Wall clock time and date at job start Tue Mar 31 2020 22:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46888 * 1 3 3 C 1.46908 * 111.00027 * 2 1 4 4 C 1.46900 * 111.00206 * 123.95421 * 2 1 3 5 5 H 1.08998 * 109.52297 * 55.11837 * 4 2 1 6 6 C 1.53062 * 109.52023 * 294.99994 * 4 2 1 7 7 C 1.52902 * 109.28543 * 179.36977 * 6 4 2 8 8 C 1.53094 * 109.78156 * 60.61533 * 7 6 4 9 9 H 1.09002 * 110.15437 * 62.40672 * 8 7 6 10 10 C 1.53136 * 109.58786 * 301.05983 * 8 7 6 11 11 H 1.08999 * 109.00124 * 176.24466 * 10 8 7 12 12 C 1.50080 * 109.93628 * 175.10920 * 4 2 1 13 13 O 1.42725 * 109.40670 * 295.34260 * 10 8 7 14 14 C 1.43060 * 113.93610 * 296.87439 * 13 10 8 15 15 C 1.53250 * 109.40544 * 61.77820 * 14 13 10 16 16 N 1.47171 * 108.63113 * 308.24684 * 15 14 13 17 17 C 1.34773 * 121.18514 * 230.86984 * 16 15 14 18 18 O 1.21284 * 119.99975 * 180.02562 * 17 16 15 19 19 C 1.50698 * 120.00393 * 0.02562 * 17 16 15 20 20 C 1.52995 * 109.47684 * 179.97438 * 19 17 16 21 21 C 1.52999 * 109.47205 * 180.02562 * 20 19 17 22 22 C 1.53002 * 109.46932 * 179.97438 * 21 20 19 23 23 C 1.50702 * 109.47076 * 179.97438 * 22 21 20 24 24 H 1.07993 * 119.99613 * 0.02562 * 23 22 21 25 25 C 1.37875 * 119.99913 * 179.97438 * 23 22 21 26 26 N 1.31511 * 119.99973 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 120.00056 * 179.97438 * 25 23 22 28 28 H 1.48506 * 109.46703 * 60.00378 * 27 25 23 29 29 H 1.48498 * 109.47431 * 180.02562 * 27 25 23 30 30 H 1.48498 * 109.47126 * 300.00545 * 27 25 23 31 31 H 1.09007 * 109.47309 * 296.04359 * 1 2 3 32 32 H 1.09003 * 109.47589 * 56.04294 * 1 2 3 33 33 H 1.09004 * 109.47391 * 176.04839 * 1 2 3 34 34 H 1.09006 * 109.47095 * 183.95229 * 3 2 1 35 35 H 1.08996 * 109.46781 * 303.95759 * 3 2 1 36 36 H 1.09001 * 109.46721 * 63.95559 * 3 2 1 37 37 H 1.08997 * 109.49908 * 59.42524 * 6 4 2 38 38 H 1.09005 * 109.50605 * 299.31440 * 6 4 2 39 39 H 1.08995 * 109.42291 * 300.51683 * 7 6 4 40 40 H 1.09001 * 109.36544 * 180.67291 * 7 6 4 41 41 H 1.09000 * 108.31088 * 59.06898 * 12 4 2 42 42 H 1.08997 * 108.89082 * 300.28278 * 12 4 2 43 43 H 1.08997 * 109.48220 * 181.75599 * 14 13 10 44 44 H 1.08995 * 109.47970 * 301.80014 * 14 13 10 45 45 H 1.08998 * 109.61116 * 188.50694 * 15 14 13 46 46 H 1.08992 * 109.61119 * 67.99075 * 15 14 13 47 47 H 1.09001 * 109.46788 * 300.00267 * 19 17 16 48 48 H 1.09002 * 109.46881 * 59.99664 * 19 17 16 49 49 H 1.09001 * 109.46945 * 300.00438 * 20 19 17 50 50 H 1.09002 * 109.47122 * 59.99951 * 20 19 17 51 51 H 1.08995 * 109.46619 * 299.99693 * 21 20 19 52 52 H 1.08997 * 109.47228 * 60.00236 * 21 20 19 53 53 H 1.09001 * 109.47112 * 300.00039 * 22 21 20 54 54 H 1.09002 * 109.47228 * 59.99719 * 22 21 20 55 55 H 0.97003 * 119.99960 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 1.5774 -1.7726 1.1236 6 6 1.6095 -0.0702 2.4451 7 6 2.1465 -0.8800 3.6257 8 6 3.6726 -0.9680 3.5422 9 1 4.1106 0.0276 3.6129 10 6 4.0772 -1.6300 2.2219 11 1 5.1643 -1.6274 2.1421 12 6 3.4911 -0.8512 1.0488 13 8 3.6135 -2.9797 2.2065 14 6 4.1941 -3.8045 3.2209 15 6 3.8238 -3.2509 4.6011 16 7 4.1657 -1.8200 4.6409 17 6 4.9025 -1.3062 5.6457 18 8 5.1712 -0.1236 5.6572 19 6 5.3925 -2.2011 6.7548 20 6 6.1986 -1.3746 7.7586 21 6 6.6966 -2.2833 8.8842 22 6 7.5033 -1.4568 9.8877 23 6 7.9933 -2.3518 10.9968 24 1 7.7536 -3.4047 10.9867 25 6 8.7484 -1.8264 12.0239 26 7 9.0406 -0.5443 12.0359 27 14 9.3551 -2.9356 13.3990 28 1 10.2165 -4.0032 12.8302 29 1 10.1382 -2.1335 14.3730 30 1 8.1925 -3.5518 14.0873 31 1 -0.3634 0.4512 0.9234 32 1 -0.3634 0.5740 -0.8524 33 1 -0.3634 -1.0252 -0.0708 34 1 3.0827 1.3433 -0.0708 35 1 1.5896 1.9163 -0.8524 36 1 1.7043 1.8723 0.9233 37 1 0.5239 -0.0020 2.5144 38 1 2.0395 0.9313 2.4652 39 1 1.7236 -1.8842 3.5987 40 1 1.8621 -0.3920 4.5579 41 1 3.8926 0.1622 1.0504 42 1 3.7617 -1.3447 0.1153 43 1 3.8148 -4.8217 3.1236 44 1 5.2784 -3.8084 3.1098 45 1 4.3837 -3.7823 5.3707 46 1 2.7545 -3.3764 4.7707 47 1 4.5393 -2.6548 7.2592 48 1 6.0259 -2.9836 6.3371 49 1 7.0517 -0.9211 7.2539 50 1 5.5655 -0.5917 8.1763 51 1 5.8437 -2.7369 9.3890 52 1 7.3299 -3.0658 8.4663 53 1 8.3562 -1.0034 9.3826 54 1 6.8704 -0.6740 10.3058 55 1 9.5722 -0.1747 12.7583 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588653473.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:23 Heat of formation + Delta-G solvation = -113.032136 kcal Electronic energy + Delta-G solvation = -30564.937744 eV Core-core repulsion = 26600.218617 eV Total energy + Delta-G solvation = -3964.719127 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.06059 -40.32689 -38.96276 -36.70577 -36.08187 -35.46431 -34.58199 -31.87606 -31.59361 -30.69293 -29.01914 -28.46350 -27.33832 -25.45516 -24.39981 -24.09643 -23.73297 -22.09286 -21.63765 -20.27268 -19.81716 -18.45768 -18.19730 -17.65435 -17.27823 -17.08042 -16.87552 -16.52580 -16.29344 -15.99578 -15.73463 -15.44081 -15.22421 -14.98190 -14.70240 -14.55534 -14.43787 -14.14273 -13.74480 -13.66235 -13.60454 -13.27282 -13.22934 -12.92052 -12.88858 -12.83271 -12.78931 -12.58672 -12.37787 -12.22084 -12.16835 -12.15561 -12.02011 -11.83306 -11.57122 -11.40420 -11.39284 -11.31429 -11.14906 -11.05515 -10.69768 -10.54853 -9.58624 -9.20228 -8.18832 -6.31265 1.40148 1.44219 1.52069 1.54182 1.77360 2.41708 2.68006 2.99278 3.13742 3.42831 3.54258 3.68348 3.80360 3.92755 3.97953 3.99839 4.06161 4.08849 4.18834 4.24983 4.29506 4.30520 4.39835 4.41123 4.52621 4.54533 4.63219 4.64451 4.65469 4.68486 4.77221 4.78060 4.81955 4.84322 4.90089 4.96801 4.99055 5.02280 5.07632 5.09359 5.15697 5.23862 5.28771 5.30613 5.34991 5.42494 5.55486 5.76759 5.87123 6.09982 6.10775 6.14561 6.24371 6.27939 6.86975 7.08649 7.38371 8.93143 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.028289 B = 0.001839 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.535484 B =15224.673996 C =15719.203302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.548 5.548 3 C 0.013 3.987 4 C 0.096 3.904 5 H 0.087 0.913 6 C -0.144 4.144 7 C -0.107 4.107 8 C 0.111 3.889 9 H 0.081 0.919 10 C 0.098 3.902 11 H 0.055 0.945 12 C -0.099 4.099 13 O -0.376 6.376 14 C 0.045 3.955 15 C 0.064 3.936 16 N -0.615 5.615 17 C 0.513 3.487 18 O -0.586 6.586 19 C -0.126 4.126 20 C -0.095 4.095 21 C -0.094 4.094 22 C 0.018 3.982 23 C -0.543 4.543 24 H 0.067 0.933 25 C -0.007 4.007 26 N -0.938 5.938 27 Si 0.970 3.030 28 H -0.264 1.264 29 H -0.286 1.286 30 H -0.264 1.264 31 H 0.030 0.970 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.029 0.971 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.079 0.921 40 H 0.050 0.950 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.136 0.864 44 H 0.056 0.944 45 H 0.118 0.882 46 H 0.090 0.910 47 H 0.118 0.882 48 H 0.120 0.880 49 H 0.042 0.958 50 H 0.041 0.959 51 H 0.062 0.938 52 H 0.062 0.938 53 H -0.016 1.016 54 H -0.017 1.017 55 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.161 -6.325 -27.788 34.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.271 5.271 3 C -0.135 4.135 4 C -0.012 4.012 5 H 0.105 0.895 6 C -0.183 4.183 7 C -0.146 4.146 8 C 0.007 3.993 9 H 0.099 0.901 10 C 0.038 3.962 11 H 0.073 0.927 12 C -0.137 4.137 13 O -0.295 6.295 14 C -0.032 4.032 15 C -0.058 4.058 16 N -0.348 5.348 17 C 0.304 3.696 18 O -0.466 6.466 19 C -0.165 4.165 20 C -0.133 4.133 21 C -0.132 4.132 22 C -0.019 4.019 23 C -0.580 4.580 24 H 0.085 0.915 25 C -0.205 4.205 26 N -0.578 5.578 27 Si 0.794 3.206 28 H -0.189 1.189 29 H -0.211 1.211 30 H -0.189 1.189 31 H 0.048 0.952 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.047 0.953 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.098 0.902 40 H 0.069 0.931 41 H 0.099 0.901 42 H 0.103 0.897 43 H 0.154 0.846 44 H 0.074 0.926 45 H 0.136 0.864 46 H 0.108 0.892 47 H 0.136 0.864 48 H 0.138 0.862 49 H 0.060 0.940 50 H 0.059 0.941 51 H 0.080 0.920 52 H 0.081 0.919 53 H 0.002 0.998 54 H 0.002 0.998 55 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.915 -5.880 -28.272 34.520 hybrid contribution 0.569 0.838 2.009 2.250 sum -18.345 -5.042 -26.263 32.430 Atomic orbital electron populations 1.22441 0.86592 1.02724 1.00952 1.62273 1.08773 1.14265 1.41766 1.22535 1.01210 0.88844 1.00951 1.21002 0.94961 0.97877 0.87401 0.89523 1.22145 1.01454 0.99485 0.95250 1.21566 0.93273 1.01571 0.98213 1.21945 0.95545 0.95165 0.86596 0.90112 1.22062 0.97560 0.83116 0.93446 0.92704 1.20924 0.95524 1.00019 0.97227 1.87932 1.67873 1.19930 1.53753 1.23195 0.98616 0.95756 0.85638 1.22769 1.03276 0.79341 1.00390 1.48503 1.52441 1.10443 1.23407 1.21287 0.76843 0.88444 0.83063 1.90683 1.58863 1.19043 1.78039 1.21705 1.02369 0.98487 0.93946 1.21244 0.98665 0.97778 0.95627 1.21438 0.99133 0.97670 0.94944 1.19058 0.93916 0.94962 0.93951 1.21725 1.32670 0.95834 1.07812 0.91459 1.26105 0.96451 0.96589 1.01310 1.70129 1.39647 1.14026 1.34003 0.85428 0.78626 0.78445 0.78093 1.18856 1.21132 1.18905 0.95185 0.90666 0.91017 0.91043 0.90635 0.95270 0.90704 0.92021 0.90192 0.93091 0.90118 0.89728 0.84599 0.92555 0.86411 0.89164 0.86359 0.86229 0.93959 0.94051 0.91978 0.91900 0.99764 0.99822 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.31 127.69 1.19 1.41 16 2 N -0.55 -7.32 5.01 -928.76 -4.65 -11.97 16 3 C 0.01 0.15 8.79 127.69 1.12 1.27 16 4 C 0.10 1.34 2.09 44.00 0.09 1.43 16 5 H 0.09 1.33 7.86 -2.39 -0.02 1.31 16 6 C -0.14 -2.10 4.49 30.58 0.14 -1.96 16 7 C -0.11 -1.84 5.16 30.59 0.16 -1.69 16 8 C 0.11 2.24 2.68 44.87 0.12 2.36 16 9 H 0.08 2.08 7.13 -2.39 -0.02 2.07 16 10 C 0.10 1.65 2.80 30.48 0.09 1.74 16 11 H 0.05 1.02 8.13 -2.39 -0.02 1.00 16 12 C -0.10 -1.45 4.57 29.50 0.13 -1.31 16 13 O -0.38 -5.83 9.59 -148.98 -1.43 -7.26 16 14 C 0.04 0.49 6.98 72.07 0.50 1.00 16 15 C 0.06 0.79 6.06 86.33 0.52 1.31 16 16 N -0.61 -12.72 2.71 -792.82 -2.15 -14.86 16 17 C 0.51 14.47 7.72 87.66 0.68 15.15 16 18 O -0.59 -22.45 15.49 -3.04 -0.05 -22.50 16 19 C -0.13 -3.12 4.08 29.85 0.12 -3.00 16 20 C -0.09 -3.45 4.50 30.59 0.14 -3.31 16 21 C -0.09 -3.83 5.15 30.59 0.16 -3.67 16 22 C 0.02 1.01 4.97 29.85 0.15 1.15 16 23 C -0.54 -31.44 9.11 25.60 0.23 -31.20 16 24 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 25 C -0.01 -0.43 5.46 84.65 0.46 0.03 16 26 N -0.94 -59.18 13.29 21.45 0.28 -58.89 16 27 Si 0.97 44.72 29.54 68.60 2.03 46.75 16 28 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 29 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 30 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 31 H 0.03 0.32 6.43 -2.38 -0.02 0.30 16 32 H 0.07 0.68 8.12 -2.39 -0.02 0.66 16 33 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 34 H 0.07 0.85 6.33 -2.38 -0.02 0.83 16 35 H 0.07 0.76 8.12 -2.39 -0.02 0.75 16 36 H 0.03 0.36 6.30 -2.39 -0.02 0.35 16 37 H 0.07 1.01 6.50 -2.39 -0.02 0.99 16 38 H 0.06 0.99 6.43 -2.38 -0.02 0.98 16 39 H 0.08 1.26 6.86 -2.39 -0.02 1.24 16 40 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.08 1.16 6.28 -2.39 -0.01 1.14 16 42 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.12 1.05 6.07 -2.39 -0.01 1.04 16 46 H 0.09 0.94 7.42 -2.39 -0.02 0.93 16 47 H 0.12 2.32 8.02 -2.39 -0.02 2.31 16 48 H 0.12 2.30 7.67 -2.39 -0.02 2.28 16 49 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 50 H 0.04 1.66 8.10 -2.39 -0.02 1.64 16 51 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 52 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 53 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 54 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 55 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -76.05 410.07 0.89 -75.16 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 0.84 Total: 12.86 kcal Atomic # 6 Polarization: -25.30 SS G_CDS: 6.00 Total: -19.29 kcal Atomic # 7 Polarization: -79.21 SS G_CDS: -6.51 Total: -85.73 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -1.48 Total: -29.75 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -76.05 0.89 -75.16 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588653473.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.870 kcal (2) G-P(sol) polarization free energy of solvation -76.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds