Wall clock time and date at job start Tue Mar 31 2020 22:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46900 * 111.00131 * 2 1 4 4 C 1.50701 * 109.46974 * 66.04630 * 3 2 1 5 5 H 1.07992 * 120.00244 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99822 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99715 * 180.02562 * 6 4 3 8 8 Si 1.86800 * 120.00045 * 359.97438 * 6 4 3 9 9 H 1.48496 * 109.47053 * 90.00482 * 8 6 4 10 10 H 1.48507 * 109.46858 * 210.00598 * 8 6 4 11 11 H 1.48504 * 109.47197 * 330.00306 * 8 6 4 12 12 C 1.46898 * 110.99700 * 236.05103 * 2 1 3 13 13 C 1.53001 * 109.46893 * 293.95259 * 12 2 1 14 14 H 1.08999 * 109.47164 * 60.00204 * 13 12 2 15 15 O 1.42903 * 109.47171 * 299.99938 * 13 12 2 16 16 C 1.53003 * 109.47376 * 180.02562 * 13 12 2 17 17 N 1.46900 * 109.47407 * 184.99739 * 16 13 12 18 18 C 1.46902 * 110.99888 * 179.97438 * 17 16 13 19 19 H 1.08992 * 112.81606 * 25.33731 * 18 17 16 20 20 C 1.53829 * 113.57172 * 254.26542 * 18 17 16 21 21 H 1.09003 * 116.29140 * 150.47557 * 20 18 17 22 22 C 1.54429 * 112.96429 * 13.86968 * 20 18 17 23 23 C 1.54448 * 104.16084 * 266.46158 * 22 20 18 24 24 O 1.44362 * 104.81004 * 24.31566 * 23 22 20 25 25 C 1.45811 * 105.62915 * 319.43415 * 24 23 22 26 26 H 1.09001 * 115.36514 * 271.21907 * 25 24 23 27 27 C 1.52956 * 113.56787 * 156.40435 * 18 17 16 28 28 C 1.53632 * 115.03114 * 333.42990 * 27 18 17 29 29 C 1.55045 * 103.99809 * 207.03106 * 28 27 18 30 30 C 1.54954 * 102.84361 * 37.38052 * 29 28 27 31 31 C 1.53222 * 115.31489 * 207.67234 * 27 18 17 32 32 H 1.09000 * 109.47293 * 183.95320 * 1 2 3 33 33 H 1.08996 * 109.47257 * 303.95559 * 1 2 3 34 34 H 1.09003 * 109.47219 * 63.94996 * 1 2 3 35 35 H 1.09001 * 109.47261 * 186.04977 * 3 2 1 36 36 H 1.09010 * 109.46835 * 306.04811 * 3 2 1 37 37 H 0.97001 * 119.99802 * 179.97438 * 7 6 4 38 38 H 1.08999 * 109.47049 * 173.95393 * 12 2 1 39 39 H 1.08997 * 109.47646 * 53.95442 * 12 2 1 40 40 H 0.96700 * 114.00311 * 300.00378 * 15 13 12 41 41 H 1.09005 * 109.46682 * 304.99749 * 16 13 12 42 42 H 1.08999 * 109.47221 * 64.99915 * 16 13 12 43 43 H 1.00901 * 110.99392 * 56.04464 * 17 16 13 44 44 H 1.08996 * 110.49776 * 25.13005 * 22 20 18 45 45 H 1.09005 * 110.49659 * 147.65930 * 22 20 18 46 46 H 1.08995 * 110.37193 * 143.15002 * 23 22 20 47 47 H 1.08996 * 110.36719 * 265.37573 * 23 22 20 48 48 H 1.09003 * 110.51948 * 325.65574 * 28 27 18 49 49 H 1.08999 * 110.52371 * 88.39733 * 28 27 18 50 50 H 1.08994 * 110.73906 * 279.03708 * 29 28 27 51 51 H 1.09010 * 110.73352 * 155.71457 * 29 28 27 52 52 H 1.08997 * 110.47660 * 203.70875 * 30 29 28 53 53 H 1.08993 * 110.48415 * 81.07584 * 30 29 28 54 54 H 1.09004 * 110.09006 * 248.64468 * 31 27 18 55 55 H 1.09007 * 110.08952 * 10.22047 * 31 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2985 5 1 1.0747 1.5113 2.0488 6 6 2.0269 3.3495 1.5285 7 7 1.7144 3.9389 2.6619 8 14 3.0001 4.2761 0.2309 9 1 2.0635 4.9798 -0.6816 10 1 3.8865 5.2678 0.8915 11 1 3.8240 3.3174 -0.5484 12 6 1.9954 -0.7659 -1.1377 13 6 1.6314 -2.2425 -0.9705 14 1 0.5471 -2.3474 -0.9324 15 8 2.2009 -2.7391 0.2425 16 6 2.1801 -3.0404 -2.1550 17 7 1.7297 -4.4352 -2.0567 18 6 2.2382 -5.2331 -3.1805 19 1 3.1546 -4.8258 -3.6075 20 6 1.1661 -5.5690 -4.2312 21 1 1.5165 -5.6930 -5.2559 22 6 -0.1191 -4.7280 -4.0709 23 6 -1.0380 -5.6057 -3.1931 24 8 -0.1384 -6.4684 -2.4647 25 6 0.8886 -6.8628 -3.4217 26 1 0.6674 -7.7592 -4.0011 27 6 2.3157 -6.7311 -2.8813 28 6 2.4871 -7.0896 -1.3973 29 6 3.2135 -8.4591 -1.4237 30 6 4.1874 -8.3094 -2.6196 31 6 3.3854 -7.5008 -3.6630 32 1 -0.3634 -1.0252 0.0708 33 1 -0.3633 0.5740 0.8524 34 1 -0.3634 0.4513 -0.9233 35 1 3.0798 1.3444 -0.1083 36 1 1.5611 1.9274 -0.8310 37 1 1.9890 4.8550 2.8239 38 1 3.0797 -0.6610 -1.1757 39 1 1.5611 -0.3871 -2.0628 40 1 3.1652 -2.6771 0.2785 41 1 1.8158 -2.6057 -3.0859 42 1 3.2696 -3.0087 -2.1411 43 1 0.7235 -4.4872 -2.0027 44 1 0.1014 -3.7858 -3.5692 45 1 -0.5783 -4.5437 -5.0422 46 1 -1.6099 -4.9849 -2.5034 47 1 -1.7092 -6.1952 -3.8176 48 1 3.0988 -6.3423 -0.8918 49 1 1.5155 -7.1815 -0.9117 50 1 2.5052 -9.2683 -1.6016 51 1 3.7630 -8.6224 -0.4966 52 1 4.4545 -9.2879 -3.0186 53 1 5.0806 -7.7626 -2.3180 54 1 2.9139 -8.1755 -4.3777 55 1 4.0431 -6.8042 -4.1828 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565652230.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:51 Heat of formation + Delta-G solvation = -81.008259 kcal Electronic energy + Delta-G solvation = -31297.371280 eV Core-core repulsion = 27334.040813 eV Total energy + Delta-G solvation = -3963.330467 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.53577 -39.47779 -38.21292 -37.29241 -35.90429 -34.59450 -33.66470 -31.92071 -31.04571 -29.58310 -29.27384 -27.41830 -27.17454 -25.44689 -24.17425 -23.64078 -22.60251 -21.79378 -21.53392 -20.83535 -19.37802 -19.02842 -17.90548 -17.19678 -17.03920 -16.85004 -16.70158 -16.36758 -16.12872 -15.98755 -15.83214 -15.39559 -15.24177 -14.88750 -14.57843 -14.40141 -14.11602 -14.02964 -13.97674 -13.57520 -13.42365 -13.28747 -13.08688 -12.80562 -12.69032 -12.58903 -12.49654 -12.29744 -12.11661 -11.91447 -11.83660 -11.82542 -11.74758 -11.62979 -11.55163 -11.48733 -11.37612 -11.33323 -10.88520 -10.79693 -10.65854 -10.37347 -9.18244 -8.96928 -8.28136 -6.31891 1.33431 1.35999 1.46836 2.34137 2.63284 2.92803 3.04829 3.30493 3.34443 3.52147 3.71134 3.79139 3.85145 3.90961 3.95927 4.02738 4.18935 4.20580 4.25405 4.30025 4.35810 4.42233 4.46165 4.49977 4.58284 4.62256 4.65745 4.66853 4.73587 4.74707 4.75894 4.85742 4.86983 4.88510 4.91448 4.96375 5.00038 5.03614 5.04866 5.13140 5.17181 5.23626 5.30404 5.37251 5.46044 5.53067 5.57883 5.62636 5.88402 5.98317 6.23225 6.35623 6.50984 6.66846 6.74901 7.06869 7.31547 8.88880 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018918 B = 0.002359 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.690346 B =11865.528808 C =12331.345563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.539 5.539 3 C 0.172 3.828 4 C -0.517 4.517 5 H 0.034 0.966 6 C 0.004 3.996 7 N -0.950 5.950 8 Si 0.951 3.049 9 H -0.268 1.268 10 H -0.281 1.281 11 H -0.247 1.247 12 C 0.023 3.977 13 C 0.128 3.872 14 H 0.081 0.919 15 O -0.556 6.556 16 C 0.039 3.961 17 N -0.663 5.663 18 C 0.086 3.914 19 H 0.090 0.910 20 C -0.163 4.163 21 H 0.128 0.872 22 C -0.154 4.154 23 C 0.038 3.962 24 O -0.378 6.378 25 C 0.058 3.942 26 H 0.099 0.901 27 C -0.066 4.066 28 C -0.086 4.086 29 C -0.129 4.129 30 C -0.120 4.120 31 C -0.094 4.094 32 H 0.071 0.929 33 H 0.044 0.956 34 H 0.022 0.978 35 H 0.031 0.969 36 H -0.014 1.014 37 H 0.267 0.733 38 H 0.078 0.922 39 H 0.042 0.958 40 H 0.378 0.622 41 H 0.045 0.955 42 H 0.082 0.918 43 H 0.348 0.652 44 H 0.066 0.934 45 H 0.093 0.907 46 H 0.091 0.909 47 H 0.072 0.928 48 H 0.058 0.942 49 H 0.047 0.953 50 H 0.062 0.938 51 H 0.060 0.940 52 H 0.075 0.925 53 H 0.063 0.937 54 H 0.079 0.921 55 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.905 -26.137 -22.155 34.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.263 5.263 3 C 0.045 3.955 4 C -0.555 4.555 5 H 0.052 0.948 6 C -0.193 4.193 7 N -0.591 5.591 8 Si 0.775 3.225 9 H -0.193 1.193 10 H -0.207 1.207 11 H -0.170 1.170 12 C -0.106 4.106 13 C 0.067 3.933 14 H 0.099 0.901 15 O -0.361 6.361 16 C -0.091 4.091 17 N -0.297 5.297 18 C -0.025 4.025 19 H 0.108 0.892 20 C -0.184 4.184 21 H 0.146 0.854 22 C -0.192 4.192 23 C -0.038 4.038 24 O -0.297 6.297 25 C 0.000 4.000 26 H 0.117 0.883 27 C -0.067 4.067 28 C -0.124 4.124 29 C -0.167 4.167 30 C -0.157 4.157 31 C -0.132 4.132 32 H 0.090 0.910 33 H 0.063 0.937 34 H 0.040 0.960 35 H 0.049 0.951 36 H 0.004 0.996 37 H 0.076 0.924 38 H 0.096 0.904 39 H 0.060 0.940 40 H 0.225 0.775 41 H 0.063 0.937 42 H 0.101 0.899 43 H 0.171 0.829 44 H 0.085 0.915 45 H 0.112 0.888 46 H 0.109 0.891 47 H 0.090 0.910 48 H 0.077 0.923 49 H 0.066 0.934 50 H 0.081 0.919 51 H 0.079 0.921 52 H 0.094 0.906 53 H 0.082 0.918 54 H 0.097 0.903 55 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.915 -26.548 -20.810 33.786 hybrid contribution -0.330 1.875 -1.467 2.403 sum 1.585 -24.673 -22.277 33.280 Atomic orbital electron populations 1.22185 0.87933 1.00876 0.99662 1.61719 1.07925 1.14389 1.42264 1.19959 0.95263 0.85854 0.94410 1.21280 1.34840 0.97495 1.01918 0.94809 1.25911 0.97046 0.98441 0.97856 1.70066 1.48656 1.13880 1.26458 0.85657 0.79167 0.78659 0.79061 1.19301 1.20682 1.17015 1.22879 1.00843 0.94988 0.91865 1.21729 0.97715 0.89317 0.84504 0.90099 1.86585 1.25881 1.85029 1.38581 1.22599 1.01271 0.88599 0.96633 1.60161 1.17730 1.09062 1.42703 1.22589 0.97225 0.93634 0.89058 0.89234 1.24759 0.96575 0.96215 1.00806 0.85406 1.22940 0.95595 0.98980 1.01661 1.23586 0.92953 0.92029 0.95265 1.89299 1.39203 1.66906 1.34263 1.24493 0.88470 0.97207 0.89797 0.88345 1.22174 0.93140 0.94929 0.96505 1.21813 0.99528 0.95988 0.95080 1.22585 0.98235 0.97292 0.98577 1.22370 0.97811 1.00275 0.95253 1.21834 0.95617 0.98363 0.97349 0.91008 0.93688 0.95988 0.95098 0.99650 0.92435 0.90361 0.94038 0.77458 0.93668 0.89915 0.82867 0.91528 0.88795 0.89062 0.90988 0.92331 0.93432 0.91886 0.92080 0.90605 0.91773 0.90275 0.90453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.65 9.14 127.69 1.17 2.81 16 2 N -0.54 -22.51 4.62 -927.03 -4.28 -26.79 16 3 C 0.17 8.32 3.79 85.56 0.32 8.64 16 4 C -0.52 -30.61 9.01 25.60 0.23 -30.38 16 5 H 0.03 2.26 7.37 -2.91 -0.02 2.24 16 6 C 0.00 0.26 5.47 84.65 0.46 0.72 16 7 N -0.95 -60.44 13.96 21.45 0.30 -60.14 16 8 Si 0.95 44.17 27.47 68.60 1.88 46.06 16 9 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.25 -10.51 6.54 99.48 0.65 -9.86 16 12 C 0.02 0.71 4.62 86.30 0.40 1.11 16 13 C 0.13 3.38 3.02 30.60 0.09 3.47 16 14 H 0.08 2.28 6.55 -2.39 -0.02 2.27 16 15 O -0.56 -17.44 13.15 -148.98 -1.96 -19.40 16 16 C 0.04 0.77 4.73 86.30 0.41 1.18 16 17 N -0.66 -13.43 5.14 -490.19 -2.52 -15.95 16 18 C 0.09 1.36 3.62 45.18 0.16 1.53 16 19 H 0.09 1.32 7.58 -2.39 -0.02 1.30 16 20 C -0.16 -2.04 4.92 -9.30 -0.05 -2.09 16 21 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 22 C -0.15 -1.99 6.09 31.57 0.19 -1.79 16 23 C 0.04 0.57 6.98 72.47 0.51 1.08 16 24 O -0.38 -7.69 9.01 -148.98 -1.34 -9.03 16 25 C 0.06 0.88 4.84 31.37 0.15 1.04 16 26 H 0.10 1.28 8.03 -2.39 -0.02 1.26 16 27 C -0.07 -1.03 1.03 -51.85 -0.05 -1.08 16 28 C -0.09 -1.74 5.47 31.51 0.17 -1.57 16 29 C -0.13 -2.07 6.91 31.96 0.22 -1.85 16 30 C -0.12 -1.47 6.84 31.76 0.22 -1.25 16 31 C -0.09 -1.05 6.18 31.16 0.19 -0.86 16 32 H 0.07 2.48 6.47 -2.39 -0.02 2.47 16 33 H 0.04 2.07 6.76 -2.39 -0.02 2.05 16 34 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.03 1.47 6.99 -2.39 -0.02 1.45 16 36 H -0.01 -0.66 7.55 -2.38 -0.02 -0.68 16 37 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 38 H 0.08 2.28 7.93 -2.39 -0.02 2.26 16 39 H 0.04 1.17 8.12 -2.39 -0.02 1.15 16 40 H 0.38 9.85 9.05 -74.06 -0.67 9.18 16 41 H 0.05 0.80 7.47 -2.38 -0.02 0.78 16 42 H 0.08 1.54 8.13 -2.39 -0.02 1.52 16 43 H 0.35 7.60 4.52 -89.69 -0.41 7.20 16 44 H 0.07 1.01 5.55 -2.39 -0.01 1.00 16 45 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 46 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.06 1.39 7.94 -2.39 -0.02 1.37 16 49 H 0.05 1.19 7.09 -2.39 -0.02 1.17 16 50 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 51 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 52 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 53 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 54 H 0.08 0.69 7.85 -2.38 -0.02 0.67 16 55 H 0.08 0.74 7.72 -2.38 -0.02 0.73 16 Total: -1.00 -71.53 407.01 -3.38 -74.91 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: -0.26 Total: 29.63 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: 4.80 Total: -19.29 kcal Atomic # 7 Polarization: -96.37 SS G_CDS: -6.50 Total: -102.87 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -3.30 Total: -28.43 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.88 Total: 46.06 kcal Total: -71.53 -3.38 -74.91 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565652230.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.095 kcal (2) G-P(sol) polarization free energy of solvation -71.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds