Wall clock time and date at job start Tue Mar 31 2020 23:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.47163 * 2 1 4 4 C 1.53008 * 109.46663 * 119.99756 * 2 1 3 5 5 H 1.08996 * 109.46885 * 305.61670 * 4 2 1 6 6 C 1.52999 * 109.47274 * 65.62332 * 4 2 1 7 7 N 1.46897 * 109.46870 * 293.26076 * 6 4 2 8 8 C 1.46901 * 111.00119 * 180.02562 * 7 6 4 9 9 C 1.53001 * 109.47444 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.47129 * 304.99927 * 9 8 7 11 11 O 1.42904 * 109.46894 * 64.99681 * 9 8 7 12 12 C 1.52999 * 109.47233 * 184.99860 * 9 8 7 13 13 N 1.46901 * 109.47193 * 180.02562 * 12 9 8 14 14 C 1.46903 * 110.99625 * 293.95001 * 13 12 9 15 15 C 1.46901 * 110.99721 * 170.00222 * 13 12 9 16 16 C 1.50704 * 109.46738 * 190.00036 * 15 13 12 17 17 H 1.08001 * 119.99752 * 359.97438 * 16 15 13 18 18 C 1.37872 * 119.99964 * 179.97438 * 16 15 13 19 19 N 1.31513 * 119.99949 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00054 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46779 * 60.00138 * 20 18 16 22 22 H 1.48500 * 109.47370 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47502 * 300.00436 * 20 18 16 24 24 C 1.50700 * 109.46744 * 185.62108 * 4 2 1 25 25 C 1.35311 * 126.12823 * 324.69217 * 24 4 2 26 26 C 1.39874 * 107.92187 * 179.90406 * 25 24 4 27 27 N 1.30841 * 108.20148 * 0.36240 * 26 25 24 28 28 N 1.34949 * 126.12703 * 144.99638 * 24 4 2 29 29 C 1.46500 * 126.03589 * 359.97438 * 28 24 4 30 30 H 1.09001 * 109.47276 * 171.82921 * 1 2 3 31 31 H 1.09002 * 109.46862 * 291.83013 * 1 2 3 32 32 H 1.08997 * 109.46665 * 51.82823 * 1 2 3 33 33 H 1.08998 * 109.47280 * 239.99456 * 2 1 3 34 34 H 1.09002 * 109.46901 * 179.97438 * 3 2 1 35 35 H 1.09005 * 109.47200 * 299.99128 * 3 2 1 36 36 H 1.08998 * 109.47466 * 59.99570 * 3 2 1 37 37 H 1.08993 * 109.47114 * 173.26159 * 6 4 2 38 38 H 1.08994 * 109.47404 * 53.25849 * 6 4 2 39 39 H 1.00899 * 111.00178 * 303.95620 * 7 6 4 40 40 H 1.09001 * 109.47203 * 59.99821 * 8 7 6 41 41 H 1.09003 * 109.46542 * 300.00045 * 8 7 6 42 42 H 0.96704 * 113.99982 * 60.00443 * 11 9 8 43 43 H 1.09000 * 109.47118 * 300.00074 * 12 9 8 44 44 H 1.08997 * 109.46778 * 59.99567 * 12 9 8 45 45 H 1.09007 * 109.46913 * 60.00506 * 14 13 12 46 46 H 1.09000 * 109.46673 * 179.97438 * 14 13 12 47 47 H 1.08993 * 109.47644 * 300.00151 * 14 13 12 48 48 H 1.08995 * 109.47216 * 309.99312 * 15 13 12 49 49 H 1.09000 * 109.47425 * 70.00011 * 15 13 12 50 50 H 0.97007 * 119.99782 * 180.02562 * 19 18 16 51 51 H 1.07996 * 126.04133 * 0.02659 * 25 24 4 52 52 H 1.08003 * 125.90107 * 180.13941 * 26 25 24 53 53 H 1.09009 * 109.47271 * 89.99342 * 29 28 24 54 54 H 1.09003 * 109.47369 * 209.99524 * 29 28 24 55 55 H 1.09008 * 109.47151 * 329.99823 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2494 5 1 1.5968 -0.2687 2.1364 6 6 1.6486 -2.1988 1.1808 7 7 0.1879 -2.3231 1.2735 8 6 -0.2256 -3.7314 1.2115 9 6 -1.7498 -3.8203 1.3103 10 1 -2.0860 -3.3080 2.2117 11 8 -2.3382 -3.2027 0.1638 12 6 -2.1721 -5.2896 1.3712 13 7 -3.6356 -5.3750 1.4654 14 6 -4.1143 -4.8207 2.7389 15 6 -4.0946 -6.7591 1.2881 16 6 -5.5948 -6.7764 1.1451 17 1 -6.1514 -5.8516 1.1827 18 6 -6.2565 -7.9726 0.9663 19 7 -5.5786 -9.0986 0.9200 20 14 -8.1160 -7.9941 0.7898 21 1 -8.5103 -7.1858 -0.3920 22 1 -8.5800 -9.3931 0.6091 23 1 -8.7359 -7.4202 2.0111 24 6 3.5405 -0.6019 1.3209 25 6 4.3919 -0.6019 0.2692 26 6 5.6920 -0.4692 0.7679 27 7 5.6242 -0.4000 2.0727 28 7 4.2764 -0.4815 2.4458 29 6 3.7573 -0.4432 3.8152 30 1 -0.3634 -1.0172 -0.1461 31 1 -0.3633 0.3822 0.9540 32 1 -0.3632 0.6351 -0.8079 33 1 1.8934 -0.5139 -0.8899 34 1 3.1301 1.4424 0.0005 35 1 1.6768 1.9562 -0.8901 36 1 1.6767 1.9563 0.8899 37 1 2.1123 -2.7362 2.0079 38 1 1.9900 -2.6216 0.2360 39 1 -0.1603 -1.8809 2.1110 40 1 0.2251 -4.2792 2.0392 41 1 0.1029 -4.1652 0.2670 42 1 -2.0826 -3.6082 -0.6761 43 1 -1.8359 -5.8020 0.4698 44 1 -1.7232 -5.7606 2.2457 45 1 -3.8198 -3.7738 2.8130 46 1 -5.2009 -4.8960 2.7822 47 1 -3.6777 -5.3804 3.5659 48 1 -3.6395 -7.1809 0.3920 49 1 -3.8055 -7.3519 2.1559 50 1 -6.0442 -9.9402 0.7938 51 1 4.1162 -0.6872 -0.7714 52 1 6.5960 -0.4338 0.1780 53 1 3.7067 -1.4569 4.2131 54 1 4.4190 0.1589 4.4379 55 1 2.7599 -0.0034 3.8136 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591763436.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:49 Heat of formation + Delta-G solvation = 5.336555 kcal Electronic energy + Delta-G solvation = -30030.734767 eV Core-core repulsion = 26103.441243 eV Total energy + Delta-G solvation = -3927.293524 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.33133 -39.64572 -38.55804 -37.04018 -35.27141 -34.59351 -34.19969 -31.97580 -31.14233 -29.42009 -28.60557 -27.59285 -27.51808 -27.03370 -25.15524 -23.43112 -22.70221 -22.39917 -21.70034 -21.36323 -19.92120 -18.55099 -17.93785 -17.47830 -17.01601 -16.78494 -16.48658 -16.11919 -15.93857 -15.84261 -15.40961 -15.26615 -15.24281 -14.89723 -14.65022 -14.39752 -14.25753 -13.94532 -13.79129 -13.46797 -13.35602 -13.23044 -13.18623 -13.01160 -12.96006 -12.75788 -12.60015 -12.55247 -12.51945 -12.36041 -12.30453 -11.97190 -11.84826 -11.58604 -11.56688 -11.41394 -11.37029 -11.33148 -10.60842 -10.60607 -10.18605 -9.39168 -9.11838 -8.93619 -8.20023 -6.29852 0.92374 1.41713 1.44985 1.52862 1.64561 1.91953 2.40868 2.91678 3.12334 3.40081 3.65054 3.73805 3.76730 3.80400 4.00984 4.03163 4.21578 4.22339 4.33893 4.35516 4.37592 4.45311 4.50331 4.53921 4.59651 4.62700 4.66724 4.72549 4.75212 4.76190 4.82726 4.86592 4.93999 4.97813 5.00588 5.08716 5.17770 5.19968 5.21707 5.30166 5.33845 5.36360 5.44755 5.64012 5.65418 5.76528 5.95861 6.04620 6.07380 6.11955 6.33967 6.44180 6.66193 6.78068 6.86393 7.11269 7.39827 8.90582 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.024053 B = 0.001835 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.813067 B =15256.326956 C =15685.131952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.065 4.065 3 C -0.149 4.149 4 C -0.009 4.009 5 H 0.088 0.912 6 C 0.078 3.922 7 N -0.663 5.663 8 C 0.036 3.964 9 C 0.134 3.866 10 H 0.092 0.908 11 O -0.550 6.550 12 C 0.022 3.978 13 N -0.538 5.538 14 C 0.041 3.959 15 C 0.208 3.792 16 C -0.523 4.523 17 H 0.062 0.938 18 C 0.000 4.000 19 N -0.935 5.935 20 Si 0.969 3.031 21 H -0.268 1.268 22 H -0.283 1.283 23 H -0.268 1.268 24 C 0.099 3.901 25 C -0.279 4.279 26 C 0.039 3.961 27 N -0.340 5.340 28 N -0.380 5.380 29 C 0.089 3.911 30 H 0.097 0.903 31 H 0.043 0.957 32 H 0.035 0.965 33 H 0.070 0.930 34 H 0.051 0.949 35 H 0.056 0.944 36 H 0.047 0.953 37 H 0.025 0.975 38 H 0.075 0.925 39 H 0.345 0.655 40 H 0.040 0.960 41 H 0.080 0.920 42 H 0.378 0.622 43 H 0.066 0.934 44 H 0.028 0.972 45 H 0.079 0.921 46 H 0.053 0.947 47 H 0.009 0.991 48 H 0.003 0.997 49 H -0.041 1.041 50 H 0.264 0.736 51 H 0.156 0.844 52 H 0.203 0.797 53 H 0.080 0.920 54 H 0.092 0.908 55 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.453 20.412 1.870 28.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.084 4.084 3 C -0.206 4.206 4 C -0.029 4.029 5 H 0.106 0.894 6 C -0.052 4.052 7 N -0.294 5.294 8 C -0.094 4.094 9 C 0.073 3.927 10 H 0.110 0.890 11 O -0.355 6.355 12 C -0.107 4.107 13 N -0.262 5.262 14 C -0.107 4.107 15 C 0.082 3.918 16 C -0.561 4.561 17 H 0.080 0.920 18 C -0.198 4.198 19 N -0.575 5.575 20 Si 0.794 3.206 21 H -0.193 1.193 22 H -0.208 1.208 23 H -0.193 1.193 24 C -0.030 4.030 25 C -0.308 4.308 26 C -0.146 4.146 27 N -0.162 5.162 28 N -0.162 5.162 29 C -0.051 4.051 30 H 0.116 0.884 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.043 0.957 38 H 0.093 0.907 39 H 0.164 0.836 40 H 0.058 0.942 41 H 0.098 0.902 42 H 0.225 0.775 43 H 0.084 0.916 44 H 0.046 0.954 45 H 0.097 0.903 46 H 0.072 0.928 47 H 0.027 0.973 48 H 0.021 0.979 49 H -0.023 1.023 50 H 0.073 0.927 51 H 0.174 0.826 52 H 0.219 0.781 53 H 0.099 0.901 54 H 0.111 0.889 55 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 20.496 21.115 2.518 29.535 hybrid contribution -0.212 -1.888 0.415 1.945 sum 20.284 19.227 2.934 28.102 Atomic orbital electron populations 1.22047 0.93493 1.04714 1.00198 1.20890 0.96637 0.94934 0.95899 1.21933 1.00887 0.96296 1.01499 1.19877 0.85851 0.96265 1.00920 0.89375 1.21846 0.87877 0.94295 1.01191 1.60640 1.10007 1.13785 1.45003 1.22545 0.94993 0.89833 1.01987 1.21668 0.90728 0.90105 0.90167 0.88982 1.86555 1.73343 1.59280 1.16320 1.22867 0.88750 0.98552 1.00554 1.61935 1.09433 1.21020 1.33769 1.22221 1.00680 0.99043 0.88788 1.19384 0.95239 0.83994 0.93232 1.21448 0.92736 0.93012 1.48938 0.92021 1.25922 1.03834 0.95067 0.94988 1.70077 1.37756 0.98463 1.51243 0.85437 0.79021 0.77064 0.79107 1.19340 1.20847 1.19267 1.21187 0.94972 1.00037 0.86825 1.21443 0.91780 1.17353 1.00197 1.24282 0.99788 0.98968 0.91557 1.77320 0.96270 1.26723 1.15853 1.48752 1.03936 1.56409 1.07103 1.22099 1.00913 1.04207 0.77911 0.88427 0.93755 0.94566 0.91157 0.92980 0.92517 0.93413 0.95686 0.90675 0.83579 0.94177 0.90198 0.77475 0.91553 0.95357 0.90279 0.92842 0.97260 0.97855 1.02345 0.92715 0.82595 0.78063 0.90131 0.88895 0.87704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 8.22 71.98 0.59 -1.69 16 2 C -0.06 -0.87 2.09 -10.79 -0.02 -0.89 16 3 C -0.15 -2.04 8.82 71.98 0.63 -1.40 16 4 C -0.01 -0.11 1.92 -11.54 -0.02 -0.13 16 5 H 0.09 0.96 6.93 -2.39 -0.02 0.95 16 6 C 0.08 1.05 5.02 86.30 0.43 1.48 16 7 N -0.66 -9.58 3.09 -513.90 -1.59 -11.17 16 8 C 0.04 0.64 5.32 86.30 0.46 1.10 16 9 C 0.13 3.22 3.02 30.59 0.09 3.31 16 10 H 0.09 2.21 6.55 -2.39 -0.02 2.20 16 11 O -0.55 -14.96 13.15 -148.98 -1.96 -16.92 16 12 C 0.02 0.71 4.62 86.30 0.40 1.11 16 13 N -0.54 -22.73 4.62 -927.04 -4.28 -27.01 16 14 C 0.04 1.56 9.14 127.69 1.17 2.72 16 15 C 0.21 11.07 4.72 85.56 0.40 11.47 16 16 C -0.52 -29.84 8.46 25.60 0.22 -29.63 16 17 H 0.06 3.47 7.12 -2.91 -0.02 3.45 16 18 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 19 N -0.93 -56.34 13.29 21.45 0.28 -56.05 16 20 Si 0.97 44.43 29.54 68.60 2.03 46.46 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 23 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 24 C 0.10 1.55 4.92 41.40 0.20 1.75 16 25 C -0.28 -4.50 8.61 21.99 0.19 -4.31 16 26 C 0.04 0.67 12.03 85.24 1.03 1.69 16 27 N -0.34 -7.19 12.58 -57.02 -0.72 -7.91 16 28 N -0.38 -6.56 4.01 -356.01 -1.43 -7.99 16 29 C 0.09 0.92 11.27 127.77 1.44 2.36 16 30 H 0.10 1.77 5.78 -2.39 -0.01 1.76 16 31 H 0.04 0.67 8.12 -2.39 -0.02 0.65 16 32 H 0.04 0.59 8.13 -2.39 -0.02 0.57 16 33 H 0.07 0.99 7.57 -2.39 -0.02 0.98 16 34 H 0.05 0.79 6.01 -2.39 -0.01 0.77 16 35 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 36 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.02 0.36 8.14 -2.39 -0.02 0.34 16 38 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.35 4.54 8.73 -89.69 -0.78 3.75 16 40 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.38 8.71 9.05 -74.05 -0.67 8.04 16 43 H 0.07 2.18 7.93 -2.39 -0.02 2.16 16 44 H 0.03 0.91 8.12 -2.39 -0.02 0.89 16 45 H 0.08 2.48 6.47 -2.38 -0.02 2.46 16 46 H 0.05 2.24 6.76 -2.39 -0.02 2.22 16 47 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 48 H 0.00 0.19 7.93 -2.39 -0.02 0.17 16 49 H -0.04 -2.38 8.12 -2.39 -0.02 -2.40 16 50 H 0.26 14.99 8.31 -92.70 -0.77 14.22 16 51 H 0.16 2.09 7.54 -2.91 -0.02 2.06 16 52 H 0.20 2.23 8.06 -2.91 -0.02 2.20 16 53 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 54 H 0.09 0.87 8.14 -2.39 -0.02 0.86 16 55 H 0.10 0.65 6.98 -2.38 -0.02 0.63 16 Total: -1.00 -70.36 428.67 -0.58 -70.94 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -0.59 Total: 20.25 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: 7.67 Total: -10.60 kcal Atomic # 7 Polarization: -102.40 SS G_CDS: -7.73 Total: -110.13 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -1.96 Total: -16.92 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -70.36 -0.58 -70.94 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591763436.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.276 kcal (2) G-P(sol) polarization free energy of solvation -70.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds