Wall clock time and date at job start Tue Mar 31 2020 22:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46892 * 111.00407 * 2 1 4 4 C 1.46903 * 110.99948 * 123.95346 * 2 1 3 5 5 H 1.09001 * 109.29536 * 54.73800 * 4 2 1 6 6 C 1.52883 * 109.38358 * 294.99801 * 4 2 1 7 7 C 1.53204 * 109.98338 * 181.10908 * 6 4 2 8 8 C 1.52717 * 108.97565 * 59.39384 * 7 6 4 9 9 H 1.09003 * 109.56818 * 58.62630 * 8 7 6 10 10 C 1.53337 * 108.91703 * 298.90114 * 8 7 6 11 11 H 1.09000 * 108.72234 * 303.37267 * 10 8 7 12 12 C 1.52688 * 109.06584 * 62.48679 * 10 8 7 13 13 O 1.42574 * 108.98501 * 184.30894 * 10 8 7 14 14 C 1.43180 * 113.51655 * 63.44702 * 13 10 8 15 15 C 1.53171 * 109.83349 * 298.47742 * 14 13 10 16 16 N 1.46599 * 111.03458 * 179.97438 * 8 7 6 17 17 C 1.34775 * 121.33947 * 351.43584 * 16 8 7 18 18 O 1.21285 * 119.99764 * 354.63641 * 17 16 8 19 19 C 1.50701 * 120.00080 * 174.64727 * 17 16 8 20 20 C 1.53000 * 109.47045 * 179.97438 * 19 17 16 21 21 C 1.53000 * 109.47011 * 179.97438 * 20 19 17 22 22 C 1.53000 * 109.47011 * 179.97438 * 21 20 19 23 23 C 1.50701 * 109.47045 * 180.02562 * 22 21 20 24 24 H 1.08006 * 119.99920 * 359.97438 * 23 22 21 25 25 C 1.37872 * 120.00052 * 179.97438 * 23 22 21 26 26 N 1.31510 * 120.00150 * 0.02562 * 25 23 22 27 27 Si 1.86804 * 119.99758 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.46994 * 60.00380 * 27 25 23 29 29 H 1.48509 * 109.46938 * 180.02562 * 27 25 23 30 30 H 1.48494 * 109.47360 * 299.99909 * 27 25 23 31 31 H 1.08998 * 109.46491 * 296.04573 * 1 2 3 32 32 H 1.08995 * 109.46627 * 56.04534 * 1 2 3 33 33 H 1.08999 * 109.47246 * 176.05104 * 1 2 3 34 34 H 1.08993 * 109.47815 * 183.95533 * 3 2 1 35 35 H 1.09005 * 109.47027 * 303.95409 * 3 2 1 36 36 H 1.08998 * 109.47041 * 63.94924 * 3 2 1 37 37 H 1.08998 * 109.38889 * 60.95272 * 6 4 2 38 38 H 1.08992 * 109.30276 * 301.21004 * 6 4 2 39 39 H 1.09004 * 109.56609 * 179.27543 * 7 6 4 40 40 H 1.09008 * 109.56928 * 299.51537 * 7 6 4 41 41 H 1.09002 * 109.57168 * 178.99320 * 12 10 8 42 42 H 1.09006 * 109.66334 * 58.70071 * 12 10 8 43 43 H 1.09006 * 109.40901 * 58.58747 * 14 13 10 44 44 H 1.08998 * 109.40828 * 178.43646 * 14 13 10 45 45 H 1.08998 * 109.57298 * 170.83752 * 15 14 13 46 46 H 1.09010 * 109.56935 * 291.07571 * 15 14 13 47 47 H 1.09003 * 109.46681 * 299.99899 * 19 17 16 48 48 H 1.08996 * 109.47019 * 59.99253 * 19 17 16 49 49 H 1.08999 * 109.46914 * 299.99882 * 20 19 17 50 50 H 1.09000 * 109.47063 * 60.00130 * 20 19 17 51 51 H 1.08994 * 109.47174 * 300.00288 * 21 20 19 52 52 H 1.09000 * 109.46914 * 60.00268 * 21 20 19 53 53 H 1.09007 * 109.47137 * 299.99894 * 22 21 20 54 54 H 1.08990 * 109.47235 * 59.99848 * 22 21 20 55 55 H 0.97006 * 120.00201 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9956 1.3713 0.0000 4 6 1.9955 -0.7660 1.1376 5 1 1.5701 -1.7695 1.1239 6 6 1.6084 -0.0683 2.4417 7 6 2.1745 -0.8414 3.6371 8 6 3.6951 -0.9057 3.5118 9 1 4.1017 0.1051 3.4771 10 6 4.0565 -1.6468 2.2190 11 1 3.5909 -2.6321 2.2387 12 6 3.5206 -0.8588 1.0260 13 8 5.4728 -1.7959 2.1502 14 6 6.0139 -2.6030 3.2018 15 6 5.7228 -1.9531 4.5579 16 7 4.2853 -1.6377 4.6366 17 6 3.5429 -2.0085 5.6985 18 8 2.3860 -1.6542 5.7830 19 6 4.1501 -2.8632 6.7810 20 6 3.1026 -3.1378 7.8618 21 6 3.7190 -4.0061 8.9605 22 6 2.6716 -4.2802 10.0416 23 6 3.2789 -5.1349 11.1241 24 1 4.3088 -5.4513 11.0483 25 6 2.5198 -5.5129 12.2112 26 7 1.2657 -5.1281 12.3032 27 14 3.2725 -6.5730 13.5526 28 1 4.4305 -5.8632 14.1530 29 1 2.2559 -6.8390 14.6021 30 1 3.7290 -7.8598 12.9689 31 1 -0.3632 0.4512 0.9233 32 1 -0.3632 0.5740 -0.8524 33 1 -0.3634 -1.0252 -0.0708 34 1 3.0828 1.3432 -0.0709 35 1 1.5899 1.9163 -0.8525 36 1 1.7045 1.8723 0.9232 37 1 0.5221 -0.0252 2.5204 38 1 2.0116 0.9443 2.4421 39 1 1.9055 -0.3314 4.5622 40 1 1.7657 -1.8519 3.6452 41 1 3.7885 -1.3695 0.1010 42 1 3.9484 0.1438 1.0266 43 1 5.5590 -3.5930 3.1694 44 1 7.0919 -2.6952 3.0694 45 1 5.9894 -2.6433 5.3584 46 1 6.3056 -1.0371 4.6565 47 1 4.4868 -3.8072 6.3525 48 1 4.9991 -2.3414 7.2225 49 1 2.7664 -2.1936 8.2901 50 1 2.2534 -3.6596 7.4205 51 1 4.0550 -4.9502 8.5318 52 1 4.5684 -3.4848 9.4019 53 1 2.3361 -3.3358 10.4702 54 1 1.8220 -4.8012 9.6005 55 1 0.7315 -5.3944 13.0679 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588653472.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:19 Heat of formation + Delta-G solvation = -102.726814 kcal Electronic energy + Delta-G solvation = -30695.838468 eV Core-core repulsion = 26731.566213 eV Total energy + Delta-G solvation = -3964.272255 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.11946 -40.15781 -39.13478 -36.78160 -36.01263 -35.66590 -34.57050 -31.86494 -31.37327 -30.75218 -28.88006 -28.50674 -27.27629 -25.48107 -24.63933 -23.91037 -23.30481 -22.32754 -21.66002 -20.60564 -20.03815 -18.42994 -18.10255 -17.63552 -17.18946 -17.07580 -16.62250 -16.50240 -16.30720 -16.06047 -15.78667 -15.48613 -15.23314 -15.00563 -14.80109 -14.63708 -14.47714 -14.36543 -13.71807 -13.65545 -13.48174 -13.29002 -13.19990 -12.98071 -12.82908 -12.78927 -12.68753 -12.39899 -12.32529 -12.25635 -12.20867 -12.16358 -12.13254 -11.89427 -11.64241 -11.47592 -11.39083 -11.33115 -11.20096 -11.08587 -10.55015 -10.20393 -9.55987 -9.21135 -8.19048 -6.31352 1.39907 1.43929 1.51739 1.56685 1.80890 2.41459 2.47788 3.11826 3.13499 3.39269 3.51454 3.76958 3.83978 3.84236 3.95946 4.01162 4.05335 4.10754 4.13940 4.19368 4.26446 4.30373 4.34190 4.37506 4.45905 4.55109 4.60038 4.65098 4.66513 4.69909 4.78466 4.80156 4.81063 4.84727 4.89683 4.92120 4.97881 5.02031 5.08556 5.13560 5.16993 5.24642 5.25570 5.32138 5.36104 5.52730 5.55867 5.77127 5.87248 6.00984 6.07488 6.11408 6.24529 6.30843 6.86932 7.14553 7.38231 8.92898 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019649 B = 0.002018 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.686490 B =13869.219158 C =14952.203167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.545 5.545 3 C 0.013 3.987 4 C 0.092 3.908 5 H 0.077 0.923 6 C -0.150 4.150 7 C -0.097 4.097 8 C 0.118 3.882 9 H 0.078 0.922 10 C 0.090 3.910 11 H 0.052 0.948 12 C -0.090 4.090 13 O -0.383 6.383 14 C 0.044 3.956 15 C 0.066 3.934 16 N -0.618 5.618 17 C 0.513 3.487 18 O -0.568 6.568 19 C -0.128 4.128 20 C -0.093 4.093 21 C -0.095 4.095 22 C 0.019 3.981 23 C -0.542 4.542 24 H 0.067 0.933 25 C -0.008 4.008 26 N -0.938 5.938 27 Si 0.970 3.030 28 H -0.264 1.264 29 H -0.286 1.286 30 H -0.264 1.264 31 H 0.028 0.972 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.030 0.970 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.047 0.953 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.058 0.942 44 H 0.137 0.863 45 H 0.119 0.881 46 H 0.090 0.910 47 H 0.116 0.884 48 H 0.117 0.883 49 H 0.042 0.958 50 H 0.042 0.958 51 H 0.061 0.939 52 H 0.061 0.939 53 H -0.016 1.016 54 H -0.016 1.016 55 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.755 11.269 -28.600 32.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.268 5.268 3 C -0.135 4.135 4 C -0.017 4.017 5 H 0.095 0.905 6 C -0.189 4.189 7 C -0.136 4.136 8 C 0.015 3.985 9 H 0.096 0.904 10 C 0.031 3.969 11 H 0.070 0.930 12 C -0.128 4.128 13 O -0.302 6.302 14 C -0.033 4.033 15 C -0.056 4.056 16 N -0.352 5.352 17 C 0.304 3.696 18 O -0.447 6.447 19 C -0.168 4.168 20 C -0.131 4.131 21 C -0.133 4.133 22 C -0.018 4.018 23 C -0.580 4.580 24 H 0.085 0.915 25 C -0.205 4.205 26 N -0.578 5.578 27 Si 0.794 3.206 28 H -0.189 1.189 29 H -0.211 1.211 30 H -0.189 1.189 31 H 0.046 0.954 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.048 0.952 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.066 0.934 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.076 0.924 44 H 0.155 0.845 45 H 0.137 0.863 46 H 0.108 0.892 47 H 0.134 0.866 48 H 0.135 0.865 49 H 0.061 0.939 50 H 0.061 0.939 51 H 0.079 0.921 52 H 0.080 0.920 53 H 0.002 0.998 54 H 0.002 0.998 55 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.269 11.301 -29.044 32.514 hybrid contribution -0.867 -0.182 2.056 2.239 sum 8.402 11.118 -26.988 30.374 Atomic orbital electron populations 1.22461 0.86752 1.02625 1.01058 1.62258 1.08538 1.14692 1.41275 1.22553 1.01443 0.88433 1.01026 1.21605 0.94512 0.97719 0.87892 0.90515 1.22307 1.01208 1.00323 0.95074 1.21695 0.92732 1.00717 0.98414 1.21838 0.94798 0.95800 0.86088 0.90397 1.22235 0.82147 0.98310 0.94240 0.93030 1.21368 0.93579 1.01135 0.96745 1.87922 1.20263 1.72051 1.49936 1.23210 1.01614 0.93209 0.85216 1.22770 0.79306 1.03094 1.00417 1.48272 1.10935 1.56981 1.18973 1.21207 0.85866 0.79806 0.82731 1.90697 1.19324 1.56533 1.78143 1.21729 1.00065 1.00965 0.94019 1.21223 0.97479 0.99215 0.95188 1.21441 0.98171 0.98790 0.94853 1.19046 0.94441 0.94521 0.93777 1.21725 0.98368 1.31922 1.05967 0.91519 1.26105 0.95299 0.97854 1.01243 1.70126 1.09042 1.47314 1.31328 0.85434 0.78089 0.79160 0.77953 1.18885 1.21131 1.18893 0.95390 0.90204 0.91385 0.90572 0.90516 0.95180 0.91608 0.90949 0.90805 0.93407 0.89658 0.90139 0.92407 0.84536 0.86264 0.89192 0.86593 0.86534 0.93886 0.93922 0.92060 0.92049 0.99790 0.99792 0.92870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.30 127.69 1.19 1.44 16 2 N -0.55 -7.97 5.00 -923.13 -4.62 -12.58 16 3 C 0.01 0.16 8.83 127.69 1.13 1.29 16 4 C 0.09 1.46 2.22 44.94 0.10 1.56 16 5 H 0.08 1.35 8.13 -2.39 -0.02 1.33 16 6 C -0.15 -2.70 4.51 30.62 0.14 -2.56 16 7 C -0.10 -2.29 3.73 30.57 0.11 -2.18 16 8 C 0.12 2.40 2.82 44.99 0.13 2.53 16 9 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 10 C 0.09 1.58 2.49 30.60 0.08 1.66 16 11 H 0.05 1.01 8.13 -2.39 -0.02 0.99 16 12 C -0.09 -1.36 4.79 30.56 0.15 -1.22 16 13 O -0.38 -6.44 10.51 -148.98 -1.57 -8.00 16 14 C 0.04 0.51 6.95 72.04 0.50 1.02 16 15 C 0.07 0.83 6.54 86.27 0.56 1.40 16 16 N -0.62 -12.75 3.01 -794.92 -2.39 -15.14 16 17 C 0.51 13.93 7.59 87.66 0.67 14.60 16 18 O -0.57 -20.08 11.94 -3.04 -0.04 -20.12 16 19 C -0.13 -3.13 4.08 29.85 0.12 -3.00 16 20 C -0.09 -3.31 4.50 30.59 0.14 -3.17 16 21 C -0.10 -3.84 5.15 30.59 0.16 -3.68 16 22 C 0.02 1.06 4.97 29.85 0.15 1.20 16 23 C -0.54 -31.34 9.11 25.60 0.23 -31.11 16 24 H 0.07 3.60 7.74 -2.91 -0.02 3.57 16 25 C -0.01 -0.46 5.46 84.65 0.46 0.00 16 26 N -0.94 -59.08 13.29 21.44 0.28 -58.80 16 27 Si 0.97 44.69 29.54 68.60 2.03 46.72 16 28 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 29 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 30 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 31 H 0.03 0.38 6.45 -2.39 -0.02 0.37 16 32 H 0.08 0.85 8.12 -2.39 -0.02 0.83 16 33 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.08 0.84 6.32 -2.39 -0.02 0.83 16 35 H 0.08 0.76 8.12 -2.38 -0.02 0.74 16 36 H 0.03 0.37 6.25 -2.39 -0.01 0.36 16 37 H 0.07 1.25 6.55 -2.39 -0.02 1.23 16 38 H 0.07 1.22 6.30 -2.39 -0.02 1.21 16 39 H 0.07 2.20 6.15 -2.38 -0.01 2.19 16 40 H 0.05 1.32 7.60 -2.38 -0.02 1.30 16 41 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.08 1.14 6.42 -2.38 -0.02 1.13 16 43 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 44 H 0.14 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.12 1.07 6.10 -2.39 -0.01 1.06 16 46 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 47 H 0.12 2.25 7.88 -2.39 -0.02 2.23 16 48 H 0.12 2.25 7.83 -2.39 -0.02 2.23 16 49 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 50 H 0.04 1.67 8.10 -2.39 -0.02 1.65 16 51 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 52 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 53 H -0.02 -0.98 8.14 -2.38 -0.02 -1.00 16 54 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 55 H 0.26 15.54 8.31 -92.70 -0.77 14.77 16 Total: -1.00 -74.32 407.65 0.55 -73.77 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: 0.84 Total: 14.39 kcal Atomic # 6 Polarization: -26.25 SS G_CDS: 6.01 Total: -20.24 kcal Atomic # 7 Polarization: -79.80 SS G_CDS: -6.73 Total: -86.52 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -1.60 Total: -28.12 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -74.32 0.55 -73.77 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588653472.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.952 kcal (2) G-P(sol) polarization free energy of solvation -74.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds