Wall clock time and date at job start Tue Mar 31 2020 23:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50692 * 109.47741 * 2 1 4 4 N 1.30835 * 125.89676 * 270.02569 * 3 2 1 5 5 N 1.40089 * 108.20961 * 179.97438 * 4 3 2 6 6 C 1.46490 * 126.04206 * 179.97438 * 5 4 3 7 7 C 1.34955 * 107.92117 * 359.75846 * 5 4 3 8 8 C 1.50699 * 126.12724 * 180.24322 * 7 5 4 9 9 C 1.52995 * 109.47246 * 90.17454 * 8 7 5 10 10 C 1.35320 * 107.74208 * 0.38610 * 7 5 4 11 11 C 1.50702 * 126.03463 * 179.87339 * 10 7 5 12 12 N 1.46893 * 109.47178 * 269.71783 * 11 10 7 13 13 C 1.46901 * 111.00024 * 180.02562 * 12 11 10 14 14 C 1.52999 * 109.47409 * 180.02562 * 13 12 11 15 15 H 1.09003 * 109.47406 * 59.99712 * 14 13 12 16 16 O 1.42905 * 109.46872 * 299.99796 * 14 13 12 17 17 C 1.52998 * 109.47318 * 179.97438 * 14 13 12 18 18 N 1.46906 * 109.47197 * 182.15693 * 17 14 13 19 19 C 1.46901 * 110.99925 * 199.76710 * 18 17 14 20 20 C 1.46892 * 110.99774 * 75.81142 * 18 17 14 21 21 C 1.50701 * 109.46993 * 189.99771 * 20 18 17 22 22 H 1.07994 * 120.00328 * 0.02562 * 21 20 18 23 23 C 1.37880 * 120.00179 * 179.97438 * 21 20 18 24 24 N 1.31513 * 120.00377 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 119.99660 * 0.02562 * 23 21 20 26 26 H 1.48504 * 109.47222 * 89.99907 * 25 23 21 27 27 H 1.48506 * 109.46921 * 209.99294 * 25 23 21 28 28 H 1.48496 * 109.47220 * 329.99339 * 25 23 21 29 29 H 1.08990 * 109.47532 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46920 * 300.00731 * 1 2 3 31 31 H 1.09002 * 109.46583 * 60.00176 * 1 2 3 32 32 H 1.09002 * 109.47417 * 239.99246 * 2 1 3 33 33 H 1.09006 * 109.47071 * 119.99831 * 2 1 3 34 34 H 1.08996 * 109.47461 * 90.02391 * 6 5 4 35 35 H 1.09005 * 109.47683 * 210.02521 * 6 5 4 36 36 H 1.09002 * 109.47470 * 330.02689 * 6 5 4 37 37 H 1.08998 * 109.46680 * 210.17307 * 8 7 5 38 38 H 1.08996 * 109.47122 * 330.17090 * 8 7 5 39 39 H 1.08996 * 109.47357 * 59.99779 * 9 8 7 40 40 H 1.09007 * 109.47128 * 180.02562 * 9 8 7 41 41 H 1.09007 * 109.46942 * 299.99488 * 9 8 7 42 42 H 1.09006 * 109.46941 * 149.71486 * 11 10 7 43 43 H 1.08997 * 109.47222 * 29.72097 * 11 10 7 44 44 H 1.00901 * 111.00017 * 303.95242 * 12 11 10 45 45 H 1.08995 * 109.47180 * 59.99940 * 13 12 11 46 46 H 1.09002 * 109.47373 * 300.00035 * 13 12 11 47 47 H 0.96701 * 114.00201 * 299.99769 * 16 14 13 48 48 H 1.09000 * 109.47245 * 62.15773 * 17 14 13 49 49 H 1.09002 * 109.47237 * 302.15962 * 17 14 13 50 50 H 1.08999 * 109.47031 * 291.01429 * 19 18 17 51 51 H 1.09002 * 109.47006 * 51.00954 * 19 18 17 52 52 H 1.08993 * 109.46940 * 171.01218 * 19 18 17 53 53 H 1.08994 * 109.47530 * 310.00139 * 20 18 17 54 54 H 1.09002 * 109.46948 * 70.00276 * 20 18 17 55 55 H 0.96992 * 120.00116 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 7 2.2878 2.1441 -1.0599 5 7 2.7324 3.4025 -0.6342 6 6 3.1262 4.5160 -1.5009 7 6 2.7294 3.4094 0.7153 8 6 3.1295 4.5628 1.5988 9 6 1.9025 5.4272 1.8958 10 6 2.3058 2.1940 1.1329 11 6 2.1500 1.7536 2.5657 12 7 3.4053 1.1493 3.0315 13 6 3.2902 0.7066 4.4275 14 6 4.6142 0.0847 4.8761 15 1 5.4097 0.8253 4.7943 16 8 4.9197 -1.0365 4.0445 17 6 4.4945 -0.3758 6.3303 18 7 5.7813 -0.9258 6.7772 19 6 5.6056 -1.7854 7.9555 20 6 6.7470 0.1474 7.0477 21 6 8.1140 -0.4494 7.2632 22 1 8.2516 -1.5189 7.2045 23 6 9.1891 0.3702 7.5341 24 7 10.3820 -0.1506 7.7226 25 14 8.9512 2.2203 7.6348 26 1 8.6253 2.6021 9.0324 27 1 10.2006 2.9036 7.2136 28 1 7.8388 2.6258 6.7386 29 1 -0.3634 -1.0275 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.2551 5.1348 -1.7158 35 1 3.8840 5.1172 -0.9984 36 1 3.5326 4.1245 -2.4335 37 1 3.5388 4.1795 2.5334 38 1 3.8836 5.1645 1.0915 39 1 1.1484 4.8256 2.4031 40 1 2.1920 6.2618 2.5345 41 1 1.4932 5.8105 0.9611 42 1 1.3461 1.0207 2.6352 43 1 1.9096 2.6164 3.1869 44 1 3.6835 0.3866 2.4324 45 1 2.4944 -0.0337 4.5095 46 1 3.0575 1.5618 5.0619 47 1 4.2532 -1.7368 4.0678 48 1 3.7250 -1.1441 6.4059 49 1 4.2239 0.4725 6.9590 50 1 5.3252 -1.1736 8.8129 51 1 4.8212 -2.5161 7.7584 52 1 6.5400 -2.3041 8.1693 53 1 6.7784 0.8305 6.1989 54 1 6.4435 0.6924 7.9416 55 1 11.1382 0.4259 7.9136 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577622113.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:20 Heat of formation + Delta-G solvation = -9.056470 kcal Electronic energy + Delta-G solvation = -30197.088239 eV Core-core repulsion = 26269.170587 eV Total energy + Delta-G solvation = -3927.917652 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.38552 -39.55010 -37.55064 -36.36955 -35.88490 -34.57675 -34.25863 -32.71678 -31.53955 -30.28829 -29.69967 -28.15233 -26.84057 -25.61483 -24.62746 -24.45246 -23.57726 -22.64084 -21.60377 -20.44614 -20.18715 -19.03681 -17.60526 -17.30725 -17.20896 -16.64673 -16.48416 -16.14960 -15.93880 -15.72367 -15.47077 -15.29288 -14.99021 -14.92211 -14.68243 -14.55005 -14.41274 -14.05893 -13.95223 -13.76599 -13.53862 -13.29970 -13.21887 -13.12753 -13.02909 -12.75477 -12.65883 -12.58596 -12.47816 -12.42750 -12.18014 -12.11755 -11.99277 -11.92862 -11.80221 -11.61874 -11.41173 -11.27690 -10.77503 -10.72754 -10.01879 -9.39320 -9.09253 -8.92525 -8.27087 -6.29745 0.91907 1.32849 1.36417 1.47097 1.63113 1.71993 2.35203 3.03679 3.09466 3.52412 3.59550 3.62504 3.77855 3.98537 4.05788 4.13397 4.19294 4.21312 4.29360 4.35240 4.37202 4.41508 4.43531 4.46358 4.51366 4.59888 4.61482 4.64845 4.65761 4.72274 4.73645 4.81392 4.82792 4.87258 4.92984 4.98107 5.03231 5.04206 5.07237 5.21650 5.22387 5.27522 5.31160 5.32636 5.41513 5.58137 5.75645 5.99924 6.15402 6.21012 6.41657 6.52197 6.69410 6.76673 6.80434 7.10837 7.33529 8.89980 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011868 B = 0.002584 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.763729 B =10835.260975 C =12131.238195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.044 4.044 3 C 0.077 3.923 4 N -0.336 5.336 5 N -0.381 5.381 6 C 0.093 3.907 7 C 0.105 3.895 8 C -0.062 4.062 9 C -0.138 4.138 10 C -0.250 4.250 11 C 0.149 3.851 12 N -0.692 5.692 13 C 0.043 3.957 14 C 0.122 3.878 15 H 0.067 0.933 16 O -0.562 6.562 17 C 0.025 3.975 18 N -0.543 5.543 19 C 0.043 3.957 20 C 0.174 3.826 21 C -0.514 4.514 22 H 0.035 0.965 23 C 0.005 3.995 24 N -0.950 5.950 25 Si 0.946 3.054 26 H -0.264 1.264 27 H -0.281 1.281 28 H -0.250 1.250 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.044 0.956 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.055 0.945 40 H 0.078 0.922 41 H 0.054 0.946 42 H 0.044 0.956 43 H 0.078 0.922 44 H 0.343 0.657 45 H 0.054 0.946 46 H 0.084 0.916 47 H 0.378 0.622 48 H 0.097 0.903 49 H 0.041 0.959 50 H 0.017 0.983 51 H 0.083 0.917 52 H 0.041 0.959 53 H 0.025 0.975 54 H -0.015 1.015 55 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.911 10.062 -14.768 31.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.083 4.083 3 C -0.089 4.089 4 N -0.158 5.158 5 N -0.163 5.163 6 C -0.047 4.047 7 C -0.024 4.024 8 C -0.101 4.101 9 C -0.196 4.196 10 C -0.261 4.261 11 C 0.020 3.980 12 N -0.324 5.324 13 C -0.087 4.087 14 C 0.061 3.939 15 H 0.085 0.915 16 O -0.368 6.368 17 C -0.104 4.104 18 N -0.267 5.267 19 C -0.105 4.105 20 C 0.047 3.953 21 C -0.552 4.552 22 H 0.053 0.947 23 C -0.192 4.192 24 N -0.591 5.591 25 Si 0.770 3.230 26 H -0.189 1.189 27 H -0.207 1.207 28 H -0.173 1.173 29 H 0.098 0.902 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.123 0.877 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.103 0.897 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.096 0.904 44 H 0.162 0.838 45 H 0.072 0.928 46 H 0.102 0.898 47 H 0.226 0.774 48 H 0.115 0.885 49 H 0.059 0.941 50 H 0.036 0.964 51 H 0.102 0.898 52 H 0.060 0.940 53 H 0.043 0.957 54 H 0.003 0.997 55 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -24.674 10.946 -16.474 31.623 hybrid contribution -0.442 -0.035 1.499 1.564 sum -25.116 10.912 -14.975 31.211 Atomic orbital electron populations 1.21636 0.93204 1.02849 1.01685 1.20016 0.96917 0.87850 1.03513 1.22547 0.98380 0.97612 0.90388 1.77218 1.23110 0.91877 1.23611 1.48582 1.51552 1.11360 1.04772 1.22095 1.02133 0.85657 0.94815 1.21261 0.98818 0.97853 0.84459 1.20309 0.99295 0.92318 0.98162 1.21670 0.96525 0.99436 1.01955 1.19727 1.16009 0.94360 0.96024 1.20039 0.89870 0.98584 0.89554 1.60383 1.32236 1.37014 1.02769 1.22482 0.95798 0.99898 0.90503 1.21788 0.96470 0.87533 0.88060 0.91537 1.86670 1.51734 1.30875 1.67474 1.22861 0.91521 0.99632 0.96388 1.61717 1.08981 1.21501 1.34487 1.22189 1.01113 0.96587 0.90583 1.19945 0.91034 0.90444 0.93885 1.21292 0.92782 0.94308 1.46835 0.94690 1.25881 0.94588 1.04182 0.94577 1.70055 1.00805 1.37542 1.50721 0.85724 0.78432 0.79369 0.79511 1.18942 1.20686 1.17340 0.90249 0.92427 0.93631 0.90765 0.89403 0.89468 0.87715 0.89289 0.89225 0.89666 0.92596 0.90326 0.92708 0.93789 0.90384 0.83820 0.92777 0.89783 0.77411 0.88469 0.94071 0.96404 0.89804 0.93968 0.95671 0.99725 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.90 71.98 0.71 -1.21 16 2 C -0.04 -0.77 6.17 29.85 0.18 -0.58 16 3 C 0.08 1.77 6.47 43.10 0.28 2.05 16 4 N -0.34 -8.66 12.58 -47.39 -0.60 -9.25 16 5 N -0.38 -8.11 4.01 -356.04 -1.43 -9.54 16 6 C 0.09 1.17 11.27 127.77 1.44 2.61 16 7 C 0.11 2.16 6.19 41.40 0.26 2.42 16 8 C -0.06 -0.94 5.77 29.85 0.17 -0.77 16 9 C -0.14 -1.59 9.89 71.98 0.71 -0.88 16 10 C -0.25 -5.43 5.61 -20.14 -0.11 -5.54 16 11 C 0.15 2.76 5.45 85.56 0.47 3.23 16 12 N -0.69 -15.27 6.49 -517.94 -3.36 -18.64 16 13 C 0.04 0.88 5.39 86.30 0.47 1.35 16 14 C 0.12 3.52 3.31 30.59 0.10 3.62 16 15 H 0.07 2.47 6.73 -2.39 -0.02 2.46 16 16 O -0.56 -17.21 12.58 -148.98 -1.87 -19.08 16 17 C 0.02 0.73 4.65 86.30 0.40 1.13 16 18 N -0.54 -22.29 4.59 -927.07 -4.25 -26.54 16 19 C 0.04 1.62 9.31 127.69 1.19 2.81 16 20 C 0.17 8.55 3.62 85.56 0.31 8.86 16 21 C -0.51 -30.78 9.13 25.60 0.23 -30.55 16 22 H 0.03 2.34 7.34 -2.91 -0.02 2.32 16 23 C 0.00 0.27 5.47 84.66 0.46 0.73 16 24 N -0.95 -61.10 13.96 21.45 0.30 -60.80 16 25 Si 0.95 45.15 27.47 68.60 1.88 47.03 16 26 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 27 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 28 H -0.25 -11.15 6.54 99.48 0.65 -10.50 16 29 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.09 1.36 7.92 -2.38 -0.02 1.35 16 34 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.10 0.89 7.06 -2.38 -0.02 0.87 16 36 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.09 1.58 7.77 -2.39 -0.02 1.56 16 38 H 0.08 1.07 7.08 -2.39 -0.02 1.06 16 39 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 41 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 42 H 0.04 0.72 7.92 -2.38 -0.02 0.70 16 43 H 0.08 1.35 7.76 -2.39 -0.02 1.33 16 44 H 0.34 8.23 8.11 -89.69 -0.73 7.50 16 45 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 47 H 0.38 8.07 9.05 -74.06 -0.67 7.40 16 48 H 0.10 2.22 7.75 -2.39 -0.02 2.20 16 49 H 0.04 1.17 8.00 -2.39 -0.02 1.15 16 50 H 0.02 0.63 8.08 -2.39 -0.02 0.61 16 51 H 0.08 2.44 7.85 -2.39 -0.02 2.42 16 52 H 0.04 1.84 7.01 -2.39 -0.02 1.82 16 53 H 0.03 1.26 5.66 -2.39 -0.01 1.25 16 54 H -0.01 -0.71 7.50 -2.39 -0.02 -0.73 16 55 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 Total: -1.00 -78.82 436.48 -2.64 -81.47 By element: Atomic # 1 Polarization: 26.67 SS G_CDS: -0.59 Total: 26.08 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: 7.27 Total: -10.73 kcal Atomic # 7 Polarization: -115.43 SS G_CDS: -9.34 Total: -124.77 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -1.87 Total: -19.08 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.88 Total: 47.03 kcal Total: -78.82 -2.64 -81.47 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577622113.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.413 kcal (2) G-P(sol) polarization free energy of solvation -78.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds