Wall clock time and date at job start Tue Mar 31 2020 22:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46503 * 120.00437 * 2 1 4 4 C 1.50701 * 109.47282 * 270.00657 * 3 2 1 5 5 H 1.07997 * 119.99859 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99957 * 179.97438 * 4 3 2 7 7 N 1.31519 * 120.00260 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 120.00112 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47052 * 60.00053 * 8 6 4 10 10 H 1.48494 * 109.47405 * 180.02562 * 8 6 4 11 11 H 1.48508 * 109.47233 * 300.00360 * 8 6 4 12 12 C 1.34779 * 120.00172 * 180.02562 * 2 1 3 13 13 O 1.21278 * 120.00435 * 179.97438 * 12 2 1 14 14 C 1.50705 * 119.99690 * 359.97438 * 12 2 1 15 15 C 1.52992 * 109.47124 * 180.02562 * 14 12 2 16 16 N 1.46896 * 109.47379 * 179.97438 * 15 14 12 17 17 C 1.46850 * 111.00472 * 170.00090 * 16 15 14 18 18 C 1.53036 * 109.52384 * 185.84130 * 17 16 15 19 19 C 1.53114 * 109.27799 * 300.81924 * 18 17 16 20 20 C 1.52996 * 109.52435 * 177.62514 * 19 18 17 21 21 H 1.09003 * 109.48136 * 300.00386 * 20 19 18 22 22 C 1.53088 * 109.48309 * 179.97438 * 20 19 18 23 23 C 1.53183 * 109.16378 * 182.42137 * 22 20 19 24 24 C 1.53179 * 109.04577 * 56.96213 * 23 22 20 25 25 C 1.53093 * 109.15996 * 303.02543 * 24 23 22 26 26 O 1.42899 * 109.41710 * 57.61181 * 25 24 23 27 27 C 1.53120 * 109.16161 * 57.65854 * 19 18 17 28 28 C 1.46846 * 110.99998 * 294.21502 * 16 15 14 29 29 H 1.09007 * 109.46968 * 270.00237 * 1 2 3 30 30 H 1.09005 * 109.47150 * 29.99201 * 1 2 3 31 31 H 1.08997 * 109.47805 * 149.99930 * 1 2 3 32 32 H 1.09004 * 109.46676 * 30.00204 * 3 2 1 33 33 H 1.08997 * 109.47548 * 149.99980 * 3 2 1 34 34 H 0.97002 * 119.99944 * 180.02562 * 7 6 4 35 35 H 1.08998 * 109.46803 * 59.99979 * 14 12 2 36 36 H 1.08993 * 109.46719 * 300.00348 * 14 12 2 37 37 H 1.09002 * 109.47096 * 59.99823 * 15 14 12 38 38 H 1.09004 * 109.47110 * 300.00010 * 15 14 12 39 39 H 1.08995 * 109.45831 * 65.81919 * 17 16 15 40 40 H 1.08998 * 109.45719 * 305.85769 * 17 16 15 41 41 H 1.09004 * 109.50109 * 60.76189 * 18 17 16 42 42 H 1.08996 * 109.49818 * 180.83779 * 18 17 16 43 43 H 1.09002 * 109.52325 * 297.75085 * 19 18 17 44 44 H 1.09000 * 109.52177 * 302.31384 * 22 20 19 45 45 H 1.08997 * 109.52466 * 62.50628 * 22 20 19 46 46 H 1.09005 * 109.53025 * 297.09796 * 23 22 20 47 47 H 1.08996 * 109.61717 * 176.88225 * 23 22 20 48 48 H 1.09002 * 109.51794 * 183.12432 * 24 23 22 49 49 H 1.08998 * 109.57291 * 62.96274 * 24 23 22 50 50 H 1.08997 * 109.48434 * 297.62468 * 25 24 23 51 51 H 1.09010 * 109.48662 * 177.60013 * 25 24 23 52 52 H 1.08998 * 109.50493 * 62.28140 * 27 19 18 53 53 H 1.09005 * 109.50270 * 182.40711 * 27 19 18 54 54 H 1.08993 * 109.46639 * 54.13954 * 28 16 15 55 55 H 1.09010 * 109.45973 * 294.17120 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1260 2.8780 -1.6727 7 7 3.5535 3.6180 -0.6731 8 14 3.4379 3.4170 -3.4338 9 1 2.1405 3.5939 -4.1345 10 1 4.1803 4.7030 -3.4338 11 1 4.2411 2.3822 -4.1334 12 6 2.1389 -1.1672 -0.0005 13 8 3.3516 -1.1673 -0.0010 14 6 1.3853 -2.4723 -0.0005 15 6 2.3795 -3.6352 -0.0005 16 7 1.6450 -4.9074 0.0001 17 6 2.5510 -6.0383 -0.2379 18 6 1.7360 -7.3263 -0.3754 19 6 0.9308 -7.5544 0.9068 20 6 0.0686 -8.8089 0.7528 21 1 -0.6147 -8.6796 -0.0866 22 6 -0.7355 -9.0363 2.0355 23 6 -1.5496 -10.3265 1.8965 24 6 -0.5980 -11.4878 1.5930 25 6 0.2006 -11.1654 0.3273 26 8 0.9099 -9.9388 0.5126 27 6 0.0310 -6.3411 1.1576 28 6 0.8953 -5.0816 1.2507 29 1 -0.3633 0.0000 1.0277 30 1 -0.3634 0.8901 -0.5137 31 1 -0.3634 -0.8899 -0.5138 32 1 1.6084 2.0284 0.5139 33 1 3.1499 1.1384 0.5138 34 1 4.0297 4.4443 -0.8503 35 1 0.7583 -2.5298 -0.8903 36 1 0.7590 -2.5302 0.8896 37 1 3.0062 -3.5775 0.8895 38 1 3.0061 -3.5775 -0.8905 39 1 3.2414 -6.1330 0.6001 40 1 3.1145 -5.8654 -1.1548 41 1 1.0550 -7.2374 -1.2219 42 1 2.4098 -8.1677 -0.5372 43 1 1.6129 -7.6821 1.7474 44 1 -0.0541 -9.1252 2.8816 45 1 -1.4100 -8.1954 2.1965 46 1 -2.2658 -10.2194 1.0817 47 1 -2.0823 -10.5250 2.8264 48 1 -1.1743 -12.3998 1.4377 49 1 0.0864 -11.6273 2.4298 50 1 -0.4811 -11.0670 -0.5175 51 1 0.9099 -11.9694 0.1302 52 1 -0.6768 -6.2368 0.3353 53 1 -0.5134 -6.4788 2.0920 54 1 0.2564 -4.2140 1.4151 55 1 1.5936 -5.1810 2.0819 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595782955.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:54 Heat of formation + Delta-G solvation = -121.898787 kcal Electronic energy + Delta-G solvation = -29962.510296 eV Core-core repulsion = 25997.406682 eV Total energy + Delta-G solvation = -3965.103614 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.02503 -40.59047 -39.35996 -36.63054 -35.70581 -34.72396 -34.54494 -32.64284 -31.62392 -30.68588 -29.43499 -27.34350 -26.71329 -25.35536 -24.87916 -24.05282 -23.18339 -22.15731 -21.14393 -20.55720 -19.86521 -18.69729 -18.05750 -17.19678 -17.13754 -17.08378 -16.71299 -16.33501 -16.17028 -15.73633 -15.55578 -15.50145 -15.17976 -14.84345 -14.61545 -14.41267 -14.30760 -13.97975 -13.85090 -13.65429 -13.50976 -13.45384 -13.30857 -13.19163 -13.01227 -12.82787 -12.67443 -12.47312 -12.28247 -12.18973 -12.12268 -12.10547 -11.97110 -11.83779 -11.71760 -11.49156 -11.42640 -11.11013 -10.94485 -10.64385 -10.59143 -10.26525 -9.40739 -9.31791 -8.22402 -6.37551 1.36245 1.40867 1.48111 1.85380 2.29306 2.42667 2.83589 2.97765 3.06844 3.63603 3.79955 3.83437 3.92679 3.95535 4.01622 4.07541 4.10552 4.18033 4.26449 4.33695 4.35610 4.42581 4.44743 4.50050 4.59647 4.64597 4.68834 4.73892 4.74462 4.80739 4.84055 4.90366 4.92424 4.95998 4.97444 5.01754 5.02714 5.06498 5.08839 5.11452 5.14607 5.22231 5.23163 5.27449 5.32621 5.40495 5.52083 5.56440 5.84902 6.04917 6.06338 6.17454 6.39155 6.69665 6.80600 7.28240 7.49865 8.84312 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.029787 B = 0.001774 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.777246 B =15779.743680 C =16166.897507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.611 5.611 3 C 0.258 3.742 4 C -0.544 4.544 5 H 0.053 0.947 6 C 0.006 3.994 7 N -0.928 5.928 8 Si 0.968 3.032 9 H -0.259 1.259 10 H -0.278 1.278 11 H -0.278 1.278 12 C 0.493 3.507 13 O -0.603 6.603 14 C -0.113 4.113 15 C 0.080 3.920 16 N -0.535 5.535 17 C 0.054 3.946 18 C -0.096 4.096 19 C -0.077 4.077 20 C 0.099 3.901 21 H 0.060 0.940 22 C -0.150 4.150 23 C -0.124 4.124 24 C -0.155 4.155 25 C 0.055 3.945 26 O -0.400 6.400 27 C -0.101 4.101 28 C 0.046 3.954 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.096 0.904 32 H 0.024 0.976 33 H -0.004 1.004 34 H 0.267 0.733 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.022 0.978 38 H 0.061 0.939 39 H 0.025 0.975 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.088 0.912 46 H 0.068 0.932 47 H 0.074 0.926 48 H 0.085 0.915 49 H 0.062 0.938 50 H 0.054 0.946 51 H 0.098 0.902 52 H 0.078 0.922 53 H 0.088 0.912 54 H 0.090 0.910 55 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.418 -30.639 4.885 34.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.342 5.342 3 C 0.136 3.864 4 C -0.583 4.583 5 H 0.072 0.928 6 C -0.193 4.193 7 N -0.568 5.568 8 Si 0.793 3.207 9 H -0.183 1.183 10 H -0.203 1.203 11 H -0.204 1.204 12 C 0.282 3.718 13 O -0.485 6.485 14 C -0.153 4.153 15 C -0.048 4.048 16 N -0.260 5.260 17 C -0.074 4.074 18 C -0.134 4.134 19 C -0.096 4.096 20 C 0.042 3.958 21 H 0.078 0.922 22 C -0.188 4.188 23 C -0.161 4.161 24 C -0.193 4.193 25 C -0.021 4.021 26 O -0.320 6.320 27 C -0.138 4.138 28 C -0.081 4.081 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.114 0.886 32 H 0.042 0.958 33 H 0.014 0.986 34 H 0.076 0.924 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.040 0.960 38 H 0.079 0.921 39 H 0.043 0.957 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.106 0.894 46 H 0.087 0.913 47 H 0.092 0.908 48 H 0.104 0.896 49 H 0.081 0.919 50 H 0.073 0.927 51 H 0.116 0.884 52 H 0.097 0.903 53 H 0.106 0.894 54 H 0.109 0.891 55 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -14.874 -30.429 4.552 34.174 hybrid contribution 1.205 0.764 0.011 1.427 sum -13.670 -29.665 4.563 32.980 Atomic orbital electron populations 1.21947 0.77710 1.04083 1.02632 1.48204 1.08522 1.06348 1.71172 1.18748 0.91070 0.80560 0.95997 1.21692 1.36952 1.06558 0.93079 0.92831 1.25887 0.94886 0.96435 1.02085 1.70050 1.38886 1.14771 1.33106 0.85458 0.78886 0.77325 0.79079 1.18336 1.20287 1.20402 1.21415 0.87785 0.86788 0.75769 1.90632 1.16868 1.88300 1.52721 1.21551 0.98788 0.88655 1.06309 1.21592 0.94350 0.88337 1.00549 1.61964 1.27284 1.01019 1.35701 1.22111 0.94049 0.90887 1.00317 1.21460 0.98841 0.95233 0.97893 1.21165 0.97115 0.93199 0.98118 1.22110 0.91525 0.85402 0.96754 0.92177 1.22249 0.99487 0.99155 0.97882 1.21615 0.97692 0.94158 1.02647 1.22182 0.99026 0.99431 0.98647 1.22698 0.96438 0.86286 0.96726 1.87902 1.34878 1.16814 1.92403 1.21609 0.97343 0.91550 1.03321 1.22280 0.96839 0.99721 0.89270 0.91035 0.91705 0.88567 0.95838 0.98613 0.92409 0.86558 0.86576 0.95971 0.92053 0.95683 0.91175 0.91247 0.91232 0.91888 0.91960 0.89387 0.91325 0.90750 0.89604 0.91900 0.92738 0.88394 0.90320 0.89375 0.89144 0.95585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.30 10.24 127.77 1.31 3.61 16 2 N -0.61 -26.30 2.86 -851.12 -2.43 -28.73 16 3 C 0.26 14.25 5.16 85.63 0.44 14.69 16 4 C -0.54 -32.03 9.39 25.60 0.24 -31.79 16 5 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 6 C 0.01 0.35 5.46 84.65 0.46 0.81 16 7 N -0.93 -57.06 13.29 21.45 0.28 -56.77 16 8 Si 0.97 45.58 29.54 68.60 2.03 47.60 16 9 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 12 C 0.49 20.82 7.67 87.66 0.67 21.49 16 13 O -0.60 -32.14 15.56 -3.02 -0.05 -32.19 16 14 C -0.11 -3.16 4.18 29.85 0.12 -3.04 16 15 C 0.08 2.32 4.25 86.30 0.37 2.69 16 16 N -0.53 -12.05 4.66 -896.37 -4.17 -16.22 16 17 C 0.05 1.18 5.46 86.32 0.47 1.65 16 18 C -0.10 -1.75 5.20 30.64 0.16 -1.59 16 19 C -0.08 -1.21 2.05 -10.72 -0.02 -1.23 16 20 C 0.10 1.39 2.23 30.62 0.07 1.46 16 21 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 22 C -0.15 -1.65 5.00 30.68 0.15 -1.50 16 23 C -0.12 -1.12 6.03 30.72 0.19 -0.94 16 24 C -0.16 -1.46 6.14 30.69 0.19 -1.28 16 25 C 0.05 0.64 6.84 72.01 0.49 1.13 16 26 O -0.40 -6.83 9.79 -148.98 -1.46 -8.29 16 27 C -0.10 -1.36 4.96 30.65 0.15 -1.21 16 28 C 0.05 0.83 5.29 86.33 0.46 1.29 16 29 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 30 H 0.06 2.03 8.07 -2.38 -0.02 2.01 16 31 H 0.10 2.12 6.44 -2.39 -0.02 2.10 16 32 H 0.02 1.31 8.07 -2.38 -0.02 1.29 16 33 H 0.00 -0.27 7.42 -2.39 -0.02 -0.29 16 34 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 35 H 0.12 2.84 7.40 -2.39 -0.02 2.82 16 36 H 0.12 2.52 6.39 -2.39 -0.02 2.51 16 37 H 0.02 0.72 8.08 -2.39 -0.02 0.70 16 38 H 0.06 2.03 7.95 -2.39 -0.02 2.01 16 39 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.07 1.59 8.02 -2.39 -0.02 1.57 16 41 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.07 1.31 7.77 -2.39 -0.02 1.29 16 43 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.09 0.76 6.64 -2.39 -0.02 0.74 16 46 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 47 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 48 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 49 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 51 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 52 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 53 H 0.09 0.89 6.64 -2.38 -0.02 0.87 16 54 H 0.09 1.44 6.21 -2.39 -0.01 1.42 16 55 H 0.03 0.51 8.14 -2.38 -0.02 0.49 16 Total: -1.00 -76.04 417.77 0.95 -75.09 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: 0.83 Total: 13.25 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: 5.92 Total: 6.26 kcal Atomic # 7 Polarization: -95.40 SS G_CDS: -6.32 Total: -101.72 kcal Atomic # 8 Polarization: -38.97 SS G_CDS: -1.50 Total: -40.47 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Total: -76.04 0.95 -75.09 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595782955.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.813 kcal (2) G-P(sol) polarization free energy of solvation -76.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds