Wall clock time and date at job start Tue Mar 31 2020 23:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.46976 * 2 1 4 4 C 1.52994 * 109.47480 * 120.00158 * 2 1 3 5 5 H 1.08996 * 109.47515 * 192.16002 * 4 2 1 6 6 C 1.53007 * 109.47260 * 72.16220 * 4 2 1 7 7 N 1.46901 * 109.47052 * 67.34288 * 6 4 2 8 8 C 1.46895 * 110.99913 * 173.39242 * 7 6 4 9 9 C 1.52996 * 109.47270 * 180.02562 * 8 7 6 10 10 H 1.08997 * 109.47201 * 59.99289 * 9 8 7 11 11 O 1.42904 * 109.46647 * 299.99835 * 9 8 7 12 12 C 1.52998 * 109.47464 * 179.97438 * 9 8 7 13 13 N 1.46893 * 109.47411 * 184.99541 * 12 9 8 14 14 C 1.46905 * 110.99898 * 66.04698 * 13 12 9 15 15 C 1.46899 * 111.00318 * 189.99947 * 13 12 9 16 16 C 1.50700 * 109.47250 * 170.00170 * 15 13 12 17 17 H 1.08005 * 120.00050 * 0.02562 * 16 15 13 18 18 C 1.37879 * 120.00195 * 179.97438 * 16 15 13 19 19 N 1.31519 * 119.99871 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00358 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47023 * 59.99681 * 20 18 16 22 22 H 1.48500 * 109.47454 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.46783 * 300.00164 * 20 18 16 24 24 C 1.50706 * 109.47370 * 312.16394 * 4 2 1 25 25 C 1.35315 * 126.12780 * 80.81397 * 24 4 2 26 26 C 1.39870 * 107.91915 * 180.02562 * 25 24 4 27 27 N 1.30827 * 108.20342 * 0.02562 * 26 25 24 28 28 N 1.34944 * 126.12819 * 260.87829 * 24 4 2 29 29 C 1.46504 * 126.03238 * 359.94675 * 28 24 4 30 30 H 1.09002 * 109.47858 * 53.22477 * 1 2 3 31 31 H 1.09007 * 109.47155 * 173.22486 * 1 2 3 32 32 H 1.09004 * 109.47404 * 293.22120 * 1 2 3 33 33 H 1.09001 * 109.47182 * 240.00379 * 2 1 3 34 34 H 1.08994 * 109.47110 * 179.18482 * 3 2 1 35 35 H 1.08997 * 109.47084 * 299.18287 * 3 2 1 36 36 H 1.09003 * 109.47114 * 59.18451 * 3 2 1 37 37 H 1.09000 * 109.47334 * 187.34390 * 6 4 2 38 38 H 1.09004 * 109.46745 * 307.34436 * 6 4 2 39 39 H 1.00903 * 110.99914 * 297.34653 * 7 6 4 40 40 H 1.08999 * 109.47200 * 300.00107 * 8 7 6 41 41 H 1.08997 * 109.47589 * 59.99841 * 8 7 6 42 42 H 0.96704 * 114.00068 * 299.99747 * 11 9 8 43 43 H 1.08995 * 109.46954 * 304.99724 * 12 9 8 44 44 H 1.09002 * 109.46855 * 64.99536 * 12 9 8 45 45 H 1.08998 * 109.47248 * 59.99498 * 14 13 12 46 46 H 1.09004 * 109.47010 * 180.02562 * 14 13 12 47 47 H 1.09005 * 109.46788 * 300.00096 * 14 13 12 48 48 H 1.08996 * 109.47152 * 290.00102 * 15 13 12 49 49 H 1.08998 * 109.47282 * 50.00013 * 15 13 12 50 50 H 0.96994 * 120.00492 * 179.97438 * 19 18 16 51 51 H 1.08004 * 126.03825 * 0.06942 * 25 24 4 52 52 H 1.07996 * 125.89621 * 180.02562 * 26 25 24 53 53 H 1.09002 * 109.47347 * 270.02396 * 29 28 24 54 54 H 1.08993 * 109.47349 * 30.02950 * 29 28 24 55 55 H 1.09007 * 109.46961 * 150.03089 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2491 5 1 3.1082 -0.5376 1.3640 6 6 1.7935 -2.2246 1.1065 7 7 2.6426 -2.7605 0.0342 8 6 2.5500 -4.2252 -0.0282 9 6 3.4463 -4.7453 -1.1538 10 1 4.4786 -4.4544 -0.9600 11 8 3.0199 -4.1876 -2.3985 12 6 3.3503 -6.2709 -1.2185 13 7 4.2995 -6.7794 -2.2176 14 6 5.6861 -6.5338 -1.7993 15 6 4.0737 -8.2070 -2.4797 16 6 4.8891 -8.6339 -3.6730 17 1 5.5131 -7.9164 -4.1852 18 6 4.8395 -9.9406 -4.1102 19 7 4.0800 -10.8144 -3.4862 20 14 5.8508 -10.4698 -5.5889 21 1 7.2912 -10.2388 -5.3117 22 1 5.6224 -11.9130 -5.8539 23 1 5.4421 -9.6781 -6.7770 24 6 1.3083 -0.2050 2.4613 25 6 0.0754 -0.5839 2.8703 26 6 -0.2318 0.1324 4.0317 27 7 0.7801 0.9137 4.3097 28 7 1.7649 0.7187 3.3327 29 6 3.0616 1.3975 3.2683 30 1 -0.3635 0.6152 -0.8231 31 1 -0.3634 -1.0206 -0.1212 32 1 -0.3634 0.4052 0.9444 33 1 1.8933 -0.5138 -0.8900 34 1 3.1298 1.4426 0.0146 35 1 1.6886 1.9521 -0.8972 36 1 1.6647 1.9606 0.8826 37 1 2.0355 -2.7231 2.0451 38 1 0.7457 -2.3993 0.8619 39 1 2.4076 -2.3450 -0.8548 40 1 2.8755 -4.6506 0.9210 41 1 1.5175 -4.5161 -0.2216 42 1 2.1082 -4.4060 -2.6356 43 1 3.5904 -6.6918 -0.2421 44 1 2.3375 -6.5597 -1.4995 45 1 5.8740 -7.0370 -0.8508 46 1 6.3680 -6.9197 -2.5571 47 1 5.8452 -5.4621 -1.6797 48 1 4.3737 -8.7884 -1.6079 49 1 3.0163 -8.3764 -2.6829 50 1 4.0448 -11.7335 -3.7939 51 1 -0.5591 -1.3114 2.3859 52 1 -1.1463 0.0541 4.6007 53 1 3.8017 0.8204 3.8228 54 1 3.3745 1.4854 2.2280 55 1 2.9734 2.3917 3.7066 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591763435.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:45 Heat of formation + Delta-G solvation = -1.226230 kcal Electronic energy + Delta-G solvation = -29928.545603 eV Core-core repulsion = 26000.967495 eV Total energy + Delta-G solvation = -3927.578108 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.41181 -39.69715 -38.58072 -37.17077 -35.33065 -34.61153 -34.12300 -32.07805 -31.07295 -29.33419 -28.57086 -28.05817 -27.60447 -27.04352 -25.15447 -23.74865 -22.69833 -21.95748 -21.85718 -21.67122 -19.60010 -18.56069 -17.73817 -17.63099 -17.14188 -16.85947 -16.66754 -16.30194 -15.88657 -15.78283 -15.56420 -15.28641 -15.20447 -14.88218 -14.63954 -14.59415 -14.11063 -14.06364 -13.79145 -13.69351 -13.50079 -13.29643 -13.20393 -13.08529 -12.94491 -12.83247 -12.72853 -12.55248 -12.50124 -12.38294 -12.35840 -11.99590 -11.77849 -11.64336 -11.58028 -11.54347 -11.46268 -11.36808 -10.70239 -10.60801 -10.15575 -9.36760 -9.32556 -8.95135 -8.20052 -6.29936 0.94858 1.41679 1.44930 1.52860 1.65788 1.92944 2.40831 2.91157 3.12192 3.40532 3.59530 3.71686 3.75169 3.83951 3.89030 4.06126 4.13697 4.20542 4.28890 4.31696 4.36658 4.38343 4.44462 4.50933 4.58320 4.60365 4.65690 4.71293 4.74217 4.76734 4.78625 4.81276 4.85699 4.90525 4.99385 5.03802 5.07321 5.08104 5.18007 5.19455 5.26197 5.28401 5.34082 5.42671 5.50798 5.65282 5.77324 5.99739 6.06654 6.13426 6.33100 6.48852 6.65062 6.79973 6.85953 6.98781 7.39628 8.90596 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.025170 B = 0.001765 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.184557 B =15856.101092 C =16056.067146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.084 4.084 3 C -0.147 4.147 4 C -0.011 4.011 5 H 0.090 0.910 6 C 0.076 3.924 7 N -0.685 5.685 8 C 0.040 3.960 9 C 0.130 3.870 10 H 0.095 0.905 11 O -0.559 6.559 12 C 0.024 3.976 13 N -0.540 5.540 14 C 0.040 3.960 15 C 0.208 3.792 16 C -0.524 4.524 17 H 0.061 0.939 18 C 0.000 4.000 19 N -0.934 5.934 20 Si 0.970 3.030 21 H -0.268 1.268 22 H -0.283 1.283 23 H -0.268 1.268 24 C 0.104 3.896 25 C -0.280 4.280 26 C 0.038 3.962 27 N -0.338 5.338 28 N -0.375 5.375 29 C 0.086 3.914 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.043 0.957 37 H 0.066 0.934 38 H 0.046 0.954 39 H 0.351 0.649 40 H 0.080 0.920 41 H 0.043 0.957 42 H 0.379 0.621 43 H 0.031 0.969 44 H 0.068 0.932 45 H 0.010 0.990 46 H 0.054 0.946 47 H 0.077 0.923 48 H -0.040 1.040 49 H 0.004 0.996 50 H 0.264 0.736 51 H 0.155 0.845 52 H 0.202 0.798 53 H 0.081 0.919 54 H 0.103 0.897 55 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.288 26.153 12.455 29.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.103 4.103 3 C -0.205 4.205 4 C -0.032 4.032 5 H 0.108 0.892 6 C -0.054 4.054 7 N -0.319 5.319 8 C -0.091 4.091 9 C 0.070 3.930 10 H 0.113 0.887 11 O -0.365 6.365 12 C -0.106 4.106 13 N -0.264 5.264 14 C -0.109 4.109 15 C 0.082 3.918 16 C -0.562 4.562 17 H 0.080 0.920 18 C -0.198 4.198 19 N -0.575 5.575 20 Si 0.794 3.206 21 H -0.193 1.193 22 H -0.208 1.208 23 H -0.193 1.193 24 C -0.025 4.025 25 C -0.309 4.309 26 C -0.147 4.147 27 N -0.160 5.160 28 N -0.157 5.157 29 C -0.054 4.054 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.171 0.829 40 H 0.098 0.902 41 H 0.062 0.938 42 H 0.227 0.773 43 H 0.049 0.951 44 H 0.086 0.914 45 H 0.029 0.971 46 H 0.073 0.927 47 H 0.096 0.904 48 H -0.022 1.022 49 H 0.022 0.978 50 H 0.073 0.927 51 H 0.172 0.828 52 H 0.218 0.782 53 H 0.100 0.900 54 H 0.122 0.878 55 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.636 27.431 13.221 30.968 hybrid contribution -1.308 -2.228 -0.518 2.635 sum -6.945 25.203 12.703 29.065 Atomic orbital electron populations 1.22073 0.94820 1.01969 1.02312 1.21100 0.96365 0.96323 0.96502 1.21901 1.01340 0.95570 1.01648 1.19836 0.99320 0.94413 0.89588 0.89179 1.21839 0.95347 0.92958 0.95243 1.60274 1.57559 1.04575 1.09483 1.22464 0.98442 0.88771 0.99375 1.21770 0.99036 0.89067 0.83152 0.88714 1.86573 1.35116 1.75533 1.39236 1.22842 0.97152 0.96909 0.93658 1.61946 1.03708 1.17881 1.42838 1.22238 0.90175 1.00609 0.97836 1.19385 0.95359 0.83054 0.94048 1.21448 1.26413 0.94791 1.13559 0.92048 1.25927 0.96945 0.96616 1.00312 1.70073 1.40819 1.04150 1.42457 0.85431 0.79047 0.76966 0.79148 1.19288 1.20802 1.19338 1.21079 0.95357 0.92594 0.93480 1.21417 0.98156 1.09858 1.01471 1.24253 0.98449 0.94796 0.97191 1.77316 0.99693 1.25909 1.13097 1.48697 1.15205 1.32308 1.19532 1.22160 0.79672 0.98539 1.05037 0.92634 0.92406 0.92153 0.89713 0.91687 0.91972 0.93811 0.91561 0.93607 0.82859 0.90177 0.93850 0.77311 0.95055 0.91367 0.97141 0.92702 0.90407 1.02242 0.97779 0.92693 0.82758 0.78175 0.90036 0.87835 0.88802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 8.18 71.98 0.59 -1.31 16 2 C -0.08 -0.99 2.63 -10.80 -0.03 -1.02 16 3 C -0.15 -1.62 8.02 71.98 0.58 -1.04 16 4 C -0.01 -0.14 1.89 -11.54 -0.02 -0.17 16 5 H 0.09 1.22 7.27 -2.39 -0.02 1.20 16 6 C 0.08 1.10 4.60 86.31 0.40 1.49 16 7 N -0.69 -11.52 6.45 -513.89 -3.32 -14.84 16 8 C 0.04 0.76 5.37 86.30 0.46 1.23 16 9 C 0.13 3.33 3.19 30.59 0.10 3.42 16 10 H 0.10 2.63 6.33 -2.39 -0.02 2.62 16 11 O -0.56 -14.93 12.62 -148.98 -1.88 -16.81 16 12 C 0.02 0.78 4.60 86.30 0.40 1.18 16 13 N -0.54 -23.21 4.70 -927.06 -4.36 -27.57 16 14 C 0.04 1.55 9.14 127.69 1.17 2.72 16 15 C 0.21 11.13 4.72 85.56 0.40 11.54 16 16 C -0.52 -30.02 8.46 25.60 0.22 -29.80 16 17 H 0.06 3.47 7.12 -2.91 -0.02 3.45 16 18 C 0.00 -0.01 5.46 84.65 0.46 0.46 16 19 N -0.93 -56.38 13.29 21.45 0.28 -56.10 16 20 Si 0.97 44.52 29.54 68.60 2.03 46.55 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 24 C 0.10 1.64 4.44 41.41 0.18 1.82 16 25 C -0.28 -4.46 7.64 21.99 0.17 -4.29 16 26 C 0.04 0.65 12.03 85.24 1.02 1.67 16 27 N -0.34 -7.10 12.57 -57.03 -0.72 -7.81 16 28 N -0.38 -6.48 4.01 -356.02 -1.43 -7.90 16 29 C 0.09 0.94 10.83 127.77 1.38 2.32 16 30 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.68 6.98 -2.38 -0.02 0.66 16 32 H 0.06 0.87 5.29 -2.38 -0.01 0.86 16 33 H 0.08 1.03 6.46 -2.39 -0.02 1.01 16 34 H 0.06 0.61 7.79 -2.39 -0.02 0.59 16 35 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.04 0.56 7.12 -2.39 -0.02 0.54 16 37 H 0.07 1.09 8.11 -2.39 -0.02 1.07 16 38 H 0.05 0.62 6.32 -2.38 -0.02 0.60 16 39 H 0.35 5.74 6.50 -89.69 -0.58 5.16 16 40 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.38 7.95 9.05 -74.05 -0.67 7.28 16 43 H 0.03 1.03 8.12 -2.39 -0.02 1.01 16 44 H 0.07 2.25 7.93 -2.39 -0.02 2.23 16 45 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 46 H 0.05 2.33 6.76 -2.39 -0.02 2.32 16 47 H 0.08 2.56 6.37 -2.38 -0.02 2.54 16 48 H -0.04 -2.33 8.12 -2.39 -0.02 -2.35 16 49 H 0.00 0.24 7.93 -2.39 -0.02 0.22 16 50 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 51 H 0.15 2.04 7.57 -2.91 -0.02 2.02 16 52 H 0.20 2.23 8.06 -2.91 -0.02 2.21 16 53 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 54 H 0.10 0.79 5.67 -2.39 -0.01 0.77 16 55 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 Total: -1.00 -70.49 421.87 -2.28 -72.77 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: -0.37 Total: 21.51 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: 7.48 Total: -9.79 kcal Atomic # 7 Polarization: -104.69 SS G_CDS: -9.53 Total: -114.22 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -1.88 Total: -16.81 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -70.49 -2.28 -72.77 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591763435.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.540 kcal (2) G-P(sol) polarization free energy of solvation -70.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds