Wall clock time and date at job start Tue Mar 31 2020 23:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.46916 * 2 1 4 4 N 1.30834 * 125.89610 * 270.01940 * 3 2 1 5 5 N 1.40083 * 108.20467 * 179.97438 * 4 3 2 6 6 C 1.46508 * 126.03443 * 179.97438 * 5 4 3 7 7 C 1.34940 * 107.92723 * 359.75965 * 5 4 3 8 8 C 1.50704 * 126.12925 * 180.23983 * 7 5 4 9 9 C 1.53000 * 109.47106 * 90.17693 * 8 7 5 10 10 C 1.35321 * 107.74434 * 0.38883 * 7 5 4 11 11 C 1.50703 * 126.03834 * 179.87685 * 10 7 5 12 12 N 1.46902 * 109.46547 * 269.71104 * 11 10 7 13 13 C 1.46904 * 110.99534 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.47085 * 180.02562 * 13 12 11 15 15 H 1.09003 * 109.47253 * 305.00344 * 14 13 12 16 16 O 1.42900 * 109.47194 * 64.99751 * 14 13 12 17 17 C 1.52998 * 109.47107 * 184.99848 * 14 13 12 18 18 N 1.46899 * 109.46858 * 175.04575 * 17 14 13 19 19 C 1.46903 * 110.99991 * 163.94840 * 18 17 14 20 20 C 1.46902 * 111.00138 * 287.89426 * 18 17 14 21 21 C 1.50702 * 109.47206 * 170.00004 * 20 18 17 22 22 H 1.07990 * 119.99891 * 0.02562 * 21 20 18 23 23 C 1.37878 * 119.99588 * 179.97438 * 21 20 18 24 24 N 1.31512 * 120.00136 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99737 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47118 * 0.02562 * 25 23 21 27 27 H 1.48492 * 109.46938 * 120.00335 * 25 23 21 28 28 H 1.48505 * 109.46930 * 240.00323 * 25 23 21 29 29 H 1.09000 * 109.47365 * 60.00357 * 1 2 3 30 30 H 1.09004 * 109.47274 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47304 * 300.00140 * 1 2 3 32 32 H 1.08991 * 109.47216 * 239.99338 * 2 1 3 33 33 H 1.09003 * 109.46534 * 119.99302 * 2 1 3 34 34 H 1.09000 * 109.46673 * 90.03021 * 6 5 4 35 35 H 1.08993 * 109.46888 * 210.02415 * 6 5 4 36 36 H 1.08993 * 109.47312 * 330.02596 * 6 5 4 37 37 H 1.09000 * 109.46786 * 210.17376 * 8 7 5 38 38 H 1.08996 * 109.47118 * 330.17299 * 8 7 5 39 39 H 1.08996 * 109.47133 * 300.00027 * 9 8 7 40 40 H 1.09005 * 109.47293 * 59.99778 * 9 8 7 41 41 H 1.08998 * 109.46746 * 180.02562 * 9 8 7 42 42 H 1.08997 * 109.46893 * 149.71235 * 11 10 7 43 43 H 1.08997 * 109.46991 * 29.71120 * 11 10 7 44 44 H 1.00901 * 111.00190 * 56.04996 * 12 11 10 45 45 H 1.08996 * 109.47355 * 59.99871 * 13 12 11 46 46 H 1.09001 * 109.46826 * 299.99768 * 13 12 11 47 47 H 0.96698 * 114.00266 * 60.00042 * 16 14 13 48 48 H 1.08997 * 109.47560 * 55.04389 * 17 14 13 49 49 H 1.08998 * 109.46907 * 295.04026 * 17 14 13 50 50 H 1.08998 * 109.47439 * 189.27288 * 19 18 17 51 51 H 1.08994 * 109.47470 * 69.26701 * 19 18 17 52 52 H 1.09004 * 109.46549 * 309.26905 * 19 18 17 53 53 H 1.08997 * 109.47475 * 290.00611 * 20 18 17 54 54 H 1.09000 * 109.46537 * 50.00068 * 20 18 17 55 55 H 0.97003 * 119.99947 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2876 2.1442 -1.0599 5 7 2.7320 3.4026 -0.6342 6 6 3.1257 4.5162 -1.5010 7 6 2.7289 3.4096 0.7152 8 6 3.1288 4.5632 1.5987 9 6 1.9017 5.4274 1.8957 10 6 2.3055 2.1941 1.1330 11 6 2.1496 1.7538 2.5658 12 7 3.4050 1.1497 3.0316 13 6 3.2899 0.7070 4.4276 14 6 4.6139 0.0853 4.8763 15 1 4.8919 -0.7134 4.1885 16 8 5.6333 1.0867 4.8801 17 6 4.4565 -0.4875 6.2863 18 7 5.6892 -1.1879 6.6707 19 6 5.7335 -1.4182 8.1209 20 6 5.8295 -2.4504 5.9328 21 6 7.2066 -3.0170 6.1639 22 1 7.9074 -2.4921 6.7960 23 6 7.5715 -4.2062 5.5691 24 7 6.7179 -4.8456 4.7996 25 14 9.2783 -4.9090 5.8561 26 1 10.0411 -4.0053 6.7543 27 1 9.1624 -6.2491 6.4852 28 1 9.9880 -5.0314 4.5574 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8898 33 1 1.8933 -0.5138 0.8901 34 1 2.2545 5.1349 -1.7158 35 1 3.8833 5.1175 -0.9984 36 1 3.5323 4.1247 -2.4334 37 1 3.5381 4.1799 2.5335 38 1 3.8829 5.1649 1.0915 39 1 1.4923 5.8105 0.9610 40 1 1.1475 4.8256 2.4030 41 1 2.1911 6.2619 2.5344 42 1 1.3459 1.0208 2.6352 43 1 1.9091 2.6166 3.1869 44 1 4.1779 1.7881 2.9169 45 1 2.4942 -0.0334 4.5096 46 1 3.0571 1.5623 5.0619 47 1 5.4523 1.8300 5.4714 48 1 3.6208 -1.1871 6.3031 49 1 4.2654 0.3237 6.9887 50 1 6.7205 -1.7865 8.4003 51 1 4.9794 -2.1560 8.3948 52 1 5.5333 -0.4828 8.6435 53 1 5.0807 -3.1609 6.2827 54 1 5.6862 -2.2665 4.8680 55 1 6.9747 -5.6821 4.3809 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577622112.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:16 Heat of formation + Delta-G solvation = -12.016529 kcal Electronic energy + Delta-G solvation = -30131.093701 eV Core-core repulsion = 26203.047691 eV Total energy + Delta-G solvation = -3928.046010 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.39134 -39.53858 -37.49800 -36.34851 -35.95855 -34.58834 -34.26056 -32.71100 -31.48308 -30.08986 -29.27960 -28.14996 -26.85815 -25.71691 -24.82269 -24.42112 -23.63205 -22.73875 -21.67121 -20.48890 -20.13457 -18.60399 -17.78128 -17.31848 -17.01268 -16.57147 -16.54451 -16.19907 -15.92867 -15.70319 -15.45907 -15.32059 -15.01641 -14.88511 -14.82236 -14.41207 -14.22696 -13.97788 -13.94117 -13.71131 -13.53373 -13.37658 -13.12381 -12.97492 -12.83565 -12.74590 -12.71946 -12.55393 -12.50348 -12.44224 -12.28597 -12.17899 -12.12505 -11.99036 -11.90463 -11.47526 -11.32877 -11.26671 -10.73083 -10.59230 -10.01456 -9.38786 -9.09282 -8.92159 -8.18585 -6.27903 0.90794 1.39806 1.41443 1.54690 1.64188 1.72101 2.41378 3.10778 3.15238 3.51894 3.59760 3.64436 3.75408 3.98267 4.05496 4.13616 4.17929 4.21540 4.28876 4.32686 4.38687 4.41552 4.43280 4.48160 4.52339 4.60199 4.63546 4.65974 4.67086 4.71394 4.80353 4.81237 4.85733 4.86921 4.98376 5.04137 5.07730 5.10310 5.16078 5.23427 5.30150 5.31984 5.32096 5.34471 5.38010 5.66962 5.74721 6.08890 6.15173 6.21728 6.37760 6.53930 6.68754 6.80885 6.88406 7.10911 7.41344 8.92760 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012425 B = 0.002364 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.934207 B =11839.505761 C =12566.845645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.047 4.047 3 C 0.085 3.915 4 N -0.339 5.339 5 N -0.379 5.379 6 C 0.093 3.907 7 C 0.097 3.903 8 C -0.060 4.060 9 C -0.140 4.140 10 C -0.249 4.249 11 C 0.149 3.851 12 N -0.694 5.694 13 C 0.046 3.954 14 C 0.124 3.876 15 H 0.060 0.940 16 O -0.560 6.560 17 C 0.028 3.972 18 N -0.544 5.544 19 C 0.043 3.957 20 C 0.209 3.791 21 C -0.521 4.521 22 H 0.060 0.940 23 C -0.001 4.001 24 N -0.935 5.935 25 Si 0.968 3.032 26 H -0.263 1.263 27 H -0.276 1.276 28 H -0.280 1.280 29 H 0.048 0.952 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.109 0.891 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.048 0.952 44 H 0.343 0.657 45 H 0.077 0.923 46 H 0.059 0.941 47 H 0.379 0.621 48 H 0.027 0.973 49 H 0.099 0.901 50 H 0.052 0.948 51 H 0.007 0.993 52 H 0.084 0.916 53 H -0.041 1.041 54 H 0.004 0.996 55 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.806 24.072 -5.945 28.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.086 4.086 3 C -0.081 4.081 4 N -0.161 5.161 5 N -0.160 5.160 6 C -0.047 4.047 7 C -0.032 4.032 8 C -0.099 4.099 9 C -0.198 4.198 10 C -0.261 4.261 11 C 0.020 3.980 12 N -0.326 5.326 13 C -0.084 4.084 14 C 0.064 3.936 15 H 0.078 0.922 16 O -0.366 6.366 17 C -0.101 4.101 18 N -0.268 5.268 19 C -0.106 4.106 20 C 0.083 3.917 21 C -0.559 4.559 22 H 0.078 0.922 23 C -0.199 4.199 24 N -0.575 5.575 25 Si 0.793 3.207 26 H -0.187 1.187 27 H -0.202 1.202 28 H -0.206 1.206 29 H 0.067 0.933 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.128 0.872 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.101 0.899 42 H 0.091 0.909 43 H 0.066 0.934 44 H 0.162 0.838 45 H 0.095 0.905 46 H 0.077 0.923 47 H 0.227 0.773 48 H 0.045 0.955 49 H 0.118 0.882 50 H 0.071 0.929 51 H 0.026 0.974 52 H 0.103 0.897 53 H -0.024 1.024 54 H 0.022 0.978 55 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.239 23.376 -8.252 28.103 hybrid contribution -0.106 -0.465 1.432 1.510 sum -13.345 22.911 -6.820 27.377 Atomic orbital electron populations 1.21618 0.93013 1.02677 1.01780 1.19986 0.97011 0.88456 1.03140 1.22408 0.97957 0.97159 0.90579 1.77238 1.23341 0.92064 1.23490 1.48585 1.51371 1.11257 1.04810 1.22123 1.02222 0.85533 0.94823 1.21335 0.99514 0.97608 0.84720 1.20347 0.99533 0.92178 0.97845 1.21683 0.96511 0.99510 1.02057 1.19735 1.16064 0.94095 0.96165 1.20032 0.91659 0.97133 0.89155 1.60326 1.06130 1.46114 1.20079 1.22462 0.96978 0.99928 0.89060 1.21714 0.87264 0.89855 0.94737 0.92182 1.86657 1.47231 1.34576 1.68151 1.22801 0.90826 0.98579 0.97925 1.61951 1.35475 1.23450 1.05922 1.22206 1.00457 0.99997 0.87902 1.19393 0.94971 0.84752 0.92611 1.21505 0.99531 1.05759 1.29128 0.92153 1.25928 1.01723 0.97357 0.94893 1.70097 1.37152 1.17299 1.32981 0.85353 0.79154 0.78155 0.78076 1.18707 1.20185 1.20578 0.93267 0.90720 0.92244 0.91380 0.89944 0.89456 0.87225 0.89473 0.89121 0.88923 0.92797 0.92861 0.89854 0.90872 0.93363 0.83777 0.90497 0.92300 0.77296 0.95469 0.88249 0.92867 0.97449 0.89747 1.02390 0.97789 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.59 9.89 71.98 0.71 -1.88 16 2 C -0.05 -1.14 6.17 29.85 0.18 -0.96 16 3 C 0.08 2.30 6.47 43.10 0.28 2.58 16 4 N -0.34 -9.60 12.58 -47.39 -0.60 -10.20 16 5 N -0.38 -8.24 4.01 -356.03 -1.43 -9.66 16 6 C 0.09 1.13 11.27 127.77 1.44 2.57 16 7 C 0.10 1.96 6.19 41.41 0.26 2.21 16 8 C -0.06 -0.73 5.77 29.85 0.17 -0.56 16 9 C -0.14 -1.31 9.89 71.98 0.71 -0.60 16 10 C -0.25 -5.92 5.61 -20.14 -0.11 -6.04 16 11 C 0.15 3.15 5.45 85.56 0.47 3.61 16 12 N -0.69 -17.48 6.49 -517.93 -3.36 -20.84 16 13 C 0.05 1.09 5.36 86.30 0.46 1.55 16 14 C 0.12 4.07 3.26 30.59 0.10 4.17 16 15 H 0.06 2.64 6.46 -2.39 -0.02 2.62 16 16 O -0.56 -17.82 12.81 -148.98 -1.91 -19.72 16 17 C 0.03 0.93 4.61 86.30 0.40 1.32 16 18 N -0.54 -23.77 4.66 -927.06 -4.32 -28.08 16 19 C 0.04 1.62 9.32 127.69 1.19 2.81 16 20 C 0.21 11.57 4.57 85.56 0.39 11.96 16 21 C -0.52 -30.81 8.58 25.60 0.22 -30.59 16 22 H 0.06 3.52 7.10 -2.92 -0.02 3.50 16 23 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 24 N -0.93 -58.33 13.29 21.45 0.28 -58.04 16 25 Si 0.97 46.02 29.54 68.60 2.03 48.05 16 26 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 27 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 28 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 29 H 0.05 0.98 8.14 -2.39 -0.02 0.97 16 30 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.08 2.14 7.92 -2.39 -0.02 2.12 16 34 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.11 0.76 7.06 -2.39 -0.02 0.74 16 36 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.09 1.09 7.77 -2.39 -0.02 1.07 16 38 H 0.09 0.82 7.08 -2.39 -0.02 0.80 16 39 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 41 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.07 1.57 7.92 -2.39 -0.02 1.55 16 43 H 0.05 0.83 7.76 -2.39 -0.02 0.81 16 44 H 0.34 8.79 8.28 -89.69 -0.74 8.05 16 45 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.38 8.09 9.05 -74.06 -0.67 7.42 16 48 H 0.03 0.94 8.05 -2.39 -0.02 0.92 16 49 H 0.10 2.53 7.82 -2.39 -0.02 2.51 16 50 H 0.05 2.20 7.02 -2.39 -0.02 2.18 16 51 H 0.01 0.27 8.07 -2.39 -0.02 0.25 16 52 H 0.08 2.48 7.88 -2.39 -0.02 2.46 16 53 H -0.04 -2.48 8.07 -2.39 -0.02 -2.50 16 54 H 0.00 0.25 6.34 -2.39 -0.02 0.23 16 55 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -78.41 440.06 -2.51 -80.92 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: -0.55 Total: 25.01 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: 7.33 Total: -7.43 kcal Atomic # 7 Polarization: -117.41 SS G_CDS: -9.42 Total: -126.83 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -1.91 Total: -19.72 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -78.41 -2.51 -80.92 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577622112.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.903 kcal (2) G-P(sol) polarization free energy of solvation -78.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds