Wall clock time and date at job start Tue Mar 31 2020 22:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99936 * 2 1 4 4 C 1.50703 * 109.47126 * 89.99796 * 3 2 1 5 5 H 1.08002 * 119.99820 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.99889 * 180.02562 * 4 3 2 7 7 N 1.31518 * 120.00192 * 359.97438 * 6 4 3 8 8 Si 1.86806 * 120.00045 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.46637 * 59.99722 * 8 6 4 10 10 H 1.48498 * 109.47245 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47130 * 300.00125 * 8 6 4 12 12 C 1.34773 * 119.99969 * 179.71965 * 2 1 3 13 13 O 1.21283 * 120.00092 * 180.02562 * 12 2 1 14 14 C 1.50702 * 120.00430 * 0.02562 * 12 2 1 15 15 C 1.52991 * 109.47286 * 179.97438 * 14 12 2 16 16 N 1.46900 * 109.47036 * 179.97438 * 15 14 12 17 17 C 1.46842 * 111.00128 * 66.04548 * 16 15 14 18 18 C 1.53043 * 109.52631 * 185.83873 * 17 16 15 19 19 C 1.53110 * 109.27821 * 300.82189 * 18 17 16 20 20 C 1.53127 * 109.16356 * 57.65204 * 19 18 17 21 21 H 1.09003 * 109.49689 * 62.28140 * 20 19 18 22 22 C 1.52995 * 109.50752 * 182.36377 * 20 19 18 23 23 H 1.08999 * 109.47815 * 60.02238 * 22 20 19 24 24 C 1.53093 * 109.48204 * 300.00510 * 22 20 19 25 25 C 1.53175 * 109.16673 * 182.40961 * 24 22 20 26 26 C 1.53175 * 109.03788 * 56.97426 * 25 24 22 27 27 C 1.53096 * 109.16297 * 303.02322 * 26 25 24 28 28 O 1.42897 * 109.48333 * 180.02562 * 22 20 19 29 29 C 1.46847 * 111.00181 * 190.25925 * 16 15 14 30 30 H 1.08999 * 109.46892 * 90.00398 * 1 2 3 31 31 H 1.09000 * 109.46803 * 209.99571 * 1 2 3 32 32 H 1.09000 * 109.47214 * 330.00364 * 1 2 3 33 33 H 1.08994 * 109.47173 * 210.00167 * 3 2 1 34 34 H 1.09005 * 109.47077 * 330.00338 * 3 2 1 35 35 H 0.96995 * 119.99689 * 179.97438 * 7 6 4 36 36 H 1.09009 * 109.46564 * 299.99895 * 14 12 2 37 37 H 1.09001 * 109.47030 * 59.99569 * 14 12 2 38 38 H 1.08995 * 109.47398 * 299.99553 * 15 14 12 39 39 H 1.09001 * 109.47172 * 59.99982 * 15 14 12 40 40 H 1.09005 * 109.46493 * 305.85586 * 17 16 15 41 41 H 1.09002 * 109.46372 * 65.82629 * 17 16 15 42 42 H 1.09002 * 109.49986 * 60.76436 * 18 17 16 43 43 H 1.09003 * 109.50488 * 180.87866 * 18 17 16 44 44 H 1.09005 * 109.52603 * 177.55384 * 19 18 17 45 45 H 1.09001 * 109.52549 * 297.68412 * 19 18 17 46 46 H 1.09001 * 109.51611 * 302.31079 * 24 22 20 47 47 H 1.08997 * 109.52746 * 62.43046 * 24 22 20 48 48 H 1.08993 * 109.54808 * 176.84252 * 25 24 22 49 49 H 1.09006 * 109.53997 * 297.01904 * 25 24 22 50 50 H 1.08998 * 109.52353 * 62.92691 * 26 25 24 51 51 H 1.08998 * 109.52280 * 183.11953 * 26 25 24 52 52 H 1.08996 * 109.47867 * 177.59115 * 27 26 25 53 53 H 1.08996 * 109.48170 * 297.62610 * 27 26 25 54 54 H 1.09006 * 109.45927 * 294.17092 * 29 16 15 55 55 H 1.08997 * 109.46513 * 54.14040 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 1.4208 5 1 2.0974 1.0962 2.2417 6 6 3.1260 2.8780 1.6728 7 7 3.5533 3.6182 0.6731 8 14 3.4366 3.4177 3.4340 9 1 4.2393 2.3831 4.1343 10 1 4.1792 4.7037 3.4339 11 1 2.1389 3.5949 4.1336 12 6 2.1389 -1.1672 0.0057 13 8 3.3517 -1.1672 0.0062 14 6 1.3855 -2.4723 0.0115 15 6 2.3797 -3.6351 0.0167 16 7 1.6453 -4.9073 0.0230 17 6 0.8997 -5.0907 -1.2287 18 6 0.0351 -6.3496 -1.1294 19 6 0.9340 -7.5609 -0.8668 20 6 1.7352 -7.3235 0.4164 21 1 1.0514 -7.2285 1.2599 22 6 2.6796 -8.5034 0.6547 23 1 3.3643 -8.5969 -0.1883 24 6 1.8631 -9.7908 0.7943 25 6 2.8102 -10.9572 1.0923 26 6 3.6132 -10.6380 2.3571 27 6 4.3622 -9.3179 2.1570 28 8 3.4266 -8.2816 1.8525 29 6 2.5505 -6.0364 0.2722 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 3.1499 1.1384 -0.5138 34 1 1.6084 2.0284 -0.5138 35 1 4.0294 4.4444 0.8504 36 1 0.7585 -2.5259 0.9016 37 1 0.7591 -2.5342 -0.8784 38 1 3.0063 -3.5814 -0.8735 39 1 3.0064 -3.5734 0.9064 40 1 0.2612 -4.2243 -1.4015 41 1 1.6006 -5.1961 -2.0569 42 1 -0.6754 -6.2393 -0.3101 43 1 -0.5063 -6.4940 -2.0643 44 1 0.3187 -8.4533 -0.7521 45 1 1.6181 -7.6953 -1.7048 46 1 1.1498 -9.6828 1.6114 47 1 1.3263 -9.9843 -0.1344 48 1 2.2305 -11.8669 1.2484 49 1 3.4907 -11.0980 0.2525 50 1 2.9354 -10.5472 3.2057 51 1 4.3292 -11.4380 2.5455 52 1 4.9015 -9.0641 3.0695 53 1 5.0691 -9.4221 1.3339 54 1 3.2436 -6.1373 -0.5631 55 1 3.1111 -5.8569 1.1895 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595789726.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:45 Heat of formation + Delta-G solvation = -121.898341 kcal Electronic energy + Delta-G solvation = -30205.512365 eV Core-core repulsion = 26240.408771 eV Total energy + Delta-G solvation = -3965.103594 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.06597 -40.60372 -39.34765 -36.63965 -35.65416 -34.72825 -34.53983 -33.00717 -31.82060 -30.20324 -29.46614 -27.33046 -26.27555 -25.94286 -24.96978 -24.03767 -23.28801 -21.98523 -21.14305 -20.58405 -19.87567 -18.70499 -18.06921 -17.17438 -17.15396 -17.05422 -16.79292 -16.34780 -16.26201 -15.65497 -15.60535 -15.54498 -15.24175 -14.77730 -14.65173 -14.35744 -14.24801 -14.10083 -13.86239 -13.69841 -13.58440 -13.45676 -13.37053 -13.21460 -12.92706 -12.83580 -12.68264 -12.55477 -12.43276 -12.19601 -12.11705 -12.04610 -11.89629 -11.73925 -11.69670 -11.50537 -11.43635 -11.18616 -10.96408 -10.65018 -10.60623 -10.30487 -9.41866 -9.32652 -8.23042 -6.38067 1.35545 1.40342 1.47546 1.83751 2.27982 2.41455 2.80685 2.93657 3.06055 3.68811 3.80367 3.86449 3.89520 3.95166 4.00370 4.02532 4.06776 4.12484 4.19267 4.30363 4.37516 4.41080 4.44936 4.48967 4.56517 4.60419 4.69893 4.71503 4.72972 4.79329 4.84044 4.86635 4.92925 4.94941 4.96342 5.00543 5.04312 5.06486 5.06787 5.10430 5.16445 5.20667 5.22517 5.22687 5.34650 5.40476 5.52672 5.55719 5.84151 6.03875 6.05647 6.17821 6.36290 6.68836 6.79243 7.27427 7.48537 8.83760 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016445 B = 0.002094 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.223215 B =13369.921117 C =14587.883818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.611 5.611 3 C 0.258 3.742 4 C -0.543 4.543 5 H 0.052 0.948 6 C 0.005 3.995 7 N -0.928 5.928 8 Si 0.969 3.031 9 H -0.279 1.279 10 H -0.277 1.277 11 H -0.259 1.259 12 C 0.494 3.506 13 O -0.603 6.603 14 C -0.113 4.113 15 C 0.082 3.918 16 N -0.537 5.537 17 C 0.042 3.958 18 C -0.109 4.109 19 C -0.111 4.111 20 C -0.067 4.067 21 H 0.077 0.923 22 C 0.095 3.905 23 H 0.054 0.946 24 C -0.145 4.145 25 C -0.123 4.123 26 C -0.154 4.154 27 C 0.053 3.947 28 O -0.402 6.402 29 C 0.068 3.932 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.065 0.935 33 H -0.004 1.004 34 H 0.024 0.976 35 H 0.267 0.733 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.023 0.977 39 H 0.056 0.944 40 H 0.086 0.914 41 H 0.027 0.973 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.062 0.938 46 H 0.067 0.933 47 H 0.091 0.909 48 H 0.079 0.921 49 H 0.066 0.934 50 H 0.065 0.935 51 H 0.086 0.914 52 H 0.095 0.905 53 H 0.051 0.949 54 H 0.023 0.977 55 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.663 -31.829 -2.769 33.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.342 5.342 3 C 0.136 3.864 4 C -0.582 4.582 5 H 0.071 0.929 6 C -0.194 4.194 7 N -0.568 5.568 8 Si 0.793 3.207 9 H -0.205 1.205 10 H -0.202 1.202 11 H -0.183 1.183 12 C 0.283 3.717 13 O -0.485 6.485 14 C -0.152 4.152 15 C -0.047 4.047 16 N -0.261 5.261 17 C -0.085 4.085 18 C -0.147 4.147 19 C -0.148 4.148 20 C -0.086 4.086 21 H 0.095 0.905 22 C 0.037 3.963 23 H 0.072 0.928 24 C -0.183 4.183 25 C -0.161 4.161 26 C -0.191 4.191 27 C -0.023 4.023 28 O -0.322 6.322 29 C -0.060 4.060 30 H 0.090 0.910 31 H 0.113 0.887 32 H 0.083 0.917 33 H 0.014 0.986 34 H 0.042 0.958 35 H 0.076 0.924 36 H 0.133 0.867 37 H 0.135 0.865 38 H 0.041 0.959 39 H 0.075 0.925 40 H 0.104 0.896 41 H 0.045 0.955 42 H 0.091 0.909 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.081 0.919 46 H 0.085 0.915 47 H 0.109 0.891 48 H 0.097 0.903 49 H 0.085 0.915 50 H 0.084 0.916 51 H 0.104 0.896 52 H 0.113 0.887 53 H 0.070 0.930 54 H 0.041 0.959 55 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.347 -31.457 -2.336 32.899 hybrid contribution 1.545 0.779 0.055 1.731 sum -7.802 -30.678 -2.281 31.737 Atomic orbital electron populations 1.21950 0.77696 1.04062 1.02663 1.48209 1.08536 1.06343 1.71156 1.18751 0.91074 0.80521 0.96008 1.21678 1.36925 1.06545 0.93042 0.92939 1.25896 0.94903 0.96443 1.02127 1.70047 1.38896 1.14775 1.33093 0.85456 0.78903 0.77332 0.79053 1.20464 1.20196 1.18314 1.21392 0.87782 0.86777 0.75789 1.90632 1.16851 1.88303 1.52709 1.21543 0.98750 0.88681 1.06263 1.21564 0.94334 0.88425 1.00342 1.61915 1.27478 1.00964 1.35749 1.22346 0.96881 1.00229 0.89054 1.21561 0.97508 0.92492 1.03125 1.21652 0.98377 0.99195 0.95602 1.21114 0.96239 0.91556 0.99661 0.90481 1.22167 0.92601 0.94801 0.86727 0.92840 1.22208 0.98572 0.94089 1.03396 1.21617 0.98454 0.98379 0.97611 1.22171 1.00342 0.97770 0.98856 1.22706 0.90879 0.87603 1.01155 1.87939 1.54636 1.45868 1.43765 1.21988 0.93683 0.90603 0.99765 0.90964 0.88671 0.91651 0.98608 0.95753 0.92379 0.86720 0.86492 0.95916 0.92507 0.89576 0.95497 0.90869 0.89318 0.89382 0.91928 0.91469 0.89091 0.90281 0.91509 0.91637 0.89559 0.88712 0.93037 0.95881 0.92096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.36 10.25 127.77 1.31 3.67 16 2 N -0.61 -26.81 2.86 -851.12 -2.43 -29.24 16 3 C 0.26 14.41 5.16 85.63 0.44 14.85 16 4 C -0.54 -32.31 9.38 25.60 0.24 -32.07 16 5 H 0.05 3.09 7.81 -2.91 -0.02 3.06 16 6 C 0.01 0.31 5.46 84.65 0.46 0.77 16 7 N -0.93 -57.44 13.29 21.45 0.28 -57.16 16 8 Si 0.97 46.05 29.54 68.60 2.03 48.08 16 9 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 11 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 12 C 0.49 21.36 7.67 87.66 0.67 22.04 16 13 O -0.60 -32.76 15.56 -3.04 -0.05 -32.80 16 14 C -0.11 -3.30 4.18 29.85 0.12 -3.18 16 15 C 0.08 2.51 4.25 86.30 0.37 2.88 16 16 N -0.54 -12.96 4.65 -896.37 -4.17 -17.13 16 17 C 0.04 0.79 5.29 86.33 0.46 1.25 16 18 C -0.11 -1.45 6.09 30.65 0.19 -1.27 16 19 C -0.11 -1.41 4.86 30.67 0.15 -1.26 16 20 C -0.07 -1.18 2.15 -10.74 -0.02 -1.21 16 21 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 22 C 0.09 1.57 2.23 30.62 0.07 1.64 16 23 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 24 C -0.15 -1.71 4.99 30.68 0.15 -1.56 16 25 C -0.12 -1.25 6.03 30.71 0.19 -1.06 16 26 C -0.15 -1.77 6.14 30.68 0.19 -1.58 16 27 C 0.05 0.81 6.84 72.01 0.49 1.31 16 28 O -0.40 -8.49 9.76 -148.98 -1.45 -9.95 16 29 C 0.07 1.60 4.59 86.33 0.40 1.99 16 30 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.09 2.19 6.43 -2.39 -0.02 2.17 16 32 H 0.06 2.09 8.07 -2.39 -0.02 2.07 16 33 H 0.00 -0.27 7.43 -2.39 -0.02 -0.29 16 34 H 0.02 1.37 8.07 -2.38 -0.02 1.35 16 35 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 36 H 0.11 2.99 7.40 -2.38 -0.02 2.97 16 37 H 0.12 2.68 6.40 -2.39 -0.02 2.67 16 38 H 0.02 0.77 8.08 -2.39 -0.02 0.75 16 39 H 0.06 2.02 7.94 -2.39 -0.02 2.01 16 40 H 0.09 1.46 6.22 -2.38 -0.01 1.45 16 41 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.09 0.80 6.63 -2.38 -0.02 0.78 16 45 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.09 0.78 6.63 -2.39 -0.02 0.76 16 48 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 49 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 50 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 51 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 52 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 53 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 54 H 0.02 0.56 8.14 -2.38 -0.02 0.55 16 55 H 0.06 1.70 7.59 -2.39 -0.02 1.69 16 Total: -1.00 -77.62 417.69 0.90 -76.71 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 0.83 Total: 14.28 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: 5.87 Total: 7.21 kcal Atomic # 7 Polarization: -97.21 SS G_CDS: -6.32 Total: -103.53 kcal Atomic # 8 Polarization: -41.25 SS G_CDS: -1.50 Total: -42.75 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -77.62 0.90 -76.71 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595789726.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.185 kcal (2) G-P(sol) polarization free energy of solvation -77.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds