Wall clock time and date at job start Tue Mar 31 2020 23:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46963 * 110.99405 * 2 1 4 4 C 1.53057 * 109.36017 * 183.18463 * 3 2 1 5 5 N 1.46959 * 109.36590 * 301.59848 * 4 3 2 6 6 C 1.46901 * 110.99753 * 183.19038 * 5 4 3 7 7 C 1.52995 * 109.47062 * 46.20107 * 6 5 4 8 8 N 1.46500 * 109.47055 * 180.02562 * 7 6 5 9 9 C 1.34774 * 120.00319 * 180.27628 * 8 7 6 10 10 O 1.21589 * 120.00021 * 359.72489 * 9 8 7 11 11 N 1.34778 * 120.00423 * 179.72266 * 9 8 7 12 12 C 1.46494 * 120.00166 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.47088 * 178.28815 * 12 11 9 14 14 C 1.50703 * 115.55016 * 65.14065 * 13 12 11 15 15 H 1.08000 * 119.99742 * 265.40191 * 14 13 12 16 16 C 1.37874 * 120.00116 * 85.40721 * 14 13 12 17 17 N 1.31511 * 120.00258 * 353.55014 * 16 14 13 18 18 Si 1.86805 * 119.99735 * 173.55567 * 16 14 13 19 19 H 1.48501 * 109.47180 * 89.99651 * 18 16 14 20 20 H 1.48504 * 109.46717 * 209.99278 * 18 16 14 21 21 H 1.48496 * 109.47128 * 329.99647 * 18 16 14 22 22 C 1.53003 * 117.49836 * 279.46739 * 13 12 11 23 23 C 1.52996 * 117.49983 * 210.80635 * 13 12 11 24 24 C 1.46957 * 110.87703 * 59.32240 * 5 4 3 25 25 C 1.46959 * 110.99951 * 123.79649 * 2 1 3 26 26 C 1.52995 * 109.48659 * 56.84828 * 25 2 1 27 27 C 1.53003 * 109.48996 * 296.78197 * 25 2 1 28 28 H 1.09001 * 109.47629 * 296.19913 * 1 2 3 29 29 H 1.09000 * 109.47350 * 56.20498 * 1 2 3 30 30 H 1.09011 * 109.46638 * 176.19626 * 1 2 3 31 31 H 1.08996 * 109.48809 * 303.15246 * 3 2 1 32 32 H 1.08998 * 109.48889 * 63.20258 * 3 2 1 33 33 H 1.09003 * 109.48659 * 181.63316 * 4 3 2 34 34 H 1.08997 * 109.48887 * 61.56798 * 4 3 2 35 35 H 1.08997 * 109.46988 * 286.19924 * 6 5 4 36 36 H 1.09002 * 109.47009 * 166.20278 * 6 5 4 37 37 H 1.08997 * 109.47369 * 60.00049 * 7 6 5 38 38 H 1.09002 * 109.47348 * 299.99963 * 7 6 5 39 39 H 0.97001 * 120.00059 * 359.97438 * 8 7 6 40 40 H 0.96998 * 119.99506 * 0.02562 * 11 9 8 41 41 H 1.09005 * 109.46802 * 298.28195 * 12 11 9 42 42 H 1.08994 * 109.47670 * 58.28475 * 12 11 9 43 43 H 0.97000 * 120.00568 * 185.07485 * 17 16 14 44 44 H 1.08996 * 117.49924 * 0.02562 * 22 13 12 45 45 H 1.09005 * 117.49229 * 145.02044 * 22 13 12 46 46 H 1.09002 * 117.50301 * 214.97410 * 23 13 12 47 47 H 1.09001 * 117.50143 * 359.97438 * 23 13 12 48 48 H 1.08992 * 109.48940 * 60.65036 * 24 5 4 49 49 H 1.09005 * 109.48281 * 180.71354 * 24 5 4 50 50 H 1.09007 * 109.46579 * 179.88663 * 26 25 2 51 51 H 1.08993 * 109.47588 * 299.88674 * 26 25 2 52 52 H 1.08994 * 109.46968 * 59.89505 * 26 25 2 53 53 H 1.09001 * 109.47191 * 300.11585 * 27 25 2 54 54 H 1.09005 * 109.46937 * 60.10797 * 27 25 2 55 55 H 1.08996 * 109.47407 * 180.11158 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3721 0.0000 4 6 3.5234 1.3292 -0.0802 5 7 4.0500 0.5661 1.0599 6 6 5.5190 0.5662 1.0600 7 6 6.0289 1.9868 0.8095 8 7 7.4939 1.9868 0.8089 9 6 8.1677 3.1372 0.6117 10 8 7.5597 4.1743 0.4292 11 7 9.5155 3.1383 0.6167 12 6 10.2479 4.3888 0.4029 13 6 11.7514 4.1221 0.4986 14 6 12.3222 3.2274 -0.5713 15 1 12.4285 2.1681 -0.3894 16 6 12.7088 3.7611 -1.7824 17 7 12.4638 5.0246 -2.0524 18 14 13.5805 2.6892 -3.0397 19 1 12.5756 2.0476 -3.9249 20 1 14.4953 3.5277 -3.8555 21 1 14.3636 1.6405 -2.3382 22 6 12.3651 4.0312 1.8972 23 6 12.6381 5.2550 1.0193 24 6 3.5234 -0.8059 1.0598 25 6 1.9956 -0.7632 1.1401 26 6 1.4422 -2.1889 1.0993 27 6 1.5718 -0.0878 2.4460 28 1 -0.3634 0.4537 0.9221 29 1 -0.3634 0.5716 -0.8540 30 1 -0.3633 -1.0255 -0.0682 31 1 1.6012 1.9129 -0.8603 32 1 1.6933 1.8775 0.9172 33 1 3.9177 2.3450 -0.0511 34 1 3.8253 0.8481 -1.0105 35 1 5.8824 -0.0943 0.2728 36 1 5.8824 0.2147 2.0257 37 1 5.6655 2.6474 1.5967 38 1 5.6655 2.3383 -0.1562 39 1 7.9790 1.1596 0.9548 40 1 10.0005 2.3109 0.7619 41 1 10.0112 4.7841 -0.5851 42 1 9.9584 5.1141 1.1633 43 1 12.6687 5.3815 -2.9308 44 1 11.6976 4.1609 2.7491 45 1 13.1819 3.3244 2.0433 46 1 13.6345 5.3529 0.5883 47 1 12.1504 6.1906 1.2932 48 1 3.8254 -1.3113 0.1426 49 1 3.9178 -1.3467 1.9202 50 1 1.8346 -2.7552 1.9440 51 1 0.3542 -2.1581 1.1565 52 1 1.7437 -2.6691 0.1685 53 1 1.9655 0.9283 2.4740 54 1 0.4837 -0.0574 2.5028 55 1 1.9642 -0.6529 3.2914 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000440992843.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:03 Heat of formation + Delta-G solvation = -9.041905 kcal Electronic energy + Delta-G solvation = -29982.886914 eV Core-core repulsion = 26054.969893 eV Total energy + Delta-G solvation = -3927.917021 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.22955 -40.81058 -38.61210 -37.62676 -35.33140 -34.87571 -33.96113 -33.94245 -30.95703 -29.29670 -28.17234 -27.96327 -27.22760 -26.50985 -24.48231 -24.12942 -22.95776 -21.83139 -21.71818 -21.22170 -19.35365 -19.20676 -18.08974 -17.55583 -16.87626 -16.79746 -16.71190 -16.54071 -16.05568 -15.94883 -15.74088 -15.39574 -15.23136 -15.08879 -14.92823 -14.48509 -14.38795 -14.08902 -13.76372 -13.57064 -13.44033 -13.23690 -13.02658 -12.90764 -12.83853 -12.77770 -12.69177 -12.44186 -12.35872 -12.32918 -12.06782 -12.04060 -12.02322 -11.64569 -11.52094 -11.35024 -11.22468 -10.83698 -10.45126 -10.28364 -10.03175 -9.57588 -9.40882 -9.16911 -8.08334 -6.21304 1.42429 1.45174 1.53452 1.76420 2.25277 2.43201 2.86709 2.95166 3.19837 3.40360 3.66117 3.70654 3.78894 3.98078 4.06413 4.12199 4.21775 4.27190 4.33009 4.35157 4.46981 4.56159 4.58367 4.64297 4.66444 4.67786 4.72467 4.76103 4.81382 4.84105 4.86181 4.89967 4.93638 4.99798 5.01633 5.02031 5.05261 5.06056 5.16232 5.29176 5.30498 5.47503 5.50495 5.60644 5.63392 5.72738 5.80220 5.92171 5.95720 6.14979 6.18209 6.22150 6.38389 6.85696 7.25141 7.47878 7.69403 8.99246 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019121 B = 0.001936 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.990458 B =14459.739737 C =14914.626093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.544 5.544 3 C 0.057 3.943 4 C 0.049 3.951 5 N -0.535 5.535 6 C 0.058 3.942 7 C 0.143 3.857 8 N -0.733 5.733 9 C 0.696 3.304 10 O -0.647 6.647 11 N -0.714 5.714 12 C 0.199 3.801 13 C 0.004 3.996 14 C -0.501 4.501 15 H 0.065 0.935 16 C 0.022 3.978 17 N -0.909 5.909 18 Si 0.950 3.050 19 H -0.281 1.281 20 H -0.291 1.291 21 H -0.263 1.263 22 C -0.174 4.174 23 C -0.160 4.160 24 C 0.070 3.930 25 C 0.105 3.895 26 C -0.136 4.136 27 C -0.165 4.165 28 H 0.031 0.969 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.043 0.957 33 H 0.079 0.921 34 H 0.035 0.965 35 H 0.048 0.952 36 H 0.099 0.901 37 H 0.059 0.941 38 H 0.051 0.949 39 H 0.411 0.589 40 H 0.407 0.593 41 H 0.025 0.975 42 H 0.032 0.968 43 H 0.258 0.742 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.064 0.936 47 H 0.070 0.930 48 H 0.036 0.964 49 H 0.092 0.908 50 H 0.072 0.928 51 H 0.066 0.934 52 H 0.058 0.942 53 H 0.055 0.945 54 H 0.054 0.946 55 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.215 -16.002 8.407 28.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.269 5.269 3 C -0.071 4.071 4 C -0.080 4.080 5 N -0.260 5.260 6 C -0.070 4.070 7 C 0.019 3.981 8 N -0.390 5.390 9 C 0.396 3.604 10 O -0.529 6.529 11 N -0.367 5.367 12 C 0.074 3.926 13 C 0.003 3.997 14 C -0.539 4.539 15 H 0.083 0.917 16 C -0.178 4.178 17 N -0.546 5.546 18 Si 0.776 3.224 19 H -0.207 1.207 20 H -0.217 1.217 21 H -0.187 1.187 22 C -0.211 4.211 23 C -0.198 4.198 24 C -0.058 4.058 25 C 0.015 3.985 26 C -0.194 4.194 27 C -0.224 4.224 28 H 0.049 0.951 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.061 0.939 33 H 0.097 0.903 34 H 0.053 0.947 35 H 0.066 0.934 36 H 0.117 0.883 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.247 0.753 40 H 0.243 0.757 41 H 0.043 0.957 42 H 0.050 0.950 43 H 0.067 0.933 44 H 0.107 0.893 45 H 0.105 0.895 46 H 0.082 0.918 47 H 0.088 0.912 48 H 0.054 0.946 49 H 0.110 0.890 50 H 0.091 0.909 51 H 0.085 0.915 52 H 0.077 0.923 53 H 0.074 0.926 54 H 0.073 0.927 55 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -22.669 -14.911 8.114 28.321 hybrid contribution 1.032 -0.431 -1.037 1.525 sum -21.637 -15.342 7.077 27.452 Atomic orbital electron populations 1.22471 0.86607 1.02955 1.00780 1.62413 1.08705 1.13433 1.42334 1.22154 0.93828 0.89894 1.01266 1.22283 0.95067 0.98807 0.91795 1.62186 1.06473 1.14695 1.42659 1.22158 0.87621 0.94350 1.02914 1.21179 0.77955 0.97821 1.01163 1.44784 1.07108 1.08889 1.78233 1.16163 0.82159 0.84092 0.78006 1.90845 1.69006 1.33327 1.59763 1.44890 1.03548 1.12546 1.75753 1.20392 0.91021 0.83694 0.97454 1.19077 0.89001 0.99032 0.92596 1.20646 1.41027 0.93820 0.98424 0.91693 1.25726 0.96039 0.95805 1.00247 1.70106 1.48320 1.14581 1.21610 0.85679 0.78616 0.78896 0.79166 1.20691 1.21672 1.18674 1.23001 1.03439 1.00727 0.93962 1.22437 1.00616 0.92314 1.04420 1.22235 0.93924 0.88357 1.01332 1.21163 0.93567 0.94765 0.89011 1.21856 1.01409 0.93618 1.02552 1.22269 1.00734 1.01655 0.97725 0.95069 0.91301 0.90195 0.89907 0.93858 0.90253 0.94714 0.93363 0.88291 0.92302 0.93040 0.75284 0.75735 0.95683 0.94958 0.93280 0.89322 0.89454 0.91751 0.91164 0.94551 0.88963 0.90904 0.91537 0.92332 0.92604 0.92686 0.91629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 8.81 127.69 1.12 1.36 16 2 N -0.54 -8.44 4.73 -872.09 -4.13 -12.57 16 3 C 0.06 0.96 5.24 86.31 0.45 1.41 16 4 C 0.05 0.93 4.93 86.31 0.43 1.36 16 5 N -0.54 -9.38 4.18 -895.71 -3.74 -13.12 16 6 C 0.06 0.99 5.39 86.30 0.47 1.45 16 7 C 0.14 3.48 4.94 86.38 0.43 3.91 16 8 N -0.73 -19.84 5.56 -478.54 -2.66 -22.50 16 9 C 0.70 26.75 8.57 179.05 1.53 28.28 16 10 O -0.65 -30.81 16.34 -4.00 -0.07 -30.88 16 11 N -0.71 -27.70 5.48 -478.55 -2.62 -30.32 16 12 C 0.20 9.31 5.50 86.38 0.48 9.79 16 13 C 0.00 0.18 1.38 -52.93 -0.07 0.10 16 14 C -0.50 -25.42 8.63 25.60 0.22 -25.20 16 15 H 0.06 3.15 7.82 -2.91 -0.02 3.13 16 16 C 0.02 1.19 5.39 84.65 0.46 1.64 16 17 N -0.91 -51.75 12.91 21.45 0.28 -51.48 16 18 Si 0.95 42.18 29.55 68.60 2.03 44.21 16 19 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 20 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 21 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 22 C -0.17 -6.85 9.96 30.62 0.30 -6.55 16 23 C -0.16 -7.28 9.42 30.62 0.29 -6.99 16 24 C 0.07 1.03 4.29 86.31 0.37 1.40 16 25 C 0.10 1.43 0.68 3.53 0.00 1.43 16 26 C -0.14 -1.42 8.14 71.98 0.59 -0.83 16 27 C -0.17 -2.25 7.65 71.98 0.55 -1.70 16 28 H 0.03 0.37 6.39 -2.39 -0.02 0.35 16 29 H 0.07 0.79 8.13 -2.39 -0.02 0.77 16 30 H 0.08 0.81 6.25 -2.38 -0.01 0.80 16 31 H 0.08 1.31 8.13 -2.39 -0.02 1.29 16 32 H 0.04 0.77 6.34 -2.39 -0.02 0.76 16 33 H 0.08 1.68 5.99 -2.39 -0.01 1.67 16 34 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.05 0.80 8.08 -2.39 -0.02 0.78 16 36 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.05 1.42 6.26 -2.39 -0.01 1.40 16 39 H 0.41 8.31 8.49 -92.71 -0.79 7.53 16 40 H 0.41 13.76 8.38 -92.71 -0.78 12.98 16 41 H 0.02 1.38 8.14 -2.38 -0.02 1.36 16 42 H 0.03 1.50 8.09 -2.39 -0.02 1.48 16 43 H 0.26 14.23 8.32 -92.71 -0.77 13.46 16 44 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 45 H 0.09 3.29 8.14 -2.38 -0.02 3.27 16 46 H 0.06 3.15 8.14 -2.39 -0.02 3.13 16 47 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 48 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 49 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 50 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 51 H 0.07 0.61 6.36 -2.39 -0.02 0.59 16 52 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 53 H 0.05 0.96 5.94 -2.39 -0.01 0.95 16 54 H 0.05 0.69 6.48 -2.38 -0.02 0.68 16 55 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -66.21 420.29 -3.99 -70.20 By element: Atomic # 1 Polarization: 36.26 SS G_CDS: -0.69 Total: 35.57 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: 7.61 Total: 10.88 kcal Atomic # 7 Polarization: -117.11 SS G_CDS: -12.87 Total: -129.98 kcal Atomic # 8 Polarization: -30.81 SS G_CDS: -0.07 Total: -30.88 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -66.21 -3.99 -70.20 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440992843.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.156 kcal (2) G-P(sol) polarization free energy of solvation -66.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds