Wall clock time and date at job start Tue Mar 31 2020 22:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46501 * 120.00036 * 2 1 4 4 C 1.50700 * 109.46982 * 90.00296 * 3 2 1 5 5 H 1.07999 * 119.99797 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99994 * 179.72935 * 4 3 2 7 7 N 1.31514 * 119.99809 * 180.02562 * 6 4 3 8 8 Si 1.86795 * 120.00200 * 359.97438 * 6 4 3 9 9 H 1.48499 * 109.46993 * 90.00380 * 8 6 4 10 10 H 1.48498 * 109.47410 * 210.00518 * 8 6 4 11 11 H 1.48502 * 109.47223 * 330.00594 * 8 6 4 12 12 C 1.34781 * 119.99988 * 180.02562 * 2 1 3 13 13 O 1.21285 * 119.99772 * 179.97438 * 12 2 1 14 14 C 1.50700 * 119.99909 * 359.97438 * 12 2 1 15 15 C 1.52999 * 109.46728 * 180.02562 * 14 12 2 16 16 N 1.46901 * 109.46882 * 179.97438 * 15 14 12 17 17 C 1.46848 * 110.99560 * 66.04984 * 16 15 14 18 18 C 1.53041 * 109.52117 * 174.16151 * 17 16 15 19 19 C 1.53122 * 109.28121 * 59.17289 * 18 17 16 20 20 H 1.09007 * 109.51854 * 62.25165 * 19 18 17 21 21 O 1.42898 * 109.52192 * 182.37894 * 19 18 17 22 22 C 1.53117 * 109.16026 * 302.34928 * 19 18 17 23 23 H 1.08999 * 109.50268 * 297.70822 * 22 19 18 24 24 C 1.52998 * 109.50439 * 177.63199 * 22 19 18 25 25 C 1.54264 * 110.03280 * 298.75682 * 24 22 19 26 26 C 1.54885 * 104.19527 * 217.10351 * 25 24 22 27 27 C 1.54889 * 102.75093 * 37.93975 * 26 25 24 28 28 C 1.53865 * 110.03576 * 181.58398 * 24 22 19 29 29 C 1.46838 * 111.00296 * 301.83762 * 16 15 14 30 30 H 1.09000 * 109.47163 * 90.00054 * 1 2 3 31 31 H 1.08998 * 109.46729 * 209.99505 * 1 2 3 32 32 H 1.08996 * 109.47321 * 329.99551 * 1 2 3 33 33 H 1.08995 * 109.47086 * 330.00810 * 3 2 1 34 34 H 1.09000 * 109.47533 * 210.00672 * 3 2 1 35 35 H 0.97005 * 120.00145 * 180.02562 * 7 6 4 36 36 H 1.09002 * 109.46746 * 299.99857 * 14 12 2 37 37 H 1.08998 * 109.47229 * 60.00519 * 14 12 2 38 38 H 1.09000 * 109.47441 * 299.99847 * 15 14 12 39 39 H 1.08998 * 109.47233 * 60.00043 * 15 14 12 40 40 H 1.09007 * 109.46333 * 294.17155 * 17 16 15 41 41 H 1.08994 * 109.46663 * 54.15453 * 17 16 15 42 42 H 1.09001 * 109.50235 * 179.11387 * 18 17 16 43 43 H 1.09006 * 109.50142 * 299.23128 * 18 17 16 44 44 H 0.96698 * 114.00007 * 299.99814 * 21 19 18 45 45 H 1.09005 * 110.01706 * 60.19448 * 24 22 19 46 46 H 1.08995 * 110.48311 * 335.77956 * 25 24 22 47 47 H 1.09003 * 110.48554 * 98.42372 * 25 24 22 48 48 H 1.09007 * 110.75708 * 279.62495 * 26 25 24 49 49 H 1.09003 * 110.75932 * 156.25463 * 26 25 24 50 50 H 1.08996 * 110.48961 * 203.38228 * 27 26 25 51 51 H 1.08997 * 110.60004 * 80.78826 * 27 26 25 52 52 H 1.08999 * 110.03994 * 238.57205 * 28 24 22 53 53 H 1.09000 * 110.03082 * 359.95491 * 28 24 22 54 54 H 1.09003 * 109.45910 * 305.85512 * 29 16 15 55 55 H 1.08995 * 109.46639 * 65.81697 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 1.4208 5 1 2.0975 1.0961 2.2417 6 6 3.1314 2.8748 1.6728 7 7 3.3511 3.2541 2.9127 8 14 3.7456 3.9219 0.2531 9 1 2.6990 4.9049 -0.1258 10 1 4.9761 4.6433 0.6661 11 1 4.0498 3.0499 -0.9098 12 6 2.1389 -1.1672 -0.0005 13 8 3.3518 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 6 2.3797 -3.6352 -0.0005 16 7 1.6452 -4.9074 0.0001 17 6 0.8997 -5.0852 -1.2525 18 6 0.2673 -6.4786 -1.2779 19 6 -0.6713 -6.6298 -0.0776 20 1 -1.4768 -5.8990 -0.1508 21 8 -1.2222 -7.9482 -0.0653 22 6 0.1196 -6.3922 1.2118 23 1 0.9005 -7.1470 1.3040 24 6 -0.8231 -6.4831 2.4134 25 6 -1.9148 -5.3979 2.3120 26 6 -2.1310 -4.9388 3.7753 27 6 -0.6957 -4.9633 4.3570 28 6 -0.0481 -6.2070 3.7136 29 6 0.7562 -5.0013 1.1650 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5139 33 1 1.6084 2.0284 -0.5137 34 1 3.1499 1.1385 -0.5139 35 1 3.8310 4.0782 3.0901 36 1 0.7591 -2.5302 0.8897 37 1 0.7585 -2.5299 -0.8903 38 1 3.0064 -3.5775 -0.8905 39 1 3.0064 -3.5774 0.8894 40 1 0.1167 -4.3297 -1.3196 41 1 1.5796 -4.9796 -2.0979 42 1 -0.2990 -6.6044 -2.2008 43 1 1.0506 -7.2347 -1.2249 44 1 -1.7333 -8.1683 -0.8561 45 1 -1.2810 -7.4715 2.4545 46 1 -1.5696 -4.5659 1.6982 47 1 -2.8341 -5.8184 1.9043 48 1 -2.7758 -5.6377 4.3082 49 1 -2.5434 -3.9302 3.8069 50 1 -0.7253 -5.0667 5.4416 51 1 -0.1523 -4.0615 4.0753 52 1 -0.1304 -7.0609 4.3860 53 1 0.9999 -6.0089 3.4887 54 1 1.3319 -4.8345 2.0755 55 1 -0.0260 -4.2463 1.0868 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584396435.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:09 Heat of formation + Delta-G solvation = -121.151544 kcal Electronic energy + Delta-G solvation = -31471.676046 eV Core-core repulsion = 27506.604835 eV Total energy + Delta-G solvation = -3965.071211 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.42049 -40.57988 -38.49328 -37.53526 -36.64535 -34.74566 -33.94351 -32.49107 -31.29451 -29.83411 -29.56086 -28.09219 -27.36959 -25.99183 -24.40858 -23.97988 -22.69272 -21.83305 -20.78712 -20.10697 -19.45692 -19.16840 -18.23617 -18.01926 -17.16641 -17.07235 -16.74239 -16.46995 -16.09818 -15.88443 -15.62976 -15.29452 -15.23581 -14.66576 -14.64103 -14.41055 -14.26169 -14.03990 -13.74460 -13.70671 -13.63654 -13.36416 -13.32040 -13.11070 -12.88731 -12.81842 -12.40626 -12.36452 -12.29644 -12.12378 -12.04301 -11.91773 -11.85875 -11.83694 -11.77527 -11.49516 -11.34707 -11.14613 -10.92812 -10.83843 -10.69421 -10.62454 -9.41732 -9.26086 -8.35780 -6.41186 1.30525 1.35574 1.46188 1.76924 2.29445 2.31108 2.87256 2.98548 3.32453 3.59426 3.70731 3.78511 3.80314 3.91880 3.94541 3.99805 4.03092 4.21865 4.24409 4.28995 4.32667 4.43359 4.49229 4.59520 4.61939 4.62947 4.67705 4.71667 4.77405 4.78973 4.82611 4.84695 4.88180 4.94124 4.95832 4.98139 5.00470 5.05157 5.10421 5.12901 5.15281 5.22941 5.29186 5.32747 5.44385 5.48644 5.51060 5.59222 5.60311 6.03017 6.15297 6.21563 6.60011 6.67544 6.97410 7.19726 7.40086 8.81272 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014606 B = 0.002827 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.498882 B = 9901.577139 C =10966.340311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.609 5.609 3 C 0.223 3.777 4 C -0.538 4.538 5 H 0.027 0.973 6 C 0.010 3.990 7 N -0.946 5.946 8 Si 0.949 3.051 9 H -0.250 1.250 10 H -0.282 1.282 11 H -0.256 1.256 12 C 0.499 3.501 13 O -0.594 6.594 14 C -0.156 4.156 15 C 0.082 3.918 16 N -0.540 5.540 17 C 0.048 3.952 18 C -0.142 4.142 19 C 0.113 3.887 20 H 0.064 0.936 21 O -0.578 6.578 22 C -0.064 4.064 23 H 0.065 0.935 24 C -0.075 4.075 25 C -0.120 4.120 26 C -0.123 4.123 27 C -0.129 4.129 28 C -0.125 4.125 29 C 0.056 3.944 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.049 0.951 34 H 0.019 0.981 35 H 0.269 0.731 36 H 0.103 0.897 37 H 0.118 0.882 38 H 0.075 0.925 39 H 0.059 0.941 40 H 0.049 0.951 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.065 0.935 44 H 0.392 0.608 45 H 0.074 0.926 46 H 0.068 0.932 47 H 0.070 0.930 48 H 0.071 0.929 49 H 0.066 0.934 50 H 0.065 0.935 51 H 0.054 0.946 52 H 0.064 0.936 53 H 0.058 0.942 54 H 0.070 0.930 55 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.184 -21.864 -8.557 28.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.340 5.340 3 C 0.100 3.900 4 C -0.576 4.576 5 H 0.045 0.955 6 C -0.188 4.188 7 N -0.586 5.586 8 Si 0.772 3.228 9 H -0.174 1.174 10 H -0.208 1.208 11 H -0.180 1.180 12 C 0.287 3.713 13 O -0.476 6.476 14 C -0.198 4.198 15 C -0.047 4.047 16 N -0.263 5.263 17 C -0.079 4.079 18 C -0.180 4.180 19 C 0.054 3.946 20 H 0.082 0.918 21 O -0.386 6.386 22 C -0.083 4.083 23 H 0.083 0.917 24 C -0.094 4.094 25 C -0.158 4.158 26 C -0.161 4.161 27 C -0.166 4.166 28 C -0.163 4.163 29 C -0.071 4.071 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.037 0.963 35 H 0.078 0.922 36 H 0.121 0.879 37 H 0.136 0.864 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.098 0.902 42 H 0.111 0.889 43 H 0.083 0.917 44 H 0.242 0.758 45 H 0.093 0.907 46 H 0.087 0.913 47 H 0.089 0.911 48 H 0.089 0.911 49 H 0.085 0.915 50 H 0.083 0.917 51 H 0.073 0.927 52 H 0.083 0.917 53 H 0.077 0.923 54 H 0.088 0.912 55 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.866 -22.138 -7.855 27.799 hybrid contribution 0.062 1.552 -0.304 1.582 sum -14.804 -20.586 -8.159 26.637 Atomic orbital electron populations 1.21954 0.77692 1.03846 1.02937 1.48008 1.08420 1.06064 1.71521 1.19324 0.92754 0.82659 0.95256 1.21564 1.36755 1.06899 0.92401 0.95466 1.25878 0.95267 0.98977 0.98679 1.70054 1.42622 1.24567 1.21315 0.85686 0.78809 0.78973 0.79345 1.17402 1.20777 1.17976 1.21275 0.87812 0.86522 0.75647 1.90643 1.16509 1.88147 1.52265 1.22301 1.00530 0.91367 1.05560 1.21767 0.94921 0.85033 1.02991 1.62217 1.28995 1.31711 1.03331 1.22185 0.96948 0.96984 0.91804 1.22292 0.99668 0.96849 0.99236 1.21809 0.94244 0.84446 0.94052 0.91835 1.86485 1.72719 1.32283 1.47089 1.21081 0.96826 0.96271 0.94091 0.91665 1.21636 0.95099 0.99574 0.93067 1.22523 0.98318 0.98026 0.96890 1.22487 0.96326 1.01318 0.95963 1.22372 0.96477 0.97728 1.00036 1.22278 0.99397 0.98044 0.96555 1.22278 0.94898 0.96528 0.93404 0.90089 0.89562 0.91637 0.93353 0.96251 0.92243 0.87938 0.86368 0.90650 0.92233 0.93247 0.90175 0.88925 0.91670 0.75836 0.90749 0.91322 0.91106 0.91074 0.91520 0.91661 0.92746 0.91686 0.92304 0.91194 0.92986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.12 10.24 127.77 1.31 3.43 16 2 N -0.61 -24.31 2.86 -851.13 -2.43 -26.74 16 3 C 0.22 10.87 4.23 85.63 0.36 11.23 16 4 C -0.54 -31.88 9.94 25.60 0.25 -31.63 16 5 H 0.03 1.80 8.06 -2.91 -0.02 1.78 16 6 C 0.01 0.59 5.47 84.65 0.46 1.05 16 7 N -0.95 -60.14 13.96 21.45 0.30 -59.84 16 8 Si 0.95 44.56 27.47 68.60 1.88 46.45 16 9 H -0.25 -10.67 7.11 99.48 0.71 -9.97 16 10 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 11 H -0.26 -11.59 6.53 99.48 0.65 -10.94 16 12 C 0.50 19.76 7.67 87.66 0.67 20.43 16 13 O -0.59 -29.71 15.56 -3.04 -0.05 -29.76 16 14 C -0.16 -4.07 3.55 29.85 0.11 -3.96 16 15 C 0.08 2.19 4.65 86.30 0.40 2.60 16 16 N -0.54 -11.49 4.86 -896.38 -4.35 -15.85 16 17 C 0.05 0.78 5.05 86.33 0.44 1.21 16 18 C -0.14 -1.89 5.72 30.65 0.18 -1.71 16 19 C 0.11 1.58 2.76 30.67 0.08 1.67 16 20 H 0.06 0.78 7.11 -2.38 -0.02 0.77 16 21 O -0.58 -8.06 12.79 -148.98 -1.91 -9.96 16 22 C -0.06 -1.13 1.80 -10.74 -0.02 -1.14 16 23 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 24 C -0.07 -1.25 2.66 -10.07 -0.03 -1.27 16 25 C -0.12 -1.78 5.06 31.67 0.16 -1.62 16 26 C -0.12 -1.92 6.91 31.88 0.22 -1.70 16 27 C -0.13 -2.31 6.83 31.67 0.22 -2.10 16 28 C -0.13 -2.24 5.92 31.32 0.19 -2.05 16 29 C 0.06 1.10 3.58 86.33 0.31 1.41 16 30 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.09 1.85 6.44 -2.39 -0.02 1.84 16 32 H 0.06 1.94 8.07 -2.39 -0.02 1.92 16 33 H 0.05 2.13 7.51 -2.39 -0.02 2.11 16 34 H 0.02 1.03 6.46 -2.39 -0.02 1.02 16 35 H 0.27 15.85 8.31 -92.70 -0.77 15.08 16 36 H 0.10 2.44 5.76 -2.39 -0.01 2.42 16 37 H 0.12 2.31 6.65 -2.39 -0.02 2.30 16 38 H 0.08 2.15 8.02 -2.39 -0.02 2.13 16 39 H 0.06 1.92 8.10 -2.39 -0.02 1.90 16 40 H 0.05 0.68 6.76 -2.38 -0.02 0.67 16 41 H 0.08 1.29 8.06 -2.39 -0.02 1.27 16 42 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 44 H 0.39 2.15 9.08 -74.06 -0.67 1.47 16 45 H 0.07 1.34 7.79 -2.38 -0.02 1.32 16 46 H 0.07 1.02 5.49 -2.39 -0.01 1.01 16 47 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 49 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 50 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 51 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 52 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 53 H 0.06 1.17 6.24 -2.39 -0.01 1.15 16 54 H 0.07 1.59 6.40 -2.39 -0.02 1.58 16 55 H 0.05 0.94 4.45 -2.39 -0.01 0.93 16 Total: -1.00 -78.36 406.47 -1.10 -79.47 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: 0.14 Total: 20.39 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: 5.31 Total: -4.16 kcal Atomic # 7 Polarization: -95.95 SS G_CDS: -6.49 Total: -102.43 kcal Atomic # 8 Polarization: -37.76 SS G_CDS: -1.95 Total: -39.72 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.88 Total: 46.45 kcal Total: -78.36 -1.10 -79.47 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584396435.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.684 kcal (2) G-P(sol) polarization free energy of solvation -78.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds