Wall clock time and date at job start Tue Mar 31 2020 22:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46907 * 110.99558 * 2 1 4 4 C 1.46897 * 111.00203 * 123.95418 * 2 1 3 5 5 H 1.08994 * 109.29607 * 305.07609 * 4 2 1 6 6 C 1.52886 * 109.38193 * 185.34765 * 4 2 1 7 7 C 1.53197 * 109.99474 * 298.55147 * 6 4 2 8 8 C 1.52805 * 108.85575 * 300.33093 * 7 6 4 9 9 H 1.09005 * 110.24064 * 301.26623 * 8 7 6 10 10 C 1.53776 * 108.64320 * 61.52393 * 8 7 6 11 11 H 1.09000 * 108.95590 * 56.24893 * 10 8 7 12 12 C 1.52691 * 108.89333 * 297.10338 * 10 8 7 13 13 O 1.42553 * 108.92017 * 175.42502 * 10 8 7 14 14 C 1.43182 * 113.52961 * 296.32974 * 13 10 8 15 15 C 1.53179 * 109.82091 * 61.54107 * 14 13 10 16 16 N 1.46830 * 110.85802 * 179.76467 * 8 7 6 17 17 C 1.34786 * 121.36146 * 9.19215 * 16 8 7 18 18 O 1.21281 * 119.99836 * 354.31759 * 17 16 8 19 19 C 1.50696 * 119.99788 * 174.31929 * 17 16 8 20 20 C 1.53002 * 109.47007 * 180.02562 * 19 17 16 21 21 C 1.52997 * 109.47268 * 179.97438 * 20 19 17 22 22 C 1.53000 * 109.47365 * 180.02562 * 21 20 19 23 23 C 1.50696 * 109.47104 * 180.02562 * 22 21 20 24 24 H 1.07995 * 120.00360 * 359.97438 * 23 22 21 25 25 C 1.37883 * 119.99676 * 179.97438 * 23 22 21 26 26 N 1.31519 * 119.99466 * 179.97438 * 25 23 22 27 27 Si 1.86792 * 120.00180 * 0.02562 * 25 23 22 28 28 H 1.48500 * 109.47165 * 269.99892 * 27 25 23 29 29 H 1.48502 * 109.47230 * 149.99472 * 27 25 23 30 30 H 1.48500 * 109.47167 * 29.99730 * 27 25 23 31 31 H 1.08990 * 109.46993 * 296.03939 * 1 2 3 32 32 H 1.08998 * 109.47609 * 56.04828 * 1 2 3 33 33 H 1.09005 * 109.46477 * 176.04439 * 1 2 3 34 34 H 1.09000 * 109.46703 * 189.12316 * 3 2 1 35 35 H 1.08994 * 109.46950 * 309.12584 * 3 2 1 36 36 H 1.08999 * 109.47064 * 69.12752 * 3 2 1 37 37 H 1.09002 * 109.37973 * 58.71159 * 6 4 2 38 38 H 1.08995 * 109.38553 * 178.49105 * 6 4 2 39 39 H 1.08999 * 109.57115 * 60.36866 * 7 6 4 40 40 H 1.08998 * 109.56959 * 180.61675 * 7 6 4 41 41 H 1.09003 * 109.57331 * 181.20505 * 12 10 8 42 42 H 1.09001 * 109.56660 * 301.56338 * 12 10 8 43 43 H 1.08995 * 109.41683 * 301.42934 * 14 13 10 44 44 H 1.08996 * 109.35366 * 181.60822 * 14 13 10 45 45 H 1.09001 * 109.56860 * 189.14733 * 15 14 13 46 46 H 1.08993 * 109.67878 * 68.83400 * 15 14 13 47 47 H 1.09000 * 109.47614 * 59.99931 * 19 17 16 48 48 H 1.09005 * 109.46901 * 300.00050 * 19 17 16 49 49 H 1.09006 * 109.46807 * 59.99915 * 20 19 17 50 50 H 1.08995 * 109.47360 * 299.99902 * 20 19 17 51 51 H 1.09000 * 109.47327 * 59.99901 * 21 20 19 52 52 H 1.09008 * 109.47345 * 300.00486 * 21 20 19 53 53 H 1.08993 * 109.47333 * 59.99874 * 22 21 20 54 54 H 1.09004 * 109.46419 * 299.99857 * 22 21 20 55 55 H 0.97000 * 119.99605 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 1 1.5727 -0.3738 2.0624 6 6 3.5179 -0.6316 1.1786 7 6 4.1291 -1.2047 -0.1039 8 6 3.7428 -2.6786 -0.2193 9 1 4.0976 -3.2307 0.6510 10 6 2.2109 -2.7797 -0.3086 11 1 1.8648 -2.1779 -1.1489 12 6 1.6035 -2.2390 0.9837 13 8 1.8494 -4.1418 -0.5235 14 6 2.3236 -4.6698 -1.7670 15 6 3.8546 -4.6293 -1.7984 16 7 4.3029 -3.2718 -1.4400 17 6 5.1949 -2.6045 -2.1988 18 8 5.4729 -1.4534 -1.9367 19 6 5.8466 -3.2886 -3.3728 20 6 6.8097 -2.3175 -4.0586 21 6 7.4719 -3.0122 -5.2501 22 6 8.4355 -2.0414 -5.9356 23 6 9.0872 -2.7255 -7.1096 24 1 8.8393 -3.7503 -7.3432 25 6 10.0000 -2.0429 -7.8855 26 7 10.5691 -2.6402 -8.9097 27 14 10.4294 -0.2706 -7.4810 28 1 9.5067 0.6399 -8.2054 29 1 11.8275 0.0075 -7.8974 30 1 10.2953 -0.0502 -6.0186 31 1 -0.3633 0.4511 0.9233 32 1 -0.3634 0.5739 -0.8524 33 1 -0.3632 -1.0253 -0.0709 34 1 3.0728 1.3471 -0.1629 35 1 1.5201 1.9430 -0.7972 36 1 1.7837 1.8419 0.9602 37 1 3.7858 0.4212 1.2680 38 1 3.9062 -1.1778 2.0382 39 1 3.7501 -0.6558 -0.9659 40 1 5.2147 -1.1154 -0.0625 41 1 0.5178 -2.3252 0.9409 42 1 1.9836 -2.8084 1.8319 43 1 1.9285 -4.0724 -2.5886 44 1 1.9863 -5.7007 -1.8739 45 1 4.2059 -4.8773 -2.7999 46 1 4.2554 -5.3470 -1.0827 47 1 5.0804 -3.6024 -4.0817 48 1 6.3984 -4.1616 -3.0241 49 1 7.5759 -2.0042 -3.3494 50 1 6.2583 -1.4443 -4.4072 51 1 6.7060 -3.3260 -5.9594 52 1 8.0234 -3.8854 -4.9012 53 1 9.2013 -1.7280 -5.2262 54 1 7.8842 -1.1681 -6.2845 55 1 11.2116 -2.1601 -9.4554 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588653489.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:31 Heat of formation + Delta-G solvation = -96.896575 kcal Electronic energy + Delta-G solvation = -31210.929582 eV Core-core repulsion = 27246.910145 eV Total energy + Delta-G solvation = -3964.019436 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.03197 -40.07475 -38.97716 -36.77490 -35.90337 -35.44722 -34.54817 -32.10388 -31.65683 -30.88507 -29.09093 -28.06870 -27.34562 -25.21269 -24.46336 -23.90321 -23.13896 -22.41759 -21.68198 -20.20517 -19.92435 -18.85364 -18.06207 -17.53891 -17.21759 -17.04338 -16.66049 -16.38262 -16.30781 -15.99341 -15.73468 -15.51586 -15.32331 -15.08917 -14.69043 -14.51223 -14.27282 -13.94170 -13.75927 -13.73153 -13.51936 -13.35349 -13.26827 -13.19980 -12.94816 -12.84853 -12.62041 -12.38332 -12.29937 -12.28438 -12.06259 -11.99533 -11.84843 -11.75076 -11.57590 -11.44771 -11.33789 -11.26808 -11.22033 -11.09741 -10.75953 -10.10912 -9.41224 -9.21531 -8.29672 -6.32539 1.34593 1.36043 1.48930 1.64268 1.88692 2.35880 2.68119 2.99171 3.05735 3.47067 3.64107 3.82353 3.88734 3.96379 4.03697 4.04531 4.11878 4.18550 4.24770 4.25526 4.28671 4.33164 4.45056 4.48941 4.52706 4.57046 4.62961 4.65721 4.68553 4.74584 4.77176 4.79911 4.83405 4.85851 4.90233 4.95591 5.01403 5.05656 5.12331 5.14002 5.17599 5.19995 5.27213 5.30528 5.39152 5.59834 5.65665 5.66728 5.68827 6.10188 6.13274 6.19534 6.29643 6.38414 6.75356 7.20998 7.32200 8.86921 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016056 B = 0.002371 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.527047 B =11807.926452 C =12893.705003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.556 5.556 3 C 0.025 3.975 4 C 0.091 3.909 5 H 0.060 0.940 6 C -0.122 4.122 7 C -0.085 4.085 8 C 0.118 3.882 9 H 0.077 0.923 10 C 0.094 3.906 11 H 0.057 0.943 12 C -0.096 4.096 13 O -0.390 6.390 14 C 0.047 3.953 15 C 0.067 3.933 16 N -0.618 5.618 17 C 0.513 3.487 18 O -0.563 6.563 19 C -0.132 4.132 20 C -0.094 4.094 21 C -0.093 4.093 22 C -0.016 4.016 23 C -0.529 4.529 24 H 0.037 0.963 25 C 0.003 3.997 26 N -0.950 5.950 27 Si 0.947 3.053 28 H -0.267 1.267 29 H -0.282 1.282 30 H -0.252 1.252 31 H 0.033 0.967 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.034 0.966 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.051 0.949 44 H 0.133 0.867 45 H 0.115 0.885 46 H 0.089 0.911 47 H 0.112 0.888 48 H 0.112 0.888 49 H 0.051 0.949 50 H 0.051 0.949 51 H 0.056 0.944 52 H 0.056 0.944 53 H 0.013 0.987 54 H 0.012 0.988 55 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.737 -0.299 25.790 35.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.281 5.281 3 C -0.123 4.123 4 C -0.018 4.018 5 H 0.078 0.922 6 C -0.161 4.161 7 C -0.123 4.123 8 C 0.015 3.985 9 H 0.095 0.905 10 C 0.036 3.964 11 H 0.075 0.925 12 C -0.134 4.134 13 O -0.309 6.309 14 C -0.030 4.030 15 C -0.055 4.055 16 N -0.352 5.352 17 C 0.304 3.696 18 O -0.442 6.442 19 C -0.171 4.171 20 C -0.132 4.132 21 C -0.130 4.130 22 C -0.054 4.054 23 C -0.567 4.567 24 H 0.056 0.944 25 C -0.193 4.193 26 N -0.591 5.591 27 Si 0.771 3.229 28 H -0.192 1.192 29 H -0.207 1.207 30 H -0.176 1.176 31 H 0.051 0.949 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.053 0.947 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.100 0.900 42 H 0.104 0.896 43 H 0.070 0.930 44 H 0.151 0.849 45 H 0.133 0.867 46 H 0.108 0.892 47 H 0.130 0.870 48 H 0.130 0.870 49 H 0.070 0.930 50 H 0.070 0.930 51 H 0.075 0.925 52 H 0.075 0.925 53 H 0.032 0.968 54 H 0.030 0.970 55 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -24.417 -0.009 25.487 35.296 hybrid contribution 0.564 1.171 -0.032 1.300 sum -23.853 1.161 25.455 34.904 Atomic orbital electron populations 1.22439 0.86595 1.02553 1.00894 1.61978 1.08517 1.14146 1.43464 1.22388 1.00877 0.88474 1.00600 1.21651 0.94978 0.93061 0.92065 0.92195 1.21868 0.94046 1.01927 0.98214 1.21597 1.00008 0.92894 0.97796 1.22043 0.94317 0.95476 0.86640 0.90511 1.22283 0.92181 0.82595 0.99377 0.92463 1.21491 1.01600 0.94263 0.96013 1.87883 1.76713 1.26780 1.39489 1.23124 0.92400 1.01569 0.85881 1.22716 0.96095 0.82495 1.04181 1.48328 1.43517 1.17867 1.25516 1.21112 0.78386 0.86219 0.83926 1.90711 1.63769 1.18567 1.71193 1.21733 0.99966 1.00045 0.95366 1.21252 0.97675 0.97753 0.96501 1.21331 0.97734 0.98110 0.95869 1.19567 0.95286 0.95961 0.94555 1.21539 1.23551 0.99523 1.12131 0.94445 1.25994 0.95712 1.03036 0.94578 1.70063 1.30309 1.39406 1.19358 0.85697 0.77602 0.79680 0.79927 1.19225 1.20733 1.17625 0.94857 0.91362 0.90997 0.91962 0.91426 0.94735 0.91126 0.90315 0.92081 0.92352 0.90022 0.89626 0.93042 0.84909 0.86740 0.89241 0.87041 0.87025 0.93038 0.93011 0.92484 0.92522 0.96847 0.96959 0.92524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.30 127.69 1.19 1.48 16 2 N -0.56 -8.89 3.41 -923.12 -3.15 -12.04 16 3 C 0.02 0.38 8.64 127.69 1.10 1.48 16 4 C 0.09 1.27 2.26 44.95 0.10 1.38 16 5 H 0.06 0.71 8.13 -2.39 -0.02 0.69 16 6 C -0.12 -1.99 4.86 30.62 0.15 -1.84 16 7 C -0.09 -1.94 3.38 30.60 0.10 -1.84 16 8 C 0.12 2.40 2.87 45.13 0.13 2.53 16 9 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 10 C 0.09 1.70 2.39 30.75 0.07 1.77 16 11 H 0.06 1.28 7.48 -2.39 -0.02 1.26 16 12 C -0.10 -1.32 4.99 30.56 0.15 -1.17 16 13 O -0.39 -6.84 10.51 -148.98 -1.57 -8.41 16 14 C 0.05 0.62 6.95 72.04 0.50 1.12 16 15 C 0.07 0.92 6.51 86.27 0.56 1.48 16 16 N -0.62 -12.92 3.01 -793.37 -2.39 -15.31 16 17 C 0.51 13.62 7.65 87.65 0.67 14.29 16 18 O -0.56 -19.00 11.77 -3.03 -0.04 -19.03 16 19 C -0.13 -3.14 4.19 29.85 0.13 -3.02 16 20 C -0.09 -3.07 4.50 30.59 0.14 -2.93 16 21 C -0.09 -3.58 5.15 30.59 0.16 -3.43 16 22 C -0.02 -0.80 4.04 29.85 0.12 -0.67 16 23 C -0.53 -31.31 9.66 25.60 0.25 -31.06 16 24 H 0.04 2.39 7.99 -2.91 -0.02 2.36 16 25 C 0.00 0.21 5.47 84.66 0.46 0.67 16 26 N -0.95 -60.71 13.96 21.45 0.30 -60.42 16 27 Si 0.95 46.18 27.47 68.60 1.88 48.06 16 28 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 29 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 30 H -0.25 -11.72 6.54 99.48 0.65 -11.07 16 31 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.07 0.84 8.06 -2.39 -0.02 0.82 16 33 H 0.07 0.86 6.40 -2.38 -0.02 0.85 16 34 H 0.06 1.14 5.98 -2.39 -0.01 1.13 16 35 H 0.07 1.01 8.03 -2.39 -0.02 0.99 16 36 H 0.03 0.45 8.13 -2.39 -0.02 0.43 16 37 H 0.07 1.16 6.33 -2.39 -0.02 1.14 16 38 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.06 1.73 6.34 -2.39 -0.02 1.71 16 40 H 0.06 1.65 6.46 -2.39 -0.02 1.63 16 41 H 0.08 1.04 6.47 -2.39 -0.02 1.02 16 42 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.11 1.20 6.12 -2.39 -0.01 1.19 16 46 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.11 2.19 7.45 -2.39 -0.02 2.17 16 48 H 0.11 2.23 8.14 -2.38 -0.02 2.21 16 49 H 0.05 1.80 8.10 -2.38 -0.02 1.78 16 50 H 0.05 1.81 8.10 -2.39 -0.02 1.79 16 51 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 52 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 53 H 0.01 0.65 7.20 -2.39 -0.02 0.63 16 54 H 0.01 0.59 7.57 -2.38 -0.02 0.57 16 55 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -73.98 403.76 1.82 -72.17 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.78 Total: 14.75 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: 5.98 Total: -19.78 kcal Atomic # 7 Polarization: -82.52 SS G_CDS: -5.24 Total: -87.76 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -1.60 Total: -27.44 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 1.88 Total: 48.06 kcal Total: -73.98 1.82 -72.17 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588653489.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.728 kcal (2) G-P(sol) polarization free energy of solvation -73.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds