Wall clock time and date at job start Tue Mar 31 2020 22:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46500 * 119.99652 * 2 1 4 4 C 1.50706 * 109.47299 * 269.99799 * 3 2 1 5 5 H 1.07998 * 119.99503 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.00434 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99826 * 359.72891 * 6 4 3 8 8 Si 1.86800 * 120.00406 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47364 * 179.72558 * 8 6 4 10 10 H 1.48508 * 109.46883 * 299.72681 * 8 6 4 11 11 H 1.48497 * 109.46870 * 59.72491 * 8 6 4 12 12 C 1.34771 * 119.99930 * 180.02562 * 2 1 3 13 13 O 1.21290 * 119.99935 * 179.97438 * 12 2 1 14 14 C 1.50703 * 120.00174 * 359.97438 * 12 2 1 15 15 C 1.53004 * 109.46898 * 180.02562 * 14 12 2 16 16 N 1.46902 * 109.46652 * 180.02562 * 15 14 12 17 17 C 1.46850 * 111.00173 * 45.79134 * 16 15 14 18 18 C 1.53033 * 109.52235 * 185.83896 * 17 16 15 19 19 C 1.53130 * 109.27802 * 300.81759 * 18 17 16 20 20 C 1.52995 * 109.57261 * 177.59534 * 19 18 17 21 21 H 1.09002 * 109.47664 * 300.26156 * 20 19 18 22 22 C 1.53089 * 109.48570 * 60.28665 * 20 19 18 23 23 C 1.53174 * 109.16666 * 177.59150 * 22 20 19 24 24 C 1.53175 * 109.03426 * 303.02273 * 23 22 20 25 25 C 1.53089 * 109.16697 * 56.97720 * 24 23 22 26 26 O 1.42899 * 109.41407 * 302.39126 * 25 24 23 27 27 C 1.53118 * 109.15962 * 57.65470 * 19 18 17 28 28 C 1.46849 * 110.99796 * 169.99893 * 16 15 14 29 29 H 1.08996 * 109.47100 * 89.99857 * 1 2 3 30 30 H 1.09001 * 109.46499 * 210.00278 * 1 2 3 31 31 H 1.09000 * 109.46902 * 329.99566 * 1 2 3 32 32 H 1.09004 * 109.47078 * 150.00561 * 3 2 1 33 33 H 1.08993 * 109.47364 * 30.00332 * 3 2 1 34 34 H 0.97000 * 120.00236 * 0.27947 * 7 6 4 35 35 H 1.08993 * 109.46937 * 300.00202 * 14 12 2 36 36 H 1.08994 * 109.46887 * 60.00577 * 14 12 2 37 37 H 1.09002 * 109.47115 * 299.99650 * 15 14 12 38 38 H 1.08999 * 109.47475 * 60.00321 * 15 14 12 39 39 H 1.09000 * 109.46233 * 305.85517 * 17 16 15 40 40 H 1.09000 * 109.45851 * 65.81845 * 17 16 15 41 41 H 1.09001 * 109.50312 * 180.88083 * 18 17 16 42 42 H 1.08997 * 109.50842 * 60.75730 * 18 17 16 43 43 H 1.08996 * 109.52043 * 297.75265 * 19 18 17 44 44 H 1.09009 * 109.51769 * 297.49514 * 22 20 19 45 45 H 1.09000 * 109.52043 * 57.61983 * 22 20 19 46 46 H 1.09000 * 109.54229 * 62.88114 * 23 22 20 47 47 H 1.08994 * 109.54331 * 183.06221 * 23 22 20 48 48 H 1.09007 * 109.52302 * 176.88842 * 24 23 22 49 49 H 1.09005 * 109.52083 * 297.07237 * 24 23 22 50 50 H 1.09000 * 109.48057 * 62.37722 * 25 24 23 51 51 H 1.09004 * 109.48008 * 182.41047 * 25 24 23 52 52 H 1.08992 * 109.50370 * 182.40242 * 27 19 18 53 53 H 1.09008 * 109.50024 * 62.28674 * 27 19 18 54 54 H 1.09006 * 109.46416 * 294.18100 * 28 16 15 55 55 H 1.09004 * 109.46138 * 54.15545 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7039 -1.4209 5 1 2.0975 1.0962 -2.2417 6 6 3.1269 2.8775 -1.6728 7 7 3.5499 3.6201 -0.6732 8 14 3.4376 3.4171 -3.4340 9 1 4.1749 4.7062 -3.4340 10 1 4.2450 2.3850 -4.1328 11 1 2.1400 3.5890 -4.1352 12 6 2.1389 -1.1672 -0.0005 13 8 3.3518 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 6 2.3798 -3.6352 -0.0005 16 7 1.6452 -4.9074 -0.0011 17 6 0.5545 -4.8849 -0.9842 18 6 -0.2758 -6.1640 -0.8561 19 6 0.6262 -7.3783 -1.0945 20 6 -0.1839 -8.6628 -0.9090 21 1 -0.5840 -8.6970 0.1043 22 6 -1.3379 -8.6884 -1.9147 23 6 -2.1077 -10.0040 -1.7634 24 6 -1.1395 -11.1747 -1.9596 25 6 0.0068 -11.0531 -0.9522 26 8 0.6609 -9.7946 -1.1266 27 6 1.7807 -7.3517 -0.0891 28 6 2.5514 -6.0381 -0.2393 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3632 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 3.1500 1.1385 0.5138 33 1 1.6085 2.0284 0.5138 34 1 3.3883 3.3401 0.2413 35 1 0.7591 -2.5302 0.8896 36 1 0.7585 -2.5298 -0.8903 37 1 3.0064 -3.5774 -0.8906 38 1 3.0064 -3.5775 0.8895 39 1 -0.0817 -4.0190 -0.8010 40 1 0.9725 -4.8222 -1.9889 41 1 -1.0758 -6.1541 -1.5964 42 1 -0.7053 -6.2205 0.1440 43 1 1.0251 -7.3423 -2.1082 44 1 -2.0077 -7.8502 -1.7219 45 1 -0.9407 -8.6120 -2.9268 46 1 -2.5468 -10.0571 -0.7672 47 1 -2.8974 -10.0526 -2.5131 48 1 -1.6674 -12.1148 -1.7990 49 1 -0.7382 -11.1496 -2.9727 50 1 -0.3908 -11.1189 0.0606 51 1 0.7213 -11.8599 -1.1155 52 1 2.4499 -8.1903 -0.2811 53 1 1.3835 -7.4268 0.9233 54 1 2.9601 -5.9700 -1.2475 55 1 3.3654 -6.0099 0.4851 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595782957.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:59 Heat of formation + Delta-G solvation = -123.355027 kcal Electronic energy + Delta-G solvation = -30114.085858 eV Core-core repulsion = 26148.919097 eV Total energy + Delta-G solvation = -3965.166761 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.12738 -40.67062 -39.42070 -36.84581 -35.79036 -34.96514 -34.55858 -32.70412 -31.58962 -30.62365 -29.17012 -27.39769 -26.70026 -25.37212 -24.92905 -24.27113 -23.24029 -22.16996 -21.15735 -20.57440 -20.08448 -19.08475 -18.21179 -17.30748 -17.14642 -17.03818 -16.71126 -16.27243 -15.99114 -15.70019 -15.58204 -15.52288 -15.32323 -15.02301 -14.72871 -14.53307 -14.34274 -13.97327 -13.93622 -13.75041 -13.59372 -13.54231 -13.39353 -13.24764 -13.07588 -12.91280 -12.62886 -12.44437 -12.37256 -12.18910 -12.09410 -12.02672 -11.97246 -11.85062 -11.50431 -11.44735 -11.21978 -11.13004 -10.95669 -10.71127 -10.63561 -10.27704 -9.49266 -9.34647 -8.71384 -6.47300 1.47264 1.56598 1.73129 1.76486 2.20656 2.52103 2.82316 2.91098 3.07806 3.62016 3.70717 3.76694 3.86342 3.93845 3.99903 4.02694 4.06514 4.14025 4.22881 4.29695 4.31387 4.33485 4.41428 4.46626 4.53533 4.58673 4.64573 4.65912 4.69866 4.73175 4.77606 4.82336 4.88483 4.89538 4.90040 4.91825 4.94830 4.96680 4.99298 5.07296 5.08711 5.13453 5.20956 5.25213 5.30947 5.39176 5.50026 5.52992 5.79973 6.00107 6.10948 6.13040 6.38056 6.42552 6.65088 7.26344 7.38959 8.63365 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.022919 B = 0.001860 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.399045 B =15049.051403 C =15236.042548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.608 5.608 3 C 0.243 3.757 4 C -0.617 4.617 5 H 0.044 0.956 6 C -0.034 4.034 7 N -0.930 5.930 8 Si 1.119 2.881 9 H -0.278 1.278 10 H -0.281 1.281 11 H -0.260 1.260 12 C 0.494 3.506 13 O -0.602 6.602 14 C -0.120 4.120 15 C 0.080 3.920 16 N -0.532 5.532 17 C 0.040 3.960 18 C -0.101 4.101 19 C -0.078 4.078 20 C 0.100 3.900 21 H 0.062 0.938 22 C -0.151 4.151 23 C -0.123 4.123 24 C -0.155 4.155 25 C 0.055 3.945 26 O -0.400 6.400 27 C -0.096 4.096 28 C 0.053 3.947 29 H 0.058 0.942 30 H 0.105 0.895 31 H 0.069 0.931 32 H -0.009 1.009 33 H 0.020 0.980 34 H 0.255 0.745 35 H 0.127 0.873 36 H 0.114 0.886 37 H 0.016 0.984 38 H 0.067 0.933 39 H 0.096 0.904 40 H 0.024 0.976 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.061 0.939 44 H 0.088 0.912 45 H 0.061 0.939 46 H 0.069 0.931 47 H 0.073 0.927 48 H 0.086 0.914 49 H 0.062 0.938 50 H 0.055 0.945 51 H 0.098 0.902 52 H 0.069 0.931 53 H 0.070 0.930 54 H 0.023 0.977 55 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.707 -30.826 -0.357 35.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.339 5.339 3 C 0.121 3.879 4 C -0.655 4.655 5 H 0.063 0.937 6 C -0.232 4.232 7 N -0.567 5.567 8 Si 0.939 3.061 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.185 1.185 12 C 0.283 3.717 13 O -0.484 6.484 14 C -0.159 4.159 15 C -0.048 4.048 16 N -0.257 5.257 17 C -0.087 4.087 18 C -0.138 4.138 19 C -0.097 4.097 20 C 0.043 3.957 21 H 0.079 0.921 22 C -0.188 4.188 23 C -0.161 4.161 24 C -0.193 4.193 25 C -0.021 4.021 26 O -0.320 6.320 27 C -0.134 4.134 28 C -0.075 4.075 29 H 0.077 0.923 30 H 0.124 0.876 31 H 0.088 0.912 32 H 0.009 0.991 33 H 0.038 0.962 34 H 0.064 0.936 35 H 0.145 0.855 36 H 0.131 0.869 37 H 0.035 0.965 38 H 0.086 0.914 39 H 0.114 0.886 40 H 0.042 0.958 41 H 0.106 0.894 42 H 0.098 0.902 43 H 0.080 0.920 44 H 0.106 0.894 45 H 0.079 0.921 46 H 0.088 0.912 47 H 0.092 0.908 48 H 0.104 0.896 49 H 0.080 0.920 50 H 0.073 0.927 51 H 0.116 0.884 52 H 0.088 0.912 53 H 0.089 0.911 54 H 0.041 0.959 55 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.460 -29.671 -0.843 33.468 hybrid contribution 0.096 -0.712 0.341 0.796 sum -15.364 -30.383 -0.502 34.051 Atomic orbital electron populations 1.21960 0.77447 1.04253 1.02542 1.48043 1.08545 1.05959 1.71333 1.18909 0.90989 0.81556 0.96421 1.22532 1.40482 1.09626 0.92902 0.93737 1.27397 0.92657 0.93647 1.09469 1.70926 1.45631 1.40195 0.99984 0.82924 0.77721 0.76063 0.69353 1.20344 1.20688 1.18468 1.21442 0.87801 0.86753 0.75679 1.90640 1.16884 1.88261 1.52591 1.21745 0.98955 0.88747 1.06490 1.21632 0.94718 0.87946 1.00542 1.62111 1.11851 1.01637 1.50119 1.22379 0.93526 1.00083 0.92752 1.21615 0.97238 0.91453 1.03519 1.21175 0.95908 0.93240 0.99380 1.22105 0.90276 0.85376 0.97984 0.92050 1.22254 0.97697 0.99124 0.99757 1.21610 0.97907 0.93875 1.02697 1.22185 0.97286 0.99747 1.00096 1.22699 0.95585 0.85600 0.98245 1.87903 1.38112 1.14445 1.91561 1.21455 0.97028 0.95135 0.99735 1.22129 0.95159 0.90983 0.99187 0.92349 0.87647 0.91215 0.99052 0.96175 0.93569 0.85505 0.86852 0.96549 0.91415 0.88584 0.95756 0.89398 0.90184 0.92049 0.89393 0.92061 0.91246 0.90784 0.89558 0.91967 0.92653 0.88385 0.91198 0.91080 0.95856 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.32 10.29 127.77 1.31 3.64 16 2 N -0.61 -26.03 2.86 -851.11 -2.43 -28.46 16 3 C 0.24 13.30 4.52 85.64 0.39 13.69 16 4 C -0.62 -36.56 9.39 25.60 0.24 -36.32 16 5 H 0.04 2.63 7.81 -2.91 -0.02 2.60 16 6 C -0.03 -2.00 5.46 84.65 0.46 -1.54 16 7 N -0.93 -58.75 13.65 21.45 0.29 -58.45 16 8 Si 1.12 51.90 29.90 68.60 2.05 53.95 16 9 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 12 C 0.49 20.78 7.67 87.66 0.67 21.45 16 13 O -0.60 -32.07 15.56 -3.06 -0.05 -32.12 16 14 C -0.12 -3.29 3.50 29.85 0.10 -3.19 16 15 C 0.08 2.31 4.56 86.30 0.39 2.70 16 16 N -0.53 -11.97 4.81 -896.33 -4.31 -16.28 16 17 C 0.04 0.73 4.85 86.32 0.42 1.15 16 18 C -0.10 -1.38 4.96 30.65 0.15 -1.22 16 19 C -0.08 -1.24 2.05 -10.71 -0.02 -1.26 16 20 C 0.10 1.40 2.23 30.62 0.07 1.47 16 21 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 22 C -0.15 -1.70 5.00 30.68 0.15 -1.54 16 23 C -0.12 -1.14 6.03 30.71 0.19 -0.95 16 24 C -0.16 -1.49 6.14 30.68 0.19 -1.30 16 25 C 0.06 0.64 6.84 72.01 0.49 1.13 16 26 O -0.40 -6.85 9.79 -148.98 -1.46 -8.31 16 27 C -0.10 -1.72 5.20 30.65 0.16 -1.57 16 28 C 0.05 1.16 5.42 86.32 0.47 1.63 16 29 H 0.06 1.62 8.14 -2.39 -0.02 1.61 16 30 H 0.11 2.08 6.44 -2.39 -0.02 2.06 16 31 H 0.07 1.99 7.89 -2.39 -0.02 1.97 16 32 H -0.01 -0.53 7.29 -2.39 -0.02 -0.55 16 33 H 0.02 1.10 7.76 -2.39 -0.02 1.08 16 34 H 0.25 16.28 7.22 -92.71 -0.67 15.61 16 35 H 0.13 2.73 7.40 -2.39 -0.02 2.72 16 36 H 0.11 2.62 6.17 -2.39 -0.01 2.60 16 37 H 0.02 0.55 8.04 -2.39 -0.02 0.53 16 38 H 0.07 2.16 8.10 -2.39 -0.02 2.14 16 39 H 0.10 1.51 5.81 -2.39 -0.01 1.50 16 40 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.09 0.91 6.64 -2.39 -0.02 0.90 16 42 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.09 0.78 6.64 -2.38 -0.02 0.76 16 45 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 48 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 49 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 50 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 51 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 52 H 0.07 1.31 7.76 -2.39 -0.02 1.29 16 53 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 54 H 0.02 0.55 8.14 -2.38 -0.02 0.53 16 55 H 0.07 1.60 8.12 -2.39 -0.02 1.58 16 Total: -1.00 -78.44 415.09 0.87 -77.57 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 0.93 Total: 14.12 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: 5.84 Total: -2.02 kcal Atomic # 7 Polarization: -96.75 SS G_CDS: -6.45 Total: -103.19 kcal Atomic # 8 Polarization: -38.92 SS G_CDS: -1.51 Total: -40.43 kcal Atomic # 14 Polarization: 51.90 SS G_CDS: 2.05 Total: 53.95 kcal Total: -78.44 0.87 -77.57 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595782957.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.788 kcal (2) G-P(sol) polarization free energy of solvation -78.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds