Wall clock time and date at job start Tue Mar 31 2020 22:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46895 * 111.00258 * 2 1 4 4 C 1.50702 * 109.46770 * 66.04640 * 3 2 1 5 5 H 1.08002 * 120.00299 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99942 * 179.72214 * 4 3 2 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 3 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 3 9 9 H 1.48501 * 109.47188 * 90.00793 * 8 6 4 10 10 H 1.48501 * 109.47085 * 210.00372 * 8 6 4 11 11 H 1.48498 * 109.47634 * 330.00608 * 8 6 4 12 12 C 1.46903 * 111.00134 * 236.04665 * 2 1 3 13 13 C 1.53002 * 109.47459 * 293.95705 * 12 2 1 14 14 H 1.09002 * 109.46753 * 59.99598 * 13 12 2 15 15 O 1.42898 * 109.46750 * 299.99481 * 13 12 2 16 16 C 1.52996 * 109.47113 * 179.97438 * 13 12 2 17 17 N 1.46902 * 109.47030 * 185.00035 * 16 13 12 18 18 C 1.46898 * 111.00197 * 180.02562 * 17 16 13 19 19 H 1.09002 * 113.54445 * 25.32831 * 18 17 16 20 20 C 1.50643 * 114.57652 * 251.04706 * 18 17 16 21 21 H 1.09000 * 114.52927 * 319.77350 * 20 18 17 22 22 C 1.52152 * 126.90975 * 114.38833 * 20 18 17 23 23 C 1.56609 * 101.64500 * 119.68288 * 22 20 18 24 24 O 1.46165 * 105.31358 * 353.14246 * 23 22 20 25 25 C 1.40242 * 103.36966 * 329.61777 * 24 23 22 26 26 H 1.08991 * 110.61205 * 294.85590 * 25 24 23 27 27 C 1.48193 * 134.48743 * 139.14785 * 25 24 23 28 28 C 1.53400 * 118.58243 * 338.68409 * 27 25 24 29 29 C 1.55102 * 103.94322 * 115.61546 * 28 27 25 30 30 C 1.54972 * 102.90040 * 37.09864 * 29 28 27 31 31 C 1.53024 * 118.84802 * 112.54973 * 27 25 24 32 32 H 1.08994 * 109.47470 * 59.99796 * 1 2 3 33 33 H 1.09011 * 109.47216 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.46850 * 299.99524 * 1 2 3 35 35 H 1.09004 * 109.47258 * 306.04964 * 3 2 1 36 36 H 1.08994 * 109.47601 * 186.04556 * 3 2 1 37 37 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 38 38 H 1.09007 * 109.46849 * 53.95180 * 12 2 1 39 39 H 1.09000 * 109.47671 * 173.94991 * 12 2 1 40 40 H 0.96699 * 114.00327 * 300.00228 * 15 13 12 41 41 H 1.09001 * 109.47010 * 304.99564 * 16 13 12 42 42 H 1.08998 * 109.47554 * 64.99925 * 16 13 12 43 43 H 1.00893 * 111.00341 * 56.04301 * 17 16 13 44 44 H 1.09002 * 110.93521 * 237.36844 * 22 20 18 45 45 H 1.09002 * 110.93168 * 1.03534 * 22 20 18 46 46 H 1.09003 * 109.96678 * 234.33912 * 23 22 20 47 47 H 1.08997 * 110.57762 * 112.26503 * 23 22 20 48 48 H 1.08995 * 110.53318 * 234.22942 * 28 27 25 49 49 H 1.09000 * 110.53322 * 357.00230 * 28 27 25 50 50 H 1.09004 * 110.73055 * 278.74697 * 29 28 27 51 51 H 1.09003 * 110.88121 * 155.52618 * 29 28 27 52 52 H 1.09001 * 110.48156 * 203.83595 * 30 29 28 53 53 H 1.09004 * 110.48248 * 81.20477 * 30 29 28 54 54 H 1.08994 * 110.11269 * 340.40996 * 31 27 25 55 55 H 1.08998 * 110.10793 * 102.04684 * 31 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0470 1.2985 5 1 1.0746 1.5111 2.0489 6 6 2.0322 3.3473 1.5312 7 7 2.7172 3.9997 0.6176 8 14 1.5944 4.1822 3.1438 9 1 2.6727 3.9395 4.1355 10 1 1.4465 5.6429 2.9208 11 1 0.3159 3.6279 3.6571 12 6 1.9954 -0.7660 -1.1376 13 6 1.6314 -2.2426 -0.9705 14 1 0.5471 -2.3474 -0.9325 15 8 2.2009 -2.7392 0.2424 16 6 2.1792 -3.0402 -2.1556 17 7 1.7287 -4.4350 -2.0573 18 6 2.2372 -5.2329 -3.1810 19 1 3.1539 -4.8360 -3.6172 20 6 1.1904 -5.6396 -4.1851 21 1 0.2376 -5.9398 -3.7491 22 6 1.0959 -5.1955 -5.6373 23 6 1.2052 -6.5625 -6.3936 24 8 1.5084 -7.5517 -5.3611 25 6 2.2324 -6.8171 -4.4109 26 1 3.1800 -6.4777 -4.8289 27 6 2.2519 -6.7698 -2.9298 28 6 1.0254 -7.2803 -2.1630 29 6 1.5587 -8.5084 -1.3800 30 6 2.9870 -8.0657 -0.9731 31 6 3.4977 -7.2646 -2.1917 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0278 -0.0005 34 1 -0.3633 0.5138 0.8900 35 1 1.5610 1.9273 -0.8309 36 1 3.0796 1.3444 -0.1082 37 1 2.9950 4.9147 0.7811 38 1 1.5610 -0.3872 -2.0628 39 1 3.0797 -0.6611 -1.1757 40 1 3.1652 -2.6772 0.2785 41 1 1.8142 -2.6053 -3.0861 42 1 3.2687 -3.0085 -2.1425 43 1 0.7226 -4.4870 -2.0026 44 1 0.1354 -4.7208 -5.8377 45 1 1.9193 -4.5294 -5.8952 46 1 2.0125 -6.5199 -7.1247 47 1 0.2627 -6.8053 -6.8842 48 1 0.6598 -6.5178 -1.4753 49 1 0.2391 -7.5805 -2.8556 50 1 1.5958 -9.3887 -2.0217 51 1 0.9485 -8.7015 -0.4976 52 1 3.6199 -8.9353 -0.7959 53 1 2.9519 -7.4315 -0.0873 54 1 4.0880 -7.9090 -2.8430 55 1 4.0971 -6.4174 -1.8585 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565652227.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:38 Heat of formation + Delta-G solvation = -33.575107 kcal Electronic energy + Delta-G solvation = -30719.538797 eV Core-core repulsion = 26758.265186 eV Total energy + Delta-G solvation = -3961.273611 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.19464 -39.49079 -38.66063 -37.23269 -36.08561 -34.60371 -34.03137 -31.84939 -30.80324 -29.79967 -28.99099 -27.42435 -26.91941 -25.49863 -24.32490 -23.52571 -22.65141 -22.15586 -21.69236 -20.50145 -19.73369 -18.56185 -17.68619 -17.29897 -17.08200 -16.93338 -16.62219 -16.46719 -16.19441 -15.90309 -15.60916 -15.41415 -15.38679 -15.03589 -14.82455 -14.33095 -14.03018 -13.85574 -13.81938 -13.45302 -13.39038 -13.15637 -12.91038 -12.81298 -12.60327 -12.58145 -12.52187 -12.38769 -12.35855 -12.16685 -11.98807 -11.92079 -11.79780 -11.61885 -11.56679 -11.45637 -11.36802 -11.25891 -10.83518 -10.62396 -10.61637 -9.97159 -9.17317 -8.94442 -8.20907 -6.30509 1.41114 1.42655 1.53702 2.06744 2.40297 2.90376 3.11596 3.23795 3.29215 3.46605 3.64816 3.78465 3.83419 3.89790 3.98300 4.02805 4.13979 4.16785 4.24432 4.31626 4.33986 4.38640 4.47403 4.51576 4.53440 4.59458 4.66591 4.69587 4.70896 4.73289 4.79971 4.82345 4.85473 4.93325 4.96002 5.03780 5.07056 5.10921 5.12140 5.16342 5.19353 5.25147 5.29168 5.32504 5.36441 5.45449 5.55526 5.65073 5.88434 6.04735 6.11926 6.32983 6.42132 6.65305 6.85820 7.08477 7.39239 8.90051 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019556 B = 0.002113 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.416166 B =13248.837264 C =14067.896271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.539 5.539 3 C 0.208 3.792 4 C -0.522 4.522 5 H 0.060 0.940 6 C 0.001 3.999 7 N -0.935 5.935 8 Si 0.969 3.031 9 H -0.273 1.273 10 H -0.281 1.281 11 H -0.265 1.265 12 C 0.024 3.976 13 C 0.131 3.869 14 H 0.089 0.911 15 O -0.552 6.552 16 C 0.041 3.959 17 N -0.661 5.661 18 C 0.099 3.901 19 H 0.112 0.888 20 C -0.204 4.204 21 H 0.110 0.890 22 C -0.138 4.138 23 C 0.044 3.956 24 O -0.380 6.380 25 C 0.034 3.966 26 H 0.088 0.912 27 C -0.034 4.034 28 C -0.096 4.096 29 C -0.123 4.123 30 C -0.119 4.119 31 C -0.107 4.107 32 H 0.009 0.991 33 H 0.077 0.923 34 H 0.053 0.947 35 H -0.040 1.040 36 H 0.004 0.996 37 H 0.264 0.736 38 H 0.030 0.970 39 H 0.068 0.932 40 H 0.378 0.622 41 H 0.043 0.957 42 H 0.081 0.919 43 H 0.345 0.655 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.098 0.902 48 H 0.081 0.919 49 H 0.061 0.939 50 H 0.061 0.939 51 H 0.069 0.931 52 H 0.067 0.933 53 H 0.063 0.937 54 H 0.063 0.937 55 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.471 -25.096 -13.156 28.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.263 5.263 3 C 0.081 3.919 4 C -0.561 4.561 5 H 0.079 0.921 6 C -0.197 4.197 7 N -0.576 5.576 8 Si 0.793 3.207 9 H -0.198 1.198 10 H -0.207 1.207 11 H -0.190 1.190 12 C -0.106 4.106 13 C 0.071 3.929 14 H 0.107 0.893 15 O -0.358 6.358 16 C -0.089 4.089 17 N -0.290 5.290 18 C -0.012 4.012 19 H 0.130 0.870 20 C -0.225 4.225 21 H 0.128 0.872 22 C -0.176 4.176 23 C -0.032 4.032 24 O -0.299 6.299 25 C -0.025 4.025 26 H 0.106 0.894 27 C -0.035 4.035 28 C -0.133 4.133 29 C -0.160 4.160 30 C -0.157 4.157 31 C -0.145 4.145 32 H 0.027 0.973 33 H 0.095 0.905 34 H 0.071 0.929 35 H -0.022 1.022 36 H 0.022 0.978 37 H 0.073 0.927 38 H 0.048 0.952 39 H 0.086 0.914 40 H 0.225 0.775 41 H 0.062 0.938 42 H 0.100 0.900 43 H 0.165 0.835 44 H 0.098 0.902 45 H 0.099 0.901 46 H 0.092 0.908 47 H 0.117 0.883 48 H 0.099 0.901 49 H 0.080 0.920 50 H 0.080 0.920 51 H 0.088 0.912 52 H 0.086 0.914 53 H 0.082 0.918 54 H 0.082 0.918 55 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.414 -25.660 -12.194 28.445 hybrid contribution -0.235 1.894 -1.238 2.274 sum -1.649 -23.766 -13.431 27.349 Atomic orbital electron populations 1.22203 0.87942 1.00795 0.99675 1.61920 1.07877 1.14781 1.41677 1.19396 0.93646 0.83983 0.94837 1.21473 1.34672 0.97564 1.02363 0.92149 1.25907 0.95039 0.98048 1.00703 1.70080 1.39389 1.11997 1.36090 0.85392 0.78963 0.77245 0.79083 1.19827 1.20687 1.18975 1.22842 1.00284 0.95551 0.91883 1.21708 0.98027 0.88687 0.84511 0.89309 1.86554 1.25901 1.84856 1.38449 1.22528 1.01197 0.88395 0.96738 1.60087 1.16538 1.09333 1.43092 1.22942 0.97052 0.92658 0.88555 0.87037 1.25190 0.98907 1.01871 0.96502 0.87181 1.22557 1.03547 0.97059 0.94412 1.24474 1.01954 0.86236 0.90504 1.88520 1.73331 1.34286 1.33791 1.23498 0.95506 0.91826 0.91675 0.89424 1.21760 0.97275 0.94619 0.89820 1.22061 0.95368 0.97825 0.98091 1.22510 0.96527 0.97363 0.99631 1.22335 0.96130 0.99405 0.97829 1.21976 0.96179 0.99721 0.96579 0.97292 0.90454 0.92852 1.02221 0.97765 0.92687 0.95175 0.91391 0.77480 0.93836 0.90037 0.83516 0.90200 0.90105 0.90784 0.88336 0.90097 0.92015 0.92048 0.91230 0.91424 0.91822 0.91795 0.91091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.64 9.16 127.69 1.17 2.81 16 2 N -0.54 -23.16 4.62 -927.06 -4.28 -27.45 16 3 C 0.21 11.13 4.72 85.56 0.40 11.53 16 4 C -0.52 -30.02 8.51 25.60 0.22 -29.81 16 5 H 0.06 3.44 7.10 -2.91 -0.02 3.42 16 6 C 0.00 0.05 5.46 84.66 0.46 0.51 16 7 N -0.93 -56.45 13.29 21.45 0.28 -56.17 16 8 Si 0.97 44.69 29.54 68.60 2.03 46.72 16 9 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 12 C 0.02 0.78 4.62 86.30 0.40 1.18 16 13 C 0.13 3.36 3.02 30.59 0.09 3.45 16 14 H 0.09 2.33 6.47 -2.39 -0.02 2.31 16 15 O -0.55 -16.18 13.15 -148.98 -1.96 -18.14 16 16 C 0.04 0.78 5.19 86.30 0.45 1.23 16 17 N -0.66 -11.39 5.85 -529.59 -3.10 -14.48 16 18 C 0.10 1.48 3.37 37.83 0.13 1.60 16 19 H 0.11 1.58 7.46 -2.39 -0.02 1.57 16 20 C -0.20 -2.97 3.81 -18.29 -0.07 -3.04 16 21 H 0.11 1.76 5.99 -2.39 -0.01 1.75 16 22 C -0.14 -1.70 6.91 31.57 0.22 -1.48 16 23 C 0.04 0.57 7.79 73.24 0.57 1.14 16 24 O -0.38 -7.34 11.47 -142.82 -1.64 -8.98 16 25 C 0.03 0.55 4.31 23.92 0.10 0.66 16 26 H 0.09 1.32 7.56 -2.39 -0.02 1.30 16 27 C -0.03 -0.53 1.28 -61.17 -0.08 -0.61 16 28 C -0.10 -1.57 4.94 31.45 0.16 -1.42 16 29 C -0.12 -1.94 6.91 31.99 0.22 -1.72 16 30 C -0.12 -1.88 6.85 31.78 0.22 -1.67 16 31 C -0.11 -1.68 6.35 31.12 0.20 -1.49 16 32 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.08 2.51 6.30 -2.38 -0.01 2.50 16 34 H 0.05 2.27 6.86 -2.39 -0.02 2.25 16 35 H -0.04 -2.31 8.12 -2.38 -0.02 -2.33 16 36 H 0.00 0.24 7.93 -2.39 -0.02 0.22 16 37 H 0.26 14.98 8.31 -92.70 -0.77 14.21 16 38 H 0.03 0.98 8.12 -2.38 -0.02 0.96 16 39 H 0.07 2.25 7.93 -2.39 -0.02 2.23 16 40 H 0.38 9.35 9.05 -74.06 -0.67 8.68 16 41 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.35 5.93 7.65 -89.70 -0.69 5.25 16 44 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.08 1.40 6.64 -2.39 -0.02 1.38 16 49 H 0.06 1.07 7.08 -2.39 -0.02 1.05 16 50 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 51 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 52 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 53 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 54 H 0.06 0.96 8.07 -2.39 -0.02 0.94 16 55 H 0.07 1.15 7.86 -2.39 -0.02 1.14 16 Total: -1.00 -66.86 416.51 -4.29 -71.15 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: -0.48 Total: 24.45 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: 4.86 Total: -17.10 kcal Atomic # 7 Polarization: -91.00 SS G_CDS: -7.09 Total: -98.10 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -3.60 Total: -27.12 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -66.86 -4.29 -71.15 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565652227.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.576 kcal (2) G-P(sol) polarization free energy of solvation -66.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds