Wall clock time and date at job start Tue Mar 31 2020 22:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46897 * 111.00228 * 2 1 4 4 C 1.50699 * 109.47002 * 293.95320 * 3 2 1 5 5 H 1.08006 * 119.99989 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00261 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99756 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00152 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.46860 * 60.00223 * 8 6 4 10 10 H 1.48499 * 109.47160 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47324 * 300.00198 * 8 6 4 12 12 C 1.46902 * 110.99844 * 123.95315 * 2 1 3 13 13 C 1.53008 * 109.46976 * 164.37666 * 12 2 1 14 14 H 1.09000 * 109.47164 * 58.50907 * 13 12 2 15 15 O 1.42898 * 109.46860 * 298.50580 * 13 12 2 16 16 C 1.52998 * 109.47003 * 178.50678 * 13 12 2 17 17 N 1.46897 * 109.46999 * 184.99975 * 16 13 12 18 18 C 1.46909 * 110.99812 * 179.97438 * 17 16 13 19 19 H 1.08997 * 113.55538 * 338.44548 * 18 17 16 20 20 C 1.50612 * 114.58886 * 204.12281 * 18 17 16 21 21 H 1.08994 * 114.39677 * 174.54729 * 20 18 17 22 22 C 1.52109 * 127.05857 * 21.08772 * 20 18 17 23 23 C 1.55959 * 101.93803 * 240.71382 * 22 20 18 24 24 O 1.46144 * 105.30665 * 6.37055 * 23 22 20 25 25 C 1.40193 * 104.70088 * 29.67670 * 24 23 22 26 26 H 1.09003 * 108.80054 * 66.61816 * 25 24 23 27 27 C 1.48347 * 136.75280 * 222.89871 * 25 24 23 28 28 C 1.53373 * 118.59779 * 246.99721 * 27 25 24 29 29 C 1.55108 * 103.93316 * 115.30590 * 28 27 25 30 30 C 1.54967 * 102.87594 * 37.14893 * 29 28 27 31 31 C 1.53012 * 118.71609 * 20.72977 * 27 25 24 32 32 H 1.08999 * 109.47364 * 292.63164 * 1 2 3 33 33 H 1.09002 * 109.47235 * 52.62474 * 1 2 3 34 34 H 1.09001 * 109.47599 * 172.62728 * 1 2 3 35 35 H 1.08995 * 109.47198 * 53.95082 * 3 2 1 36 36 H 1.09006 * 109.47406 * 173.95513 * 3 2 1 37 37 H 0.97001 * 119.99435 * 179.97438 * 7 6 4 38 38 H 1.08997 * 109.47404 * 44.38044 * 12 2 1 39 39 H 1.09004 * 109.47315 * 284.37304 * 12 2 1 40 40 H 0.96694 * 114.00090 * 299.99548 * 15 13 12 41 41 H 1.09001 * 109.47163 * 304.99989 * 16 13 12 42 42 H 1.09004 * 109.47234 * 64.99581 * 16 13 12 43 43 H 1.00894 * 111.00231 * 56.05228 * 17 16 13 44 44 H 1.09001 * 110.94085 * 358.87630 * 22 20 18 45 45 H 1.08998 * 110.93416 * 122.52003 * 22 20 18 46 46 H 1.09003 * 110.27559 * 125.33075 * 23 22 20 47 47 H 1.08995 * 110.27908 * 247.31372 * 23 22 20 48 48 H 1.09006 * 110.53175 * 233.91191 * 28 27 25 49 49 H 1.08998 * 110.53838 * 356.69112 * 28 27 25 50 50 H 1.09001 * 110.73140 * 278.80515 * 29 28 27 51 51 H 1.09000 * 110.73213 * 155.49652 * 29 28 27 52 52 H 1.09008 * 110.47637 * 203.86203 * 30 29 28 53 53 H 1.09003 * 110.47701 * 81.24665 * 30 29 28 54 54 H 1.09000 * 110.11248 * 340.66363 * 31 27 25 55 55 H 1.09002 * 110.10925 * 102.30671 * 31 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0739 1.5114 -2.0485 6 6 2.0268 3.3494 -1.5286 7 7 2.7120 4.0018 -0.6150 8 14 1.5830 4.1867 -3.1384 9 1 0.1059 4.2229 -3.2867 10 1 2.1151 5.5731 -3.1384 11 1 2.1757 3.4295 -4.2700 12 6 1.9953 -0.7660 1.1376 13 6 3.4751 -1.0761 0.9026 14 1 4.0264 -0.1441 0.7779 15 8 3.6135 -1.8727 -0.2756 16 6 4.0328 -1.8416 2.1042 17 7 5.4790 -2.0347 1.9334 18 6 6.0503 -2.7675 3.0714 19 1 5.4413 -2.7142 3.9738 20 6 7.5213 -2.5325 3.2933 21 1 7.9218 -3.0023 4.1915 22 6 8.3451 -1.3515 2.8030 23 6 9.4027 -2.0508 1.8948 24 8 8.9943 -3.4528 1.8362 25 6 7.6001 -3.4235 1.9802 26 1 7.1665 -2.9406 1.1045 27 6 6.5746 -4.1926 2.7269 28 6 5.5746 -5.0442 1.9349 29 6 5.9013 -6.4987 2.3631 30 6 6.2466 -6.3469 3.8662 31 6 7.0098 -5.0059 3.9477 32 1 -0.3634 0.3954 0.9485 33 1 -0.3634 0.6238 -0.8167 34 1 -0.3634 -1.0191 -0.1319 35 1 1.5611 1.9273 0.8308 36 1 3.0798 1.3444 0.1082 37 1 2.9865 4.9179 -0.7771 38 1 1.4399 -1.6986 1.2359 39 1 1.8874 -0.1807 2.0509 40 1 3.1476 -2.7190 -0.2351 41 1 3.8473 -1.2727 3.0153 42 1 3.5425 -2.8125 2.1760 43 1 5.9485 -1.1517 1.8001 44 1 7.7308 -0.6612 2.2250 45 1 8.8249 -0.8386 3.6365 46 1 9.3927 -1.6123 0.8969 47 1 10.3959 -1.9633 2.3352 48 1 4.5515 -4.7857 2.2084 49 1 5.7287 -4.9173 0.8634 50 1 6.7573 -6.8815 1.8074 51 1 5.0333 -7.1444 2.2299 52 1 6.8826 -7.1684 4.1962 53 1 5.3362 -6.3044 4.4642 54 1 8.0847 -5.1840 3.9156 55 1 6.7439 -4.4784 4.8637 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565652229.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:47 Heat of formation + Delta-G solvation = -26.373886 kcal Electronic energy + Delta-G solvation = -31284.193022 eV Core-core repulsion = 27323.231679 eV Total energy + Delta-G solvation = -3960.961343 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.21733 -39.45616 -38.58657 -37.27158 -36.21907 -34.59772 -33.89623 -31.88655 -30.71866 -29.69014 -29.26704 -27.22805 -26.72776 -25.38822 -24.58064 -23.93651 -22.85717 -21.96339 -21.59675 -20.38999 -19.41470 -18.60765 -17.91811 -17.32834 -16.99271 -16.86563 -16.71453 -16.46851 -16.21478 -15.99754 -15.62536 -15.48220 -15.13175 -15.03377 -14.69113 -14.32321 -14.14679 -14.00529 -13.94444 -13.56482 -13.21741 -13.11612 -12.93757 -12.80137 -12.60579 -12.58971 -12.53772 -12.35056 -12.29906 -12.15557 -11.98168 -11.86540 -11.74311 -11.60935 -11.49051 -11.38363 -11.33743 -11.27716 -10.74043 -10.63400 -10.59646 -9.97972 -9.22956 -8.93585 -8.20644 -6.29443 1.39573 1.43275 1.50753 2.13719 2.40060 2.75178 3.11754 3.20368 3.28331 3.47848 3.69365 3.77104 3.85040 3.91358 3.96742 4.03346 4.17633 4.23354 4.30781 4.34110 4.39121 4.41131 4.46388 4.53429 4.57201 4.59440 4.64936 4.66661 4.72676 4.76535 4.78728 4.82164 4.88844 4.95290 4.98618 5.05949 5.08611 5.11548 5.13320 5.20750 5.24151 5.27116 5.30625 5.31222 5.38316 5.46890 5.53790 5.64849 6.00664 6.07318 6.08401 6.24725 6.35790 6.66472 6.86117 7.15376 7.39650 8.90210 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014685 B = 0.002640 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.187851 B =10602.022710 C =11763.098931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.542 5.542 3 C 0.210 3.790 4 C -0.523 4.523 5 H 0.060 0.940 6 C 0.001 3.999 7 N -0.934 5.934 8 Si 0.966 3.034 9 H -0.266 1.266 10 H -0.282 1.282 11 H -0.271 1.271 12 C 0.027 3.973 13 C 0.127 3.873 14 H 0.058 0.942 15 O -0.552 6.552 16 C 0.045 3.955 17 N -0.661 5.661 18 C 0.090 3.910 19 H 0.082 0.918 20 C -0.192 4.192 21 H 0.122 0.878 22 C -0.139 4.139 23 C 0.050 3.950 24 O -0.391 6.391 25 C 0.037 3.963 26 H 0.090 0.910 27 C -0.031 4.031 28 C -0.099 4.099 29 C -0.127 4.127 30 C -0.120 4.120 31 C -0.100 4.100 32 H 0.011 0.989 33 H 0.053 0.947 34 H 0.081 0.919 35 H -0.042 1.042 36 H 0.005 0.995 37 H 0.264 0.736 38 H 0.097 0.903 39 H 0.026 0.974 40 H 0.378 0.622 41 H 0.043 0.957 42 H 0.097 0.903 43 H 0.341 0.659 44 H 0.068 0.932 45 H 0.089 0.911 46 H 0.061 0.939 47 H 0.104 0.896 48 H 0.076 0.924 49 H 0.054 0.946 50 H 0.056 0.944 51 H 0.074 0.926 52 H 0.071 0.929 53 H 0.075 0.925 54 H 0.064 0.936 55 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.073 -19.659 12.919 24.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.266 5.266 3 C 0.084 3.916 4 C -0.561 4.561 5 H 0.078 0.922 6 C -0.197 4.197 7 N -0.575 5.575 8 Si 0.791 3.209 9 H -0.191 1.191 10 H -0.207 1.207 11 H -0.196 1.196 12 C -0.102 4.102 13 C 0.067 3.933 14 H 0.076 0.924 15 O -0.357 6.357 16 C -0.085 4.085 17 N -0.293 5.293 18 C -0.020 4.020 19 H 0.100 0.900 20 C -0.211 4.211 21 H 0.140 0.860 22 C -0.177 4.177 23 C -0.026 4.026 24 O -0.311 6.311 25 C -0.021 4.021 26 H 0.107 0.893 27 C -0.032 4.032 28 C -0.137 4.137 29 C -0.165 4.165 30 C -0.157 4.157 31 C -0.138 4.138 32 H 0.029 0.971 33 H 0.072 0.928 34 H 0.100 0.900 35 H -0.025 1.025 36 H 0.024 0.976 37 H 0.072 0.928 38 H 0.115 0.885 39 H 0.044 0.956 40 H 0.225 0.775 41 H 0.061 0.939 42 H 0.115 0.885 43 H 0.162 0.838 44 H 0.086 0.914 45 H 0.108 0.892 46 H 0.079 0.921 47 H 0.122 0.878 48 H 0.094 0.906 49 H 0.073 0.927 50 H 0.075 0.925 51 H 0.093 0.907 52 H 0.090 0.910 53 H 0.094 0.906 54 H 0.083 0.917 55 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 8.731 -19.918 11.902 24.791 hybrid contribution -0.592 1.949 0.725 2.162 sum 8.139 -17.969 12.627 23.422 Atomic orbital electron populations 1.22233 0.87560 1.01655 0.99453 1.61938 1.07816 1.15090 1.41767 1.19361 0.93793 0.83918 0.94538 1.21454 1.34697 0.97411 1.02538 0.92207 1.25887 0.95096 0.98089 1.00594 1.70070 1.39426 1.11858 1.36143 0.85482 0.78894 0.77185 0.79356 1.19093 1.20743 1.19616 1.22796 0.96894 0.98855 0.91678 1.21641 0.93478 0.93093 0.85124 0.92352 1.86649 1.76082 1.34088 1.38879 1.22622 0.88622 1.01017 0.96237 1.60281 1.03256 1.25556 1.40211 1.22257 0.92859 0.94842 0.92058 0.90030 1.24638 0.96307 0.98995 1.01140 0.86016 1.22357 0.97694 0.97497 1.00151 1.24263 0.99255 0.79626 0.99443 1.88307 1.21624 1.26579 1.94577 1.23952 0.82553 0.99697 0.95863 0.89288 1.21896 0.92275 0.93743 0.95293 1.22081 0.98412 0.94028 0.99130 1.22570 1.01149 0.96542 0.96191 1.22406 1.00351 0.96553 0.96400 1.21924 1.00260 0.95663 0.95922 0.97066 0.92785 0.90003 1.02484 0.97649 0.92754 0.88454 0.95583 0.77495 0.93878 0.88526 0.83805 0.91359 0.89210 0.92064 0.87833 0.90588 0.92720 0.92540 0.90699 0.91046 0.90613 0.91698 0.90121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.47 9.38 127.69 1.20 2.67 16 2 N -0.54 -23.13 4.60 -927.05 -4.27 -27.40 16 3 C 0.21 11.30 4.57 85.56 0.39 11.69 16 4 C -0.52 -30.29 8.41 25.60 0.22 -30.07 16 5 H 0.06 3.42 7.15 -2.91 -0.02 3.40 16 6 C 0.00 0.07 5.46 84.65 0.46 0.53 16 7 N -0.93 -56.83 13.29 21.45 0.28 -56.55 16 8 Si 0.97 45.14 29.54 68.60 2.03 47.17 16 9 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 11 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 12 C 0.03 0.87 4.63 86.31 0.40 1.27 16 13 C 0.13 3.95 3.16 30.60 0.10 4.05 16 14 H 0.06 2.31 6.54 -2.39 -0.02 2.30 16 15 O -0.55 -18.18 13.18 -148.98 -1.96 -20.14 16 16 C 0.04 0.99 5.17 86.30 0.45 1.43 16 17 N -0.66 -14.67 4.56 -529.57 -2.41 -17.08 16 18 C 0.09 1.66 3.78 37.83 0.14 1.80 16 19 H 0.08 1.35 7.88 -2.39 -0.02 1.33 16 20 C -0.19 -3.56 4.23 -18.51 -0.08 -3.64 16 21 H 0.12 2.07 6.21 -2.39 -0.01 2.05 16 22 C -0.14 -2.56 6.74 31.32 0.21 -2.35 16 23 C 0.05 0.99 7.81 73.01 0.57 1.56 16 24 O -0.39 -9.99 11.40 -142.42 -1.62 -11.62 16 25 C 0.04 0.86 4.36 23.99 0.10 0.96 16 26 H 0.09 2.44 6.48 -2.39 -0.02 2.42 16 27 C -0.03 -0.57 1.29 -61.35 -0.08 -0.65 16 28 C -0.10 -1.79 6.03 31.44 0.19 -1.60 16 29 C -0.13 -1.94 6.92 31.99 0.22 -1.72 16 30 C -0.12 -1.55 6.85 31.78 0.22 -1.33 16 31 C -0.10 -1.50 4.78 31.11 0.15 -1.35 16 32 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.05 2.26 6.69 -2.39 -0.02 2.24 16 34 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 35 H -0.04 -2.47 8.12 -2.39 -0.02 -2.49 16 36 H 0.01 0.32 6.36 -2.38 -0.02 0.30 16 37 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 38 H 0.10 2.47 8.00 -2.39 -0.02 2.45 16 39 H 0.03 0.87 8.06 -2.38 -0.02 0.85 16 40 H 0.38 9.18 9.04 -74.06 -0.67 8.51 16 41 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.10 1.75 7.45 -2.38 -0.02 1.73 16 43 H 0.34 8.41 6.85 -89.70 -0.61 7.79 16 44 H 0.07 1.37 6.52 -2.39 -0.02 1.36 16 45 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 48 H 0.08 1.27 7.37 -2.38 -0.02 1.25 16 49 H 0.05 1.20 8.03 -2.39 -0.02 1.18 16 50 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 51 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 52 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 53 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 54 H 0.06 1.11 8.04 -2.39 -0.02 1.09 16 55 H 0.08 1.01 7.38 -2.39 -0.02 0.99 16 Total: -1.00 -69.25 413.32 -3.51 -72.76 By element: Atomic # 1 Polarization: 30.01 SS G_CDS: -0.41 Total: 29.60 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: 4.86 Total: -16.74 kcal Atomic # 7 Polarization: -94.63 SS G_CDS: -6.40 Total: -101.03 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -3.59 Total: -31.76 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -69.25 -3.51 -72.76 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565652229.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.385 kcal (2) G-P(sol) polarization free energy of solvation -69.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds