Wall clock time and date at job start Tue Mar 31 2020 22:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46501 * 120.00527 * 2 1 4 4 C 1.50700 * 109.47021 * 270.00265 * 3 2 1 5 5 H 1.08003 * 120.00061 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00327 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99495 * 359.97438 * 6 4 3 8 8 Si 1.86790 * 120.00296 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47081 * 59.99718 * 8 6 4 10 10 H 1.48499 * 109.47139 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47446 * 299.99471 * 8 6 4 12 12 C 1.34784 * 120.00112 * 179.97438 * 2 1 3 13 13 O 1.21271 * 120.00410 * 180.02562 * 12 2 1 14 14 C 1.50707 * 119.99323 * 0.02562 * 12 2 1 15 15 C 1.53006 * 109.46465 * 179.97438 * 14 12 2 16 16 N 1.46903 * 109.46632 * 180.02562 * 15 14 12 17 17 C 1.46842 * 111.00077 * 65.79321 * 16 15 14 18 18 C 1.53041 * 109.52407 * 185.84059 * 17 16 15 19 19 C 1.53124 * 109.27510 * 300.81747 * 18 17 16 20 20 C 1.53123 * 109.15980 * 57.65355 * 19 18 17 21 21 H 1.09006 * 109.50264 * 62.28502 * 20 19 18 22 22 C 1.53000 * 109.50348 * 182.40196 * 20 19 18 23 23 H 1.08996 * 109.47853 * 179.80547 * 22 20 19 24 24 C 1.53095 * 109.47933 * 299.82943 * 22 20 19 25 25 C 1.53185 * 109.15924 * 177.57855 * 24 22 20 26 26 C 1.53182 * 109.04395 * 303.03576 * 25 24 22 27 27 C 1.53093 * 109.16449 * 56.97569 * 26 25 24 28 28 O 1.42901 * 109.41409 * 302.39244 * 27 26 25 29 29 C 1.46846 * 110.99717 * 190.00023 * 16 15 14 30 30 H 1.08999 * 109.47289 * 270.00027 * 1 2 3 31 31 H 1.09000 * 109.46822 * 30.00310 * 1 2 3 32 32 H 1.08999 * 109.47393 * 150.00049 * 1 2 3 33 33 H 1.09006 * 109.46720 * 29.99740 * 3 2 1 34 34 H 1.08995 * 109.47589 * 149.99712 * 3 2 1 35 35 H 0.96995 * 119.99744 * 180.02562 * 7 6 4 36 36 H 1.09005 * 109.46974 * 60.00273 * 14 12 2 37 37 H 1.08994 * 109.47326 * 299.99586 * 14 12 2 38 38 H 1.08996 * 109.47126 * 60.00401 * 15 14 12 39 39 H 1.08994 * 109.47164 * 299.99873 * 15 14 12 40 40 H 1.09006 * 109.46447 * 305.84971 * 17 16 15 41 41 H 1.08991 * 109.46739 * 65.83356 * 17 16 15 42 42 H 1.08997 * 109.50282 * 60.75542 * 18 17 16 43 43 H 1.08997 * 109.50652 * 180.83934 * 18 17 16 44 44 H 1.09000 * 109.52368 * 297.74991 * 19 18 17 45 45 H 1.08997 * 109.52219 * 177.55867 * 19 18 17 46 46 H 1.08994 * 109.52429 * 297.49319 * 24 22 20 47 47 H 1.09001 * 109.52356 * 57.68661 * 24 22 20 48 48 H 1.08992 * 109.54338 * 183.16479 * 25 24 22 49 49 H 1.08999 * 109.60533 * 62.94405 * 25 24 22 50 50 H 1.08993 * 109.51955 * 297.06633 * 26 25 24 51 51 H 1.09002 * 109.51711 * 176.88133 * 26 25 24 52 52 H 1.08994 * 109.47956 * 182.40406 * 27 26 25 53 53 H 1.09004 * 109.48845 * 62.37769 * 27 26 25 54 54 H 1.08999 * 109.46089 * 54.14588 * 29 16 15 55 55 H 1.08994 * 109.45639 * 294.17306 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0957 -2.2417 6 6 3.1270 2.8773 -1.6729 7 7 3.5545 3.6174 -0.6732 8 14 3.4389 3.4161 -3.4340 9 1 2.1416 3.5941 -4.1343 10 1 4.1814 4.7022 -3.4340 11 1 4.2413 2.3809 -4.1337 12 6 2.1389 -1.1673 0.0005 13 8 3.3516 -1.1673 0.0010 14 6 1.3852 -2.4723 0.0005 15 6 2.3795 -3.6353 0.0005 16 7 1.6449 -4.9075 -0.0001 17 6 0.8954 -5.0817 -1.2507 18 6 0.0310 -6.3412 -1.1577 19 6 0.9308 -7.5545 -0.9068 20 6 1.7360 -7.3264 0.3755 21 1 1.0549 -7.2374 1.2219 22 6 2.6818 -8.5076 0.6017 23 1 3.2572 -8.3432 1.5127 24 6 1.8660 -9.7958 0.7386 25 6 2.8221 -10.9812 0.9041 26 6 3.7785 -11.0227 -0.2917 27 6 4.5203 -9.6870 -0.3886 28 8 3.5722 -8.6247 -0.5099 29 6 2.5509 -6.0383 0.2379 30 1 -0.3634 0.0000 1.0276 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3634 -0.8900 -0.5138 33 1 1.6085 2.0284 0.5138 34 1 3.1499 1.1384 0.5138 35 1 4.0313 4.4432 -0.8505 36 1 0.7589 -2.5302 -0.8898 37 1 0.7583 -2.5299 0.8902 38 1 3.0061 -3.5776 0.8905 39 1 3.0061 -3.5776 -0.8894 40 1 0.2564 -4.2141 -1.4152 41 1 1.5936 -5.1813 -2.0818 42 1 -0.6768 -6.2368 -0.3354 43 1 -0.5139 -6.4785 -2.0917 44 1 1.6128 -7.6822 -1.7473 45 1 0.3157 -8.4475 -0.7966 46 1 1.2180 -9.7255 1.6122 47 1 1.2593 -9.9395 -0.1555 48 1 2.2500 -11.9079 0.9458 49 1 3.3940 -10.8639 1.8245 50 1 3.2105 -11.1911 -1.2066 51 1 4.4980 -11.8299 -0.1547 52 1 5.1710 -9.6952 -1.2629 53 1 5.1200 -9.5381 0.5094 54 1 3.1144 -5.8655 1.1548 55 1 3.2413 -6.1331 -0.6001 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595789728.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:53 Heat of formation + Delta-G solvation = -120.792394 kcal Electronic energy + Delta-G solvation = -30294.274752 eV Core-core repulsion = 26329.219115 eV Total energy + Delta-G solvation = -3965.055637 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.09017 -40.61347 -39.27387 -36.63307 -35.54843 -34.72280 -34.51825 -33.03086 -31.82391 -30.17385 -29.44318 -27.32349 -26.31407 -25.99274 -24.88046 -24.15416 -23.34011 -22.01426 -21.05552 -20.41860 -19.86988 -18.70864 -18.06337 -17.17555 -17.08345 -16.97052 -16.78423 -16.31905 -16.14355 -15.79668 -15.74663 -15.43534 -15.14169 -14.90712 -14.69459 -14.41417 -14.23266 -14.08953 -13.83375 -13.62889 -13.54122 -13.44648 -13.32907 -13.22703 -12.98885 -12.78770 -12.67166 -12.44604 -12.40512 -12.20707 -12.16273 -12.08116 -12.01770 -11.75239 -11.69486 -11.49649 -11.32222 -11.12107 -10.89882 -10.65327 -10.60206 -10.28476 -9.41755 -9.33865 -8.23256 -6.38366 1.34957 1.39575 1.46877 1.84450 2.27599 2.41349 2.87128 2.95655 3.05796 3.67835 3.74631 3.87793 3.93454 3.96216 3.99735 4.03843 4.10528 4.14786 4.20817 4.33291 4.36966 4.42296 4.47185 4.53081 4.60307 4.65801 4.68688 4.70546 4.73894 4.82743 4.85796 4.88570 4.95295 4.96197 4.97926 5.01450 5.03335 5.06023 5.07736 5.14210 5.14804 5.19542 5.23075 5.28088 5.31133 5.46123 5.55453 5.57937 5.84265 6.03687 6.05494 6.13796 6.37787 6.68650 6.79507 7.27155 7.48807 8.83570 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.020759 B = 0.001982 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.474172 B =14123.750722 C =14540.365638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.611 5.611 3 C 0.258 3.742 4 C -0.543 4.543 5 H 0.052 0.948 6 C 0.005 3.995 7 N -0.928 5.928 8 Si 0.969 3.031 9 H -0.259 1.259 10 H -0.277 1.277 11 H -0.279 1.279 12 C 0.493 3.507 13 O -0.603 6.603 14 C -0.113 4.113 15 C 0.081 3.919 16 N -0.530 5.530 17 C 0.044 3.956 18 C -0.110 4.110 19 C -0.108 4.108 20 C -0.067 4.067 21 H 0.100 0.900 22 C 0.094 3.906 23 H 0.055 0.945 24 C -0.146 4.146 25 C -0.123 4.123 26 C -0.152 4.152 27 C 0.053 3.947 28 O -0.397 6.397 29 C 0.064 3.936 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.024 0.976 34 H -0.004 1.004 35 H 0.267 0.733 36 H 0.110 0.890 37 H 0.123 0.877 38 H 0.066 0.934 39 H 0.014 0.986 40 H 0.084 0.916 41 H 0.017 0.983 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.049 0.951 45 H 0.080 0.920 46 H 0.085 0.915 47 H 0.074 0.926 48 H 0.077 0.923 49 H 0.064 0.936 50 H 0.066 0.934 51 H 0.084 0.916 52 H 0.093 0.907 53 H 0.050 0.950 54 H 0.067 0.933 55 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.698 -31.617 2.616 33.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.343 5.343 3 C 0.136 3.864 4 C -0.582 4.582 5 H 0.071 0.929 6 C -0.194 4.194 7 N -0.568 5.568 8 Si 0.793 3.207 9 H -0.183 1.183 10 H -0.202 1.202 11 H -0.205 1.205 12 C 0.283 3.717 13 O -0.485 6.485 14 C -0.152 4.152 15 C -0.048 4.048 16 N -0.254 5.254 17 C -0.083 4.083 18 C -0.147 4.147 19 C -0.145 4.145 20 C -0.085 4.085 21 H 0.118 0.882 22 C 0.036 3.964 23 H 0.073 0.927 24 C -0.184 4.184 25 C -0.161 4.161 26 C -0.190 4.190 27 C -0.023 4.023 28 O -0.317 6.317 29 C -0.063 4.063 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.113 0.887 33 H 0.042 0.958 34 H 0.014 0.986 35 H 0.076 0.924 36 H 0.128 0.872 37 H 0.141 0.859 38 H 0.084 0.916 39 H 0.032 0.968 40 H 0.103 0.897 41 H 0.035 0.965 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.068 0.932 45 H 0.098 0.902 46 H 0.103 0.897 47 H 0.092 0.908 48 H 0.096 0.904 49 H 0.083 0.917 50 H 0.084 0.916 51 H 0.102 0.898 52 H 0.112 0.888 53 H 0.068 0.932 54 H 0.085 0.915 55 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -9.364 -31.286 2.892 32.785 hybrid contribution 1.551 0.779 -1.202 2.112 sum -7.813 -30.508 1.690 31.537 Atomic orbital electron populations 1.21940 0.77695 1.04004 1.02679 1.48207 1.08530 1.06345 1.71170 1.18752 0.91088 0.80534 0.96003 1.21674 1.36923 1.06562 0.93028 0.92928 1.25898 0.94917 0.96457 1.02118 1.70049 1.38839 1.14794 1.33095 0.85455 0.78897 0.77328 0.79053 1.18293 1.20227 1.20479 1.21400 0.87781 0.86782 0.75784 1.90629 1.16863 1.88294 1.52716 1.21550 0.98750 0.88652 1.06295 1.21590 0.94347 0.88453 1.00384 1.61983 1.27068 1.00996 1.35384 1.22293 0.96711 1.00146 0.89177 1.21576 0.97559 0.92663 1.02938 1.21569 0.97881 0.98382 0.96703 1.21211 0.96033 0.91251 1.00053 0.88193 1.22155 0.90545 0.94919 0.88805 0.92692 1.22213 0.98595 0.94071 1.03484 1.21613 0.97656 0.98749 0.98044 1.22156 0.99666 0.97814 0.99360 1.22683 0.90882 0.86586 1.02164 1.87937 1.47489 1.52681 1.43579 1.22028 0.93839 0.90397 1.00082 0.91018 0.91639 0.88684 0.95780 0.98597 0.92380 0.87227 0.85921 0.91560 0.96790 0.89732 0.96515 0.90217 0.90288 0.93201 0.90157 0.89674 0.90770 0.90425 0.91685 0.91570 0.89758 0.88839 0.93160 0.91485 0.96044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.37 10.24 127.77 1.31 3.67 16 2 N -0.61 -26.69 2.86 -851.13 -2.43 -29.12 16 3 C 0.26 14.36 5.16 85.63 0.44 14.80 16 4 C -0.54 -32.16 9.39 25.60 0.24 -31.91 16 5 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 6 C 0.01 0.30 5.46 84.65 0.46 0.76 16 7 N -0.93 -57.30 13.29 21.45 0.28 -57.02 16 8 Si 0.97 45.82 29.54 68.60 2.03 47.85 16 9 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 11 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 12 C 0.49 21.24 7.67 87.66 0.67 21.91 16 13 O -0.60 -32.62 15.56 -3.00 -0.05 -32.67 16 14 C -0.11 -3.27 4.18 29.85 0.12 -3.15 16 15 C 0.08 2.45 4.25 86.30 0.37 2.82 16 16 N -0.53 -12.61 4.66 -896.38 -4.17 -16.79 16 17 C 0.04 0.93 5.29 86.33 0.46 1.39 16 18 C -0.11 -1.70 6.09 30.65 0.19 -1.51 16 19 C -0.11 -1.70 4.75 30.68 0.15 -1.56 16 20 C -0.07 -1.12 2.24 -10.74 -0.02 -1.15 16 21 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 22 C 0.09 1.47 2.38 30.63 0.07 1.54 16 23 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 24 C -0.15 -1.64 5.13 30.69 0.16 -1.49 16 25 C -0.12 -1.21 6.03 30.72 0.19 -1.02 16 26 C -0.15 -1.64 6.14 30.69 0.19 -1.46 16 27 C 0.05 0.77 6.84 72.01 0.49 1.26 16 28 O -0.40 -7.75 9.00 -148.98 -1.34 -9.09 16 29 C 0.06 1.47 4.61 86.33 0.40 1.87 16 30 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.06 2.07 8.07 -2.39 -0.02 2.05 16 32 H 0.09 2.14 6.44 -2.39 -0.02 2.12 16 33 H 0.02 1.35 8.07 -2.38 -0.02 1.33 16 34 H 0.00 -0.26 7.42 -2.39 -0.02 -0.28 16 35 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 36 H 0.11 2.69 5.69 -2.38 -0.01 2.68 16 37 H 0.12 2.91 8.11 -2.39 -0.02 2.89 16 38 H 0.07 2.19 7.94 -2.39 -0.02 2.17 16 39 H 0.01 0.49 8.08 -2.39 -0.02 0.47 16 40 H 0.08 1.62 6.21 -2.38 -0.01 1.61 16 41 H 0.02 0.41 8.14 -2.39 -0.02 0.39 16 42 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.05 0.99 7.62 -2.39 -0.02 0.97 16 45 H 0.08 1.00 6.53 -2.39 -0.02 0.98 16 46 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.07 0.87 6.38 -2.39 -0.02 0.85 16 48 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 49 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 50 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 51 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 52 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 53 H 0.05 0.68 8.14 -2.38 -0.02 0.67 16 54 H 0.07 1.56 8.02 -2.39 -0.02 1.54 16 55 H 0.02 0.58 7.66 -2.39 -0.02 0.56 16 Total: -1.00 -76.68 416.27 1.02 -75.66 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: 0.83 Total: 14.40 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: 5.88 Total: 6.79 kcal Atomic # 7 Polarization: -96.61 SS G_CDS: -6.32 Total: -102.93 kcal Atomic # 8 Polarization: -40.37 SS G_CDS: -1.39 Total: -41.76 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -76.68 1.02 -75.66 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595789728.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.133 kcal (2) G-P(sol) polarization free energy of solvation -76.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds