1.6935 1.8772 0.9173 32 1 1.6017 1.9130 -0.8603 33 1 3.9180 2.3447 -0.0503 34 1 3.8257 0.8483 -1.0103 35 1 5.8824 -0.3406 1.5454 36 1 5.8825 0.5978 0.0329 37 1 6.1544 0.8176 3.7383 38 1 5.9333 2.5818 3.8221 39 1 4.5647 1.5335 3.3793 40 1 5.6974 3.1536 0.1846 41 1 4.3161 2.9882 1.2958 42 1 5.5162 4.2248 3.0387 43 1 5.5233 5.1871 1.5383 44 1 6.4180 6.4328 1.0845 45 1 8.7640 7.9870 1.3235 46 1 8.7700 7.2046 -0.2752 47 1 7.1549 11.4795 -1.3832 48 1 7.8689 2.9281 3.5506 49 1 9.1339 3.1970 2.3239 50 1 7.9976 0.9588 2.0973 51 1 7.8276 1.9788 0.6483 52 1 3.8253 -1.3117 0.1420 53 1 3.9181 -1.3480 1.9194 54 1 1.6013 -1.7795 1.1104 55 1 1.6937 -0.2832 2.0704 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408364429.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:16 Heat of formation + Delta-G solvation = -25.722276 kcal Electronic energy + Delta-G solvation = -31214.465450 eV Core-core repulsion = 27285.825114 eV Total energy + Delta-G solvation = -3928.640336 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.68168 -40.49180 -39.10788 -36.55174 -36.20751 -34.71015 -34.12556 -32.38670 -31.63054 -30.31468 -29.48586 -28.33982 -26.83643 -25.18556 -24.80293 -24.10881 -23.68759 -22.96880 -21.23581 -20.70281 -20.15958 -18.82230 -18.32446 -17.37426 -17.01950 -16.63913 -16.50944 -16.32350 -16.01334 -15.94708 -15.69136 -15.54145 -15.30519 -15.12647 -14.96842 -14.79997 -14.44908 -14.40353 -14.00116 -13.90305 -13.51945 -13.16310 -13.09978 -12.94142 -12.89113 -12.72957 -12.70529 -12.48776 -12.31746 -12.19451 -12.08932 -11.97842 -11.92601 -11.68243 -11.66042 -11.55817 -11.32452 -11.02657 -10.95121 -10.91496 -10.08412 -9.41542 -9.31438 -9.16454 -8.39816 -6.46427 1.32924 1.34772 1.48721 1.79408 2.19347 2.28843 2.90079 2.95677 3.02264 3.12751 3.74170 3.82635 3.91969 3.96803 4.10107 4.11759 4.19428 4.27933 4.36786 4.40484 4.42442 4.50902 4.57683 4.61594 4.64622 4.65085 4.69519 4.76421 4.79793 4.85611 4.87432 4.91318 4.93325 4.97362 5.01470 5.02991 5.05147 5.08064 5.11768 5.15453 5.24609 5.29435 5.34111 5.40220 5.55484 5.67112 5.69197 5.97172 6.00663 6.02679 6.19777 6.21451 6.22851 6.54547 7.10150 7.20078 7.65199 8.74902 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014430 B = 0.002584 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.909056 B =10832.775522 C =12334.617101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.560 5.560 3 C 0.058 3.942 4 C 0.041 3.959 5 N -0.533 5.533 6 C 0.071 3.929 7 C -0.042 4.042 8 C -0.130 4.130 9 C -0.120 4.120 10 C 0.106 3.894 11 N -0.624 5.624 12 C 0.694 3.306 13 O -0.645 6.645 14 N -0.724 5.724 15 C 0.252 3.748 16 C -0.544 4.544 17 H 0.058 0.942 18 C 0.029 3.971 19 N -0.930 5.930 20 Si 0.936 3.064 21 H -0.264 1.264 22 H -0.271 1.271 23 H -0.262 1.262 24 C 0.129 3.871 25 C -0.116 4.116 26 C 0.059 3.941 27 C 0.059 3.941 28 H 0.026 0.974 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.039 0.961 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.028 0.972 35 H 0.084 0.916 36 H 0.032 0.968 37 H 0.060 0.940 38 H 0.048 0.952 39 H 0.065 0.935 40 H 0.050 0.950 41 H 0.102 0.898 42 H 0.087 0.913 43 H 0.071 0.929 44 H 0.402 0.598 45 H 0.008 0.992 46 H 0.007 0.993 47 H 0.273 0.727 48 H 0.082 0.918 49 H 0.066 0.934 50 H 0.097 0.903 51 H 0.049 0.951 52 H 0.032 0.968 53 H 0.093 0.907 54 H 0.088 0.912 55 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.321 -28.056 6.659 30.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.285 5.285 3 C -0.070 4.070 4 C -0.087 4.087 5 N -0.257 5.257 6 C -0.057 4.057 7 C -0.042 4.042 8 C -0.187 4.187 9 C -0.158 4.158 10 C -0.016 4.016 11 N -0.362 5.362 12 C 0.396 3.604 13 O -0.529 6.529 14 N -0.380 5.380 15 C 0.127 3.873 16 C -0.582 4.582 17 H 0.076 0.924 18 C -0.172 4.172 19 N -0.569 5.569 20 Si 0.760 3.240 21 H -0.189 1.189 22 H -0.196 1.196 23 H -0.187 1.187 24 C 0.006 3.994 25 C -0.155 4.155 26 C -0.069 4.069 27 C -0.069 4.069 28 H 0.045 0.955 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.057 0.943 32 H 0.098 0.902 33 H 0.115 0.885 34 H 0.046 0.954 35 H 0.103 0.897 36 H 0.050 0.950 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.068 0.932 41 H 0.120 0.880 42 H 0.105 0.895 43 H 0.089 0.911 44 H 0.240 0.760 45 H 0.026 0.974 46 H 0.025 0.975 47 H 0.082 0.918 48 H 0.100 0.900 49 H 0.084 0.916 50 H 0.115 0.885 51 H 0.068 0.932 52 H 0.050 0.950 53 H 0.111 0.889 54 H 0.106 0.894 55 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -10.495 -27.856 6.618 30.494 hybrid contribution 0.272 0.804 -0.514 0.992 sum -10.223 -27.052 6.104 29.556 Atomic orbital electron populations 1.22366 0.86342 1.02772 1.00731 1.62188 1.08744 1.14133 1.43430 1.22145 0.94491 0.89342 1.01005 1.22625 0.94517 1.00058 0.91468 1.62062 1.07565 1.13779 1.42317 1.22088 0.86740 0.98279 0.98570 1.20386 0.93107 0.93860 0.96889 1.21788 1.02241 1.01300 0.93347 1.22205 1.01864 0.93422 0.98266 1.21907 0.78252 0.99505 1.01965 1.47310 1.07098 1.13302 1.68444 1.16181 0.84900 0.81002 0.78337 1.90805 1.14223 1.82983 1.64850 1.45307 1.10288 1.18687 1.63724 1.18936 0.91989 0.83801 0.92538 1.21237 0.93983 1.02414 1.40565 0.92361 1.25555 1.02512 0.95191 0.93932 1.69971 1.36651 1.09496 1.40757 0.85872 0.80285 0.78078 0.79755 1.18924 1.19623 1.18687 1.21542 0.96617 0.82585 0.98629 1.21939 0.95789 0.97796 0.99987 1.22216 0.94381 0.89216 1.01089 1.22174 0.94569 0.98727 0.91432 0.95511 0.91189 0.90554 0.94266 0.90222 0.88475 0.95418 0.89724 0.94976 0.92089 0.93306 0.91549 0.93151 0.88009 0.89495 0.91121 0.76042 0.97366 0.97505 0.91799 0.89989 0.91591 0.88490 0.93182 0.95015 0.88877 0.89412 0.94377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.60 127.69 1.23 1.53 16 2 N -0.56 -8.32 4.97 -921.92 -4.58 -12.90 16 3 C 0.06 0.90 5.62 86.31 0.49 1.38 16 4 C 0.04 0.66 4.76 86.31 0.41 1.07 16 5 N -0.53 -7.51 3.68 -895.72 -3.30 -10.81 16 6 C 0.07 0.99 4.26 86.30 0.37 1.36 16 7 C -0.04 -0.64 0.59 -52.16 -0.03 -0.68 16 8 C -0.13 -1.78 7.65 71.98 0.55 -1.23 16 9 C -0.12 -2.23 3.33 30.67 0.10 -2.13 16 10 C 0.11 2.44 5.96 86.36 0.52 2.96 16 11 N -0.62 -18.74 2.97 -836.89 -2.49 -21.23 16 12 C 0.69 28.82 8.29 179.06 1.49 30.30 16 13 O -0.65 -31.96 15.79 -4.01 -0.06 -32.03 16 14 N -0.72 -31.44 5.46 -482.30 -2.63 -34.08 16 15 C 0.25 12.99 4.50 85.63 0.39 13.37 16 16 C -0.54 -30.79 9.83 25.60 0.25 -30.54 16 17 H 0.06 3.45 7.84 -2.91 -0.02 3.43 16 18 C 0.03 1.64 5.47 84.65 0.46 2.10 16 19 N -0.93 -56.03 13.96 21.45 0.30 -55.73 16 20 Si 0.94 45.00 27.47 68.60 1.88 46.89 16 21 H -0.26 -12.26 7.11 99.48 0.71 -11.56 16 22 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 23 H -0.26 -12.67 6.54 99.48 0.65 -12.02 16 24 C 0.13 3.16 5.95 86.36 0.51 3.68 16 25 C -0.12 -2.12 4.91 30.67 0.15 -1.97 16 26 C 0.06 0.73 5.48 86.31 0.47 1.21 16 27 C 0.06 0.74 5.62 86.31 0.49 1.22 16 28 H 0.03 0.31 8.14 -2.38 -0.02 0.29 16 29 H 0.07 0.79 8.13 -2.39 -0.02 0.77 16 30 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.08 1.19 8.13 -2.38 -0.02 1.17 16 33 H 0.10 1.60 4.26 -2.38 -0.01 1.59 16 34 H 0.03 0.51 8.12 -2.39 -0.02 0.49 16 35 H 0.08 0.96 7.65 -2.39 -0.02 0.95 16 36 H 0.03 0.52 7.80 -2.39 -0.02 0.51 16 37 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 38 H 0.05 0.75 4.99 -2.39 -0.01 0.74 16 39 H 0.07 0.95 7.66 -2.39 -0.02 0.93 16 40 H 0.05 1.10 7.77 -2.39 -0.02 1.08 16 41 H 0.10 1.70 5.58 -2.39 -0.01 1.69 16 42 H 0.09 1.72 6.59 -2.39 -0.02 1.71 16 43 H 0.07 1.76 5.57 -2.38 -0.01 1.75 16 44 H 0.40 15.51 5.78 -92.71 -0.54 14.97 16 45 H 0.01 0.46 7.20 -2.38 -0.02 0.44 16 46 H 0.01 0.38 7.57 -2.39 -0.02 0.36 16 47 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 48 H 0.08 1.70 6.80 -2.38 -0.02 1.68 16 49 H 0.07 1.97 7.04 -2.39 -0.02 1.95 16 50 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 51 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 52 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 53 H 0.09 0.89 7.98 -2.39 -0.02 0.87 16 54 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 55 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 Total: -1.00 -70.67 400.92 -2.77 -73.44 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: 0.28 Total: 22.80 kcal Atomic # 6 Polarization: 15.81 SS G_CDS: 7.83 Total: 23.64 kcal Atomic # 7 Polarization: -122.04 SS G_CDS: -12.70 Total: -134.74 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -0.06 Total: -32.03 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.88 Total: 46.89 kcal Total: -70.67 -2.77 -73.44 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408364429.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.718 kcal (2) G-P(sol) polarization free energy of solvation -70.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds