Wall clock time and date at job start Tue Mar 31 2020 22:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00136 * 2 1 4 4 C 1.50703 * 109.47219 * 269.99493 * 3 2 1 5 5 H 1.07996 * 119.99587 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00012 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00204 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99711 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47162 * 90.00216 * 8 6 4 10 10 H 1.48504 * 109.46778 * 209.99667 * 8 6 4 11 11 H 1.48495 * 109.47398 * 329.99635 * 8 6 4 12 12 C 1.34784 * 119.99893 * 179.97438 * 2 1 3 13 13 O 1.21274 * 119.99897 * 179.73022 * 12 2 1 14 14 C 1.50695 * 119.99635 * 0.02562 * 12 2 1 15 15 C 1.53002 * 109.47004 * 179.97438 * 14 12 2 16 16 N 1.46893 * 109.47257 * 180.02562 * 15 14 12 17 17 C 1.46845 * 111.00288 * 66.04766 * 16 15 14 18 18 C 1.53035 * 109.52676 * 174.15853 * 17 16 15 19 19 C 1.53121 * 109.27906 * 59.18084 * 18 17 16 20 20 C 1.53115 * 109.15927 * 302.34830 * 19 18 17 21 21 H 1.09005 * 109.50432 * 297.71200 * 20 19 18 22 22 C 1.53001 * 109.50491 * 177.59455 * 20 19 18 23 23 H 1.08996 * 109.48225 * 300.01880 * 22 20 19 24 24 C 1.53091 * 109.47788 * 60.05503 * 22 20 19 25 25 C 1.53182 * 109.15805 * 177.59281 * 24 22 20 26 26 C 1.53170 * 109.03892 * 303.01669 * 25 24 22 27 27 C 1.53093 * 109.16537 * 56.98020 * 26 25 24 28 28 O 1.42905 * 109.41665 * 302.39600 * 27 26 25 29 29 C 1.46850 * 111.00233 * 301.83642 * 16 15 14 30 30 H 1.08996 * 109.47008 * 270.00543 * 1 2 3 31 31 H 1.08997 * 109.46865 * 30.00228 * 1 2 3 32 32 H 1.08998 * 109.47058 * 149.99741 * 1 2 3 33 33 H 1.08998 * 109.47416 * 29.99674 * 3 2 1 34 34 H 1.09008 * 109.47058 * 150.00274 * 3 2 1 35 35 H 0.97000 * 120.00290 * 180.02562 * 7 6 4 36 36 H 1.09005 * 109.47403 * 300.00056 * 14 12 2 37 37 H 1.09002 * 109.47422 * 60.00295 * 14 12 2 38 38 H 1.08997 * 109.47244 * 300.00535 * 15 14 12 39 39 H 1.09002 * 109.46787 * 59.99910 * 15 14 12 40 40 H 1.08997 * 109.46246 * 294.18192 * 17 16 15 41 41 H 1.08999 * 109.46249 * 54.14223 * 17 16 15 42 42 H 1.09001 * 109.50232 * 179.11860 * 18 17 16 43 43 H 1.09000 * 109.50383 * 299.23932 * 18 17 16 44 44 H 1.09004 * 109.51873 * 62.24541 * 19 18 17 45 45 H 1.08996 * 109.52656 * 182.44093 * 19 18 17 46 46 H 1.08993 * 109.52108 * 297.49495 * 24 22 20 47 47 H 1.08999 * 109.52508 * 57.68788 * 24 22 20 48 48 H 1.09004 * 109.54184 * 183.14887 * 25 24 22 49 49 H 1.09002 * 109.54537 * 62.88606 * 25 24 22 50 50 H 1.09002 * 109.52260 * 297.07848 * 26 25 24 51 51 H 1.08998 * 109.52678 * 176.88760 * 26 25 24 52 52 H 1.08995 * 109.48330 * 182.40972 * 27 26 25 53 53 H 1.09008 * 109.47517 * 62.37477 * 27 26 25 54 54 H 1.08998 * 109.45854 * 305.85519 * 29 16 15 55 55 H 1.09000 * 109.45720 * 65.82128 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0983 1.0956 -2.2416 6 6 3.1271 2.8773 -1.6727 7 7 3.5552 3.6170 -0.6732 8 14 3.4379 3.4168 -3.4340 9 1 2.3082 4.2605 -3.8999 10 1 4.6986 4.1991 -3.4968 11 1 3.5542 2.2199 -4.3051 12 6 2.1389 -1.1673 0.0005 13 8 3.3516 -1.1673 -0.0044 14 6 1.3853 -2.4723 0.0005 15 6 2.3795 -3.6353 0.0005 16 7 1.6450 -4.9074 -0.0001 17 6 0.9002 -5.0845 -1.2532 18 6 0.2679 -6.4778 -1.2799 19 6 -0.6716 -6.6297 -0.0803 20 6 0.1183 -6.3928 1.2098 21 1 0.8993 -7.1476 1.3022 22 6 -0.8254 -6.4834 2.4106 23 1 -1.6051 -5.7274 2.3181 24 6 -1.4647 -7.8738 2.4537 25 6 -2.3611 -7.9769 3.6915 26 6 -1.5243 -7.6829 4.9403 27 6 -0.8826 -6.2999 4.8012 28 8 -0.0876 -6.2623 3.6143 29 6 0.7551 -5.0019 1.1643 30 1 -0.3633 0.0001 1.0276 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3633 -0.8899 -0.5139 33 1 1.6085 2.0284 0.5138 34 1 3.1500 1.1383 0.5138 35 1 4.0321 4.4429 -0.8504 36 1 0.7582 -2.5298 0.8903 37 1 0.7590 -2.5302 -0.8897 38 1 3.0062 -3.5775 -0.8894 39 1 3.0061 -3.5775 0.8905 40 1 0.1175 -4.3290 -1.3204 41 1 1.5806 -4.9783 -2.0982 42 1 -0.2977 -6.6032 -2.2032 43 1 1.0511 -7.2340 -1.2267 44 1 -1.4770 -5.8988 -0.1536 45 1 -1.0910 -7.6357 -0.0711 46 1 -2.0639 -8.0271 1.5562 47 1 -0.6837 -8.6324 2.5053 48 1 -2.7756 -8.9828 3.7588 49 1 -3.1713 -7.2515 3.6164 50 1 -0.7445 -8.4376 5.0422 51 1 -2.1661 -7.6997 5.8211 52 1 -0.2516 -6.1032 5.6678 53 1 -1.6633 -5.5415 4.7400 54 1 1.3302 -4.8357 2.0752 55 1 -0.0270 -4.2468 1.0858 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595789729.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:57 Heat of formation + Delta-G solvation = -121.121291 kcal Electronic energy + Delta-G solvation = -30694.290450 eV Core-core repulsion = 26729.220551 eV Total energy + Delta-G solvation = -3965.069899 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.19239 -40.58044 -39.37984 -36.66893 -35.68313 -34.74219 -34.50721 -33.09925 -31.37040 -30.24868 -29.45036 -27.38001 -26.43281 -25.89929 -24.92756 -24.33194 -23.10343 -22.09867 -21.13744 -20.65048 -19.71613 -18.72621 -18.05552 -17.15930 -17.12936 -17.08052 -16.79166 -16.31600 -16.21867 -15.89010 -15.57425 -15.42474 -15.04655 -14.89279 -14.61808 -14.44079 -14.20258 -13.95771 -13.81440 -13.71465 -13.54388 -13.49503 -13.46256 -13.22945 -12.98831 -12.91385 -12.79185 -12.53301 -12.51355 -12.22976 -12.07909 -12.01044 -11.79402 -11.74221 -11.65057 -11.49859 -11.44625 -11.16952 -10.95844 -10.66345 -10.64193 -10.27346 -9.45340 -9.25032 -8.24396 -6.39682 1.34691 1.38221 1.48512 1.79895 2.29083 2.43044 2.83364 2.92949 3.04863 3.70734 3.79735 3.83694 3.93470 3.97985 3.98930 4.01600 4.04938 4.10300 4.16314 4.30150 4.33058 4.41245 4.43315 4.48020 4.50479 4.64369 4.65740 4.71399 4.74942 4.79568 4.86633 4.88913 4.89450 4.91986 4.97464 4.99593 5.04664 5.08139 5.12650 5.13640 5.19193 5.20140 5.22759 5.24211 5.37426 5.42271 5.53360 5.53905 5.81323 6.03579 6.07928 6.21230 6.39833 6.66823 6.75680 7.25784 7.45397 8.82823 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019016 B = 0.002232 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.055969 B =12541.543077 C =13309.962002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.613 5.613 3 C 0.258 3.742 4 C -0.542 4.542 5 H 0.053 0.947 6 C 0.005 3.995 7 N -0.929 5.929 8 Si 0.970 3.030 9 H -0.262 1.262 10 H -0.280 1.280 11 H -0.273 1.273 12 C 0.497 3.503 13 O -0.597 6.597 14 C -0.154 4.154 15 C 0.082 3.918 16 N -0.537 5.537 17 C 0.043 3.957 18 C -0.110 4.110 19 C -0.109 4.109 20 C -0.069 4.069 21 H 0.071 0.929 22 C 0.096 3.904 23 H 0.059 0.941 24 C -0.146 4.146 25 C -0.123 4.123 26 C -0.155 4.155 27 C 0.054 3.946 28 O -0.401 6.401 29 C 0.062 3.938 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.023 0.977 34 H -0.004 1.004 35 H 0.268 0.732 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.042 0.958 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.085 0.915 46 H 0.090 0.910 47 H 0.064 0.936 48 H 0.076 0.924 49 H 0.068 0.932 50 H 0.063 0.937 51 H 0.085 0.915 52 H 0.094 0.906 53 H 0.054 0.946 54 H 0.062 0.938 55 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.413 -26.403 5.902 32.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.344 5.344 3 C 0.136 3.864 4 C -0.581 4.581 5 H 0.071 0.929 6 C -0.194 4.194 7 N -0.568 5.568 8 Si 0.794 3.206 9 H -0.186 1.186 10 H -0.206 1.206 11 H -0.198 1.198 12 C 0.285 3.715 13 O -0.479 6.479 14 C -0.195 4.195 15 C -0.047 4.047 16 N -0.260 5.260 17 C -0.085 4.085 18 C -0.148 4.148 19 C -0.147 4.147 20 C -0.088 4.088 21 H 0.089 0.911 22 C 0.038 3.962 23 H 0.077 0.923 24 C -0.184 4.184 25 C -0.161 4.161 26 C -0.192 4.192 27 C -0.023 4.023 28 O -0.321 6.321 29 C -0.066 4.066 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.041 0.959 34 H 0.014 0.986 35 H 0.076 0.924 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.060 0.940 41 H 0.088 0.912 42 H 0.105 0.895 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.103 0.897 46 H 0.108 0.892 47 H 0.082 0.918 48 H 0.095 0.905 49 H 0.087 0.913 50 H 0.082 0.918 51 H 0.104 0.896 52 H 0.112 0.888 53 H 0.072 0.928 54 H 0.081 0.919 55 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -17.183 -26.585 5.981 32.215 hybrid contribution -0.006 1.584 -0.490 1.658 sum -17.189 -25.001 5.490 30.833 Atomic orbital electron populations 1.21900 0.77962 1.03897 1.02440 1.48239 1.08401 1.06510 1.71262 1.18760 0.91040 0.80430 0.96128 1.21676 1.36923 1.06568 0.92912 0.92916 1.25907 0.94852 0.96438 1.02183 1.70055 1.38874 1.14808 1.33111 0.85378 0.78140 0.78211 0.78854 1.18644 1.20580 1.19765 1.21279 0.87812 0.86512 0.75853 1.90635 1.16621 1.88179 1.52425 1.22273 1.00464 0.91420 1.05344 1.21750 0.94947 0.85325 1.02672 1.62214 1.28985 1.31390 1.03431 1.22273 0.96651 0.98115 0.91413 1.21552 0.98780 0.95603 0.98847 1.21639 0.97588 1.03060 0.92400 1.21120 0.97287 0.96740 0.93647 0.91087 1.22159 0.93210 0.96612 0.84194 0.92259 1.22216 0.99757 0.96770 0.99643 1.21618 0.97800 1.02766 0.93867 1.22175 1.00127 0.97587 0.99330 1.22699 0.95406 0.96667 0.87500 1.87940 1.36630 1.92710 1.14837 1.22079 0.94741 0.96928 0.92837 0.91302 0.91430 0.89082 0.95902 0.98572 0.92355 0.87332 0.87367 0.91582 0.91826 0.93983 0.91242 0.89525 0.91656 0.91212 0.89669 0.89162 0.91761 0.90498 0.91345 0.91807 0.89636 0.88758 0.92809 0.91906 0.94127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.44 10.24 127.77 1.31 3.75 16 2 N -0.61 -26.88 2.86 -851.14 -2.43 -29.31 16 3 C 0.26 14.38 5.16 85.63 0.44 14.82 16 4 C -0.54 -31.98 9.39 25.60 0.24 -31.74 16 5 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 6 C 0.01 0.30 5.46 84.65 0.46 0.76 16 7 N -0.93 -57.23 13.29 21.45 0.28 -56.94 16 8 Si 0.97 45.58 29.54 68.60 2.03 47.60 16 9 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 11 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 12 C 0.50 21.40 7.67 87.65 0.67 22.07 16 13 O -0.60 -32.11 15.56 -3.01 -0.05 -32.16 16 14 C -0.15 -4.48 3.55 29.85 0.11 -4.37 16 15 C 0.08 2.45 4.65 86.31 0.40 2.85 16 16 N -0.54 -12.78 4.86 -896.39 -4.35 -17.14 16 17 C 0.04 0.83 5.05 86.33 0.44 1.26 16 18 C -0.11 -1.56 6.09 30.65 0.19 -1.37 16 19 C -0.11 -1.34 4.86 30.67 0.15 -1.19 16 20 C -0.07 -1.15 2.15 -10.74 -0.02 -1.18 16 21 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 22 C 0.10 1.46 2.23 30.62 0.07 1.53 16 23 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 24 C -0.15 -1.65 4.99 30.69 0.15 -1.50 16 25 C -0.12 -1.19 6.03 30.71 0.19 -1.01 16 26 C -0.15 -1.70 6.14 30.68 0.19 -1.51 16 27 C 0.05 0.77 6.84 72.01 0.49 1.26 16 28 O -0.40 -7.92 9.76 -148.98 -1.45 -9.37 16 29 C 0.06 1.31 3.96 86.33 0.34 1.65 16 30 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.07 2.15 8.07 -2.39 -0.02 2.13 16 32 H 0.09 2.11 6.44 -2.39 -0.02 2.09 16 33 H 0.02 1.29 8.07 -2.39 -0.02 1.27 16 34 H 0.00 -0.25 7.43 -2.38 -0.02 -0.27 16 35 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 36 H 0.11 2.70 6.47 -2.38 -0.02 2.68 16 37 H 0.11 2.69 5.94 -2.39 -0.01 2.68 16 38 H 0.07 2.20 8.02 -2.39 -0.02 2.18 16 39 H 0.06 2.15 8.10 -2.39 -0.02 2.13 16 40 H 0.04 0.76 6.75 -2.39 -0.02 0.74 16 41 H 0.07 1.43 8.06 -2.39 -0.02 1.41 16 42 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.06 1.02 8.14 -2.39 -0.02 1.01 16 44 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.08 0.77 6.63 -2.39 -0.02 0.75 16 46 H 0.09 0.74 6.63 -2.39 -0.02 0.73 16 47 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 49 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 50 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 51 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 52 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 53 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 54 H 0.06 1.60 7.70 -2.39 -0.02 1.58 16 55 H 0.04 0.80 6.61 -2.39 -0.02 0.79 16 Total: -1.00 -76.23 414.53 0.67 -75.56 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 0.83 Total: 15.66 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: 5.81 Total: 6.10 kcal Atomic # 7 Polarization: -96.89 SS G_CDS: -6.50 Total: -103.39 kcal Atomic # 8 Polarization: -40.03 SS G_CDS: -1.50 Total: -41.53 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Total: -76.23 0.67 -75.56 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595789729.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.558 kcal (2) G-P(sol) polarization free energy of solvation -76.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds