Wall clock time and date at job start Tue Mar 31 2020 23:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86794 * 120.00190 * 2 1 4 4 H 1.48497 * 109.47702 * 240.00211 * 3 2 1 5 5 H 1.48501 * 109.47223 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46957 * 120.00033 * 3 2 1 7 7 C 1.38814 * 119.99631 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99635 * 163.07715 * 7 2 1 9 9 N 1.36938 * 120.00372 * 343.06538 * 7 2 1 10 10 C 1.46920 * 120.62882 * 331.84618 * 9 7 2 11 11 C 1.53194 * 108.77502 * 233.62835 * 10 9 7 12 12 C 1.53045 * 109.31111 * 305.36518 * 11 10 9 13 13 N 1.46493 * 109.46243 * 181.38656 * 12 11 10 14 14 C 1.34779 * 120.00273 * 154.97207 * 13 12 11 15 15 O 1.21589 * 119.99645 * 359.97438 * 14 13 12 16 16 N 1.34772 * 120.00220 * 179.97438 * 14 13 12 17 17 C 1.46495 * 120.00096 * 179.97438 * 16 14 13 18 18 H 1.09007 * 109.47401 * 324.99860 * 17 16 14 19 19 C 1.52999 * 109.47062 * 85.00125 * 17 16 14 20 20 N 1.46894 * 109.47083 * 304.99679 * 19 17 16 21 21 C 1.53002 * 109.47147 * 205.00089 * 17 16 14 22 22 C 1.53004 * 109.47340 * 179.97438 * 21 17 16 23 23 C 1.52999 * 109.47325 * 179.97438 * 22 21 17 24 24 C 1.53007 * 109.46840 * 60.00633 * 23 22 21 25 25 C 1.53004 * 109.46644 * 299.99784 * 24 23 22 26 26 C 1.52999 * 109.47110 * 60.00065 * 21 17 16 27 27 C 1.53040 * 109.52724 * 61.36889 * 12 11 10 28 28 C 1.46926 * 120.63183 * 151.85890 * 9 7 2 29 29 H 0.97006 * 119.99962 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.59167 * 113.84179 * 10 9 7 31 31 H 1.09003 * 109.70563 * 353.48175 * 10 9 7 32 32 H 1.08996 * 109.49949 * 185.41587 * 11 10 9 33 33 H 1.08995 * 109.52909 * 65.32808 * 11 10 9 34 34 H 1.09003 * 109.45677 * 301.35963 * 12 11 10 35 35 H 0.97001 * 119.99808 * 334.96845 * 13 12 11 36 36 H 0.97000 * 119.99908 * 0.02562 * 16 14 13 37 37 H 1.09002 * 109.47030 * 184.99969 * 19 17 16 38 38 H 1.08997 * 109.47423 * 65.00199 * 19 17 16 39 39 H 1.00905 * 110.99492 * 56.05154 * 20 19 17 40 40 H 1.00906 * 110.99843 * 179.97438 * 20 19 17 41 41 H 1.08997 * 109.47194 * 299.99896 * 21 17 16 42 42 H 1.08997 * 109.47039 * 300.00170 * 22 21 17 43 43 H 1.09002 * 109.46595 * 59.99718 * 22 21 17 44 44 H 1.08997 * 109.47504 * 300.00256 * 23 22 21 45 45 H 1.09004 * 109.47118 * 179.97438 * 23 22 21 46 46 H 1.08993 * 109.46832 * 180.02562 * 24 23 22 47 47 H 1.08997 * 109.47380 * 59.99547 * 24 23 22 48 48 H 1.08997 * 109.47039 * 299.99972 * 25 24 23 49 49 H 1.09002 * 109.46758 * 179.97438 * 25 24 23 50 50 H 1.09002 * 109.47390 * 299.99962 * 26 21 17 51 51 H 1.09003 * 109.47588 * 60.00027 * 26 21 17 52 52 H 1.09003 * 109.49424 * 58.58201 * 27 12 11 53 53 H 1.08997 * 109.49748 * 178.67775 * 27 12 11 54 54 H 1.08996 * 109.59170 * 246.16622 * 28 9 7 55 55 H 1.09007 * 109.58484 * 6.44746 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2223 -0.2728 9 7 1.3700 -2.3626 0.3444 10 6 0.2262 -2.3409 1.2662 11 6 0.4981 -3.3201 2.4125 12 6 0.8132 -4.7016 1.8341 13 7 1.0413 -5.6485 2.9283 14 6 0.8379 -6.9663 2.7325 15 8 0.4646 -7.3693 1.6478 16 7 1.0483 -7.8375 3.7391 17 6 0.8267 -9.2699 3.5264 18 1 -0.0145 -9.4106 2.8476 19 6 2.0833 -9.8956 2.9179 20 7 2.4471 -9.1710 1.6930 21 6 0.5192 -9.9428 4.8657 22 6 0.2871 -11.4387 4.6436 23 6 -0.0197 -12.1117 5.9830 24 6 -1.2759 -11.4857 6.5923 25 6 -1.0438 -9.9898 6.8144 26 6 -0.7374 -9.3171 5.4742 27 6 2.0685 -4.6172 0.9627 28 6 1.8141 -3.6529 -0.2002 29 1 -0.4850 0.8401 0.0004 30 1 -0.6769 -2.6418 0.7352 31 1 0.0965 -1.3357 1.6674 32 1 -0.3823 -3.3855 3.0517 33 1 1.3476 -2.9687 2.9981 34 1 -0.0269 -5.0419 1.2286 35 1 1.3388 -5.3269 3.7938 36 1 1.3458 -7.5160 4.6046 37 1 1.8889 -10.9408 2.6776 38 1 2.9031 -9.8338 3.6337 39 1 2.5696 -8.1867 1.8781 40 1 3.2750 -9.5653 1.2720 41 1 1.3604 -9.8021 5.5446 42 1 -0.5542 -11.5790 3.9649 43 1 1.1822 -11.8847 4.2098 44 1 0.8219 -11.9714 6.6613 45 1 -0.1855 -13.1773 5.8246 46 1 -1.4942 -11.9648 7.5466 47 1 -2.1174 -11.6260 5.9139 48 1 -0.2022 -9.8495 7.4928 49 1 -1.9388 -9.5437 7.2480 50 1 -0.5725 -8.2513 5.6325 51 1 -1.5786 -9.4577 4.7954 52 1 2.9032 -4.2530 1.5617 53 1 2.3059 -5.6058 0.5700 54 1 1.0406 -4.0607 -0.8509 55 1 2.7334 -3.5125 -0.7689 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591351214.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:10 Heat of formation + Delta-G solvation = -54.452474 kcal Electronic energy + Delta-G solvation = -30888.828180 eV Core-core repulsion = 26958.942009 eV Total energy + Delta-G solvation = -3929.886171 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.41053 -39.92036 -38.90253 -36.77349 -35.74616 -34.34343 -33.59530 -32.33305 -31.69381 -31.52612 -30.79971 -27.73454 -26.72643 -24.34523 -23.88255 -23.49329 -23.05879 -21.79699 -21.48703 -21.02890 -20.61967 -19.26091 -18.53514 -17.61469 -17.17173 -16.76265 -16.47487 -16.02192 -15.70347 -15.47641 -15.34801 -15.22760 -15.03090 -14.92680 -14.87752 -14.70184 -14.55439 -14.22225 -14.02095 -13.48509 -13.23169 -13.11499 -12.99593 -12.84102 -12.68860 -12.65574 -12.55249 -12.51872 -12.19807 -12.01415 -11.97675 -11.85386 -11.81110 -11.51432 -11.33213 -11.29662 -11.09763 -10.94580 -10.85907 -10.53745 -10.13261 -9.70954 -9.35337 -8.69314 -7.86488 -5.32245 1.49250 1.50938 1.58263 1.79148 2.35273 2.52998 3.27242 3.37803 3.44918 3.68919 3.80983 3.86828 3.94949 3.97597 4.11661 4.20974 4.26356 4.39258 4.39863 4.46212 4.49472 4.50683 4.64434 4.66666 4.68579 4.69512 4.72265 4.82569 4.84841 4.88066 4.95855 5.04408 5.10029 5.11888 5.19437 5.20686 5.29732 5.30778 5.31407 5.33384 5.42634 5.46597 5.49093 5.61213 5.65531 5.70113 5.71115 5.72082 6.12901 6.34729 6.40179 6.59687 7.15579 7.26183 7.80698 7.85428 8.38710 9.20478 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.025148 B = 0.002158 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.145098 B =12974.839397 C =13676.310815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.970 3.030 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.275 1.275 7 C -0.263 4.263 8 H 0.067 0.933 9 N -0.608 5.608 10 C 0.179 3.821 11 C -0.127 4.127 12 C 0.186 3.814 13 N -0.730 5.730 14 C 0.695 3.305 15 O -0.608 6.608 16 N -0.730 5.730 17 C 0.173 3.827 18 H 0.059 0.941 19 C 0.053 3.947 20 N -0.853 5.853 21 C -0.079 4.079 22 C -0.113 4.113 23 C -0.114 4.114 24 C -0.123 4.123 25 C -0.116 4.116 26 C -0.111 4.111 27 C -0.120 4.120 28 C 0.144 3.856 29 H 0.251 0.749 30 H -0.008 1.008 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.052 0.948 35 H 0.406 0.594 36 H 0.406 0.594 37 H 0.086 0.914 38 H 0.038 0.962 39 H 0.334 0.666 40 H 0.339 0.661 41 H 0.091 0.909 42 H 0.054 0.946 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.053 0.947 48 H 0.071 0.929 49 H 0.059 0.941 50 H 0.061 0.939 51 H 0.045 0.955 52 H 0.064 0.936 53 H 0.059 0.941 54 H 0.004 0.996 55 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.262 -24.267 18.431 30.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.247 4.247 3 Si 0.798 3.202 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.201 1.201 7 C -0.393 4.393 8 H 0.085 0.915 9 N -0.332 5.332 10 C 0.053 3.947 11 C -0.167 4.167 12 C 0.080 3.920 13 N -0.386 5.386 14 C 0.395 3.605 15 O -0.486 6.486 16 N -0.387 5.387 17 C 0.068 3.932 18 H 0.077 0.923 19 C -0.079 4.079 20 N -0.385 5.385 21 C -0.099 4.099 22 C -0.151 4.151 23 C -0.152 4.152 24 C -0.160 4.160 25 C -0.153 4.153 26 C -0.149 4.149 27 C -0.160 4.160 28 C 0.018 3.982 29 H 0.060 0.940 30 H 0.010 0.990 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.242 0.758 36 H 0.242 0.758 37 H 0.104 0.896 38 H 0.056 0.944 39 H 0.148 0.852 40 H 0.152 0.848 41 H 0.109 0.891 42 H 0.073 0.927 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.072 0.928 48 H 0.089 0.911 49 H 0.078 0.922 50 H 0.080 0.920 51 H 0.064 0.936 52 H 0.083 0.917 53 H 0.078 0.922 54 H 0.022 0.978 55 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.097 -24.749 17.141 30.178 hybrid contribution 1.051 1.685 0.582 2.070 sum 3.148 -23.064 17.723 29.256 Atomic orbital electron populations 1.70187 1.06709 1.25999 1.55306 1.25841 0.96065 1.01598 1.01167 0.85306 0.77507 0.79018 0.78381 1.20315 1.22104 1.20082 1.19485 0.92859 0.85843 1.41155 0.91497 1.44338 1.35919 1.02204 1.50734 1.20554 0.87676 0.97724 0.88792 1.22242 1.01765 0.93871 0.98797 1.20389 0.96755 0.87557 0.87320 1.45150 1.73180 1.04511 1.15731 1.16162 0.78576 0.81325 0.84460 1.90989 1.53734 1.78155 1.25737 1.45034 1.73534 1.06366 1.13773 1.20886 0.97215 0.78286 0.96847 0.92301 1.22292 0.96443 0.98464 0.90721 1.58652 1.43182 1.07408 1.29215 1.21336 0.98896 0.95409 0.94209 1.21588 1.01987 0.93480 0.98012 1.21504 0.98041 0.99484 0.96167 1.21569 0.98009 0.95564 1.00872 1.21521 1.01774 0.95481 0.96566 1.21536 0.96915 0.99582 0.96881 1.22142 0.97857 0.98451 0.97550 1.20969 0.97180 0.86004 0.94024 0.94034 0.98986 0.91902 0.90799 0.91181 0.93018 0.75847 0.75812 0.89614 0.94394 0.85178 0.84788 0.89099 0.92717 0.90731 0.91156 0.91424 0.91404 0.92849 0.91074 0.92205 0.91989 0.93636 0.91694 0.92189 0.97786 0.92543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.73 11.19 21.65 0.24 -55.49 16 2 C -0.05 -2.88 4.92 84.86 0.42 -2.46 16 3 Si 0.97 44.75 29.59 68.60 2.03 46.78 16 4 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 7 C -0.26 -14.58 9.58 84.03 0.81 -13.78 16 8 H 0.07 3.60 7.88 -2.91 -0.02 3.58 16 9 N -0.61 -31.13 2.99 -699.09 -2.09 -33.22 16 10 C 0.18 8.67 5.30 86.36 0.46 9.13 16 11 C -0.13 -4.56 5.55 30.67 0.17 -4.39 16 12 C 0.19 6.36 2.42 45.02 0.11 6.47 16 13 N -0.73 -18.82 5.08 -457.69 -2.33 -21.15 16 14 C 0.69 19.12 6.84 179.06 1.22 20.35 16 15 O -0.61 -22.78 14.07 -4.00 -0.06 -22.84 16 16 N -0.73 -13.49 4.19 -457.81 -1.92 -15.41 16 17 C 0.17 3.13 2.02 44.99 0.09 3.22 16 18 H 0.06 1.53 7.58 -2.38 -0.02 1.51 16 19 C 0.05 0.91 6.03 86.30 0.52 1.43 16 20 N -0.85 -20.12 8.57 -186.73 -1.60 -21.72 16 21 C -0.08 -0.93 1.82 -10.79 -0.02 -0.95 16 22 C -0.11 -1.22 4.85 30.60 0.15 -1.07 16 23 C -0.11 -1.01 5.92 30.60 0.18 -0.83 16 24 C -0.12 -1.22 5.92 30.60 0.18 -1.04 16 25 C -0.12 -1.22 5.93 30.61 0.18 -1.03 16 26 C -0.11 -1.47 5.05 30.61 0.15 -1.32 16 27 C -0.12 -4.31 5.65 30.67 0.17 -4.14 16 28 C 0.14 6.39 6.52 86.36 0.56 6.95 16 29 H 0.25 14.45 8.31 -92.70 -0.77 13.67 16 30 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 31 H 0.06 3.39 6.06 -2.39 -0.01 3.38 16 32 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.05 2.12 7.58 -2.39 -0.02 2.10 16 35 H 0.41 7.77 8.62 -92.71 -0.80 6.97 16 36 H 0.41 5.01 8.40 -92.71 -0.78 4.23 16 37 H 0.09 1.34 6.71 -2.39 -0.02 1.32 16 38 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.33 8.86 6.20 -89.69 -0.56 8.31 16 40 H 0.34 6.73 9.08 -89.69 -0.81 5.92 16 41 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.07 0.70 6.54 -2.39 -0.02 0.69 16 44 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 46 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 48 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 49 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 50 H 0.06 0.84 7.44 -2.39 -0.02 0.82 16 51 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 52 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 53 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 54 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 55 H 0.06 2.43 7.93 -2.38 -0.02 2.41 16 Total: -1.00 -70.38 409.93 -2.41 -72.79 By element: Atomic # 1 Polarization: 35.75 SS G_CDS: -2.05 Total: 33.70 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: 5.36 Total: 16.56 kcal Atomic # 7 Polarization: -139.28 SS G_CDS: -7.70 Total: -146.98 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.06 Total: -22.84 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -70.38 -2.41 -72.79 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591351214.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.338 kcal (2) G-P(sol) polarization free energy of solvation -70.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds