Wall clock time and date at job start Tue Mar 31 2020 23:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42898 * 113.99952 * 2 1 4 4 H 1.08997 * 109.47177 * 358.59678 * 3 2 1 5 5 C 1.50705 * 109.47108 * 118.59597 * 3 2 1 6 6 O 1.21274 * 120.00302 * 6.22742 * 5 3 2 7 7 N 1.34778 * 119.99625 * 186.22325 * 5 3 2 8 8 C 1.46500 * 119.99629 * 175.62561 * 7 5 3 9 9 C 1.53000 * 109.47145 * 180.27622 * 8 7 5 10 10 C 1.53041 * 109.45959 * 295.02567 * 9 8 7 11 11 C 1.53188 * 109.31362 * 178.60237 * 10 9 8 12 12 N 1.46924 * 108.76648 * 54.65400 * 11 10 9 13 13 C 1.36942 * 120.63052 * 126.36443 * 12 11 10 14 14 H 1.07999 * 119.99828 * 329.06401 * 13 12 11 15 15 C 1.38813 * 119.99873 * 149.07173 * 13 12 11 16 16 N 1.31614 * 120.00161 * 348.02055 * 15 13 12 17 17 Si 1.86798 * 119.99849 * 168.02826 * 15 13 12 18 18 H 1.48499 * 109.47493 * 89.99679 * 17 15 13 19 19 H 1.48496 * 109.47140 * 209.99673 * 17 15 13 20 20 H 1.48500 * 109.47392 * 329.99723 * 17 15 13 21 21 C 1.46920 * 118.73727 * 306.38343 * 12 11 10 22 22 C 1.53038 * 109.46424 * 174.96909 * 9 8 7 23 23 C 1.53004 * 109.47187 * 238.59599 * 3 2 1 24 24 C 1.53000 * 109.46678 * 64.95548 * 23 3 2 25 25 C 1.53008 * 109.46638 * 180.02562 * 24 23 3 26 26 C 1.52992 * 109.47431 * 59.99668 * 25 24 23 27 27 C 1.52994 * 109.47413 * 300.00133 * 26 25 24 28 28 C 1.52999 * 109.47271 * 59.99996 * 27 26 25 29 29 H 1.09005 * 109.47129 * 58.73473 * 1 2 3 30 30 H 1.09004 * 109.47085 * 178.72820 * 1 2 3 31 31 H 1.08994 * 109.47956 * 298.73629 * 1 2 3 32 32 H 0.96996 * 120.00390 * 355.89019 * 7 5 3 33 33 H 1.09007 * 109.47220 * 300.27136 * 8 7 5 34 34 H 1.08994 * 109.47521 * 60.27296 * 8 7 5 35 35 H 1.08998 * 109.46375 * 54.99558 * 9 8 7 36 36 H 1.09003 * 109.49463 * 298.56491 * 10 9 8 37 37 H 1.09000 * 109.50327 * 58.65585 * 10 9 8 38 38 H 1.08999 * 109.59975 * 294.86144 * 11 10 9 39 39 H 1.09005 * 109.69915 * 174.50422 * 11 10 9 40 40 H 0.96998 * 119.99783 * 180.02562 * 16 15 13 41 41 H 1.09001 * 109.58979 * 293.81920 * 21 12 11 42 42 H 1.09000 * 109.70212 * 173.46742 * 21 12 11 43 43 H 1.09000 * 109.49660 * 301.33615 * 22 9 8 44 44 H 1.09004 * 109.49600 * 61.39857 * 22 9 8 45 45 H 1.08998 * 109.47352 * 184.95670 * 23 3 2 46 46 H 1.09007 * 109.47186 * 299.99546 * 24 23 3 47 47 H 1.08991 * 109.47509 * 60.00245 * 24 23 3 48 48 H 1.09007 * 109.46527 * 299.99417 * 25 24 23 49 49 H 1.09002 * 109.46759 * 180.02562 * 25 24 23 50 50 H 1.08997 * 109.47067 * 179.97438 * 26 25 24 51 51 H 1.09004 * 109.47248 * 59.99859 * 26 25 24 52 52 H 1.08998 * 109.47103 * 299.99915 * 27 26 25 53 53 H 1.09004 * 109.47178 * 179.97438 * 27 26 25 54 54 H 1.09003 * 109.47336 * 180.02562 * 28 27 26 55 55 H 1.08998 * 109.47123 * 59.99931 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 1 1.2194 2.0552 -0.0252 5 6 2.8357 1.4878 1.2475 6 8 3.0111 0.5535 2.0006 7 7 3.3792 2.6892 1.5263 8 6 4.1006 2.8924 2.7850 9 6 4.6074 4.3344 2.8553 10 6 5.6431 4.5651 1.7525 11 6 6.1225 6.0191 1.8038 12 7 6.6101 6.3085 3.1592 13 6 7.8647 6.8214 3.3547 14 1 8.6625 6.5721 2.6709 15 6 8.1109 7.6616 4.4319 16 7 7.1065 8.1547 5.1250 17 14 9.8678 8.0927 4.8976 18 1 10.2879 9.3152 4.1669 19 1 9.9460 8.3387 6.3600 20 1 10.7661 6.9668 4.5363 21 6 5.7261 6.0368 4.3009 22 6 5.2509 4.5827 4.2214 23 6 2.9043 1.4657 -1.2312 24 6 2.0459 1.4036 -2.4963 25 6 2.9402 1.5632 -3.7275 26 6 3.9739 0.4357 -3.7567 27 6 4.8321 0.4977 -2.4917 28 6 3.9380 0.3380 -1.2605 29 1 -0.3634 0.5334 -0.8785 30 1 -0.3633 -1.0274 -0.0228 31 1 -0.3635 0.4940 0.9010 32 1 3.2894 3.4203 0.8953 33 1 3.4301 2.7018 3.6230 34 1 4.9468 2.2072 2.8337 35 1 3.7716 5.0202 2.7176 36 1 6.4908 3.8968 1.9040 37 1 5.1909 4.3653 0.7810 38 1 5.2944 6.6858 1.5631 39 1 6.9298 6.1654 1.0860 40 1 7.2786 8.7421 5.8774 41 1 4.8657 6.7049 4.2640 42 1 6.2703 6.1930 5.2323 43 1 4.5195 4.3955 5.0076 44 1 6.1020 3.9138 4.3497 45 1 3.4160 2.4270 -1.1861 46 1 1.5343 0.4422 -2.5414 47 1 1.3093 2.2066 -2.4753 48 1 3.4521 2.5246 -3.6825 49 1 2.3286 1.5195 -4.6288 50 1 4.6106 0.5492 -4.6341 51 1 3.4619 -0.5255 -3.8016 52 1 5.3441 1.4589 -2.4467 53 1 5.5683 -0.3059 -2.5123 54 1 4.5494 0.3827 -0.3591 55 1 3.4260 -0.6232 -1.3054 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597294360.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:27 Heat of formation + Delta-G solvation = -114.560222 kcal Electronic energy + Delta-G solvation = -31030.982299 eV Core-core repulsion = 27066.196910 eV Total energy + Delta-G solvation = -3964.785390 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.43362 -39.76521 -39.02398 -37.94480 -36.35697 -34.54630 -33.09884 -32.30745 -31.61256 -31.38071 -28.99810 -28.02210 -26.74751 -25.45063 -23.85708 -23.53115 -22.95111 -22.49349 -21.32991 -20.64512 -20.55604 -18.75704 -18.28020 -17.74443 -17.15987 -16.85879 -16.45965 -16.01458 -15.81270 -15.66447 -15.39742 -15.28573 -15.09451 -14.92452 -14.85713 -14.65791 -14.45203 -14.02423 -13.99752 -13.82423 -13.43391 -13.16105 -13.02083 -12.96750 -12.81525 -12.73867 -12.57429 -12.34857 -12.27576 -12.01087 -11.99081 -11.88064 -11.84669 -11.61534 -11.44969 -11.32789 -11.21229 -11.15545 -11.09820 -10.84968 -10.54895 -10.23761 -10.06555 -8.61022 -7.86302 -5.35613 1.45812 1.47371 1.56522 1.58324 2.00325 2.50969 2.95096 3.29142 3.60255 3.63897 3.72808 3.82145 3.84591 3.92107 3.97764 4.07895 4.09321 4.33760 4.39662 4.43039 4.52165 4.54509 4.55051 4.57887 4.62008 4.68043 4.69217 4.70036 4.74076 4.77709 4.82215 4.86536 4.94702 5.03393 5.04010 5.14537 5.19392 5.27235 5.29539 5.30473 5.32315 5.34132 5.39007 5.41134 5.45056 5.46808 5.57042 5.63645 5.66584 5.80972 6.08249 6.42698 6.58308 7.17640 7.24814 7.88965 8.40260 9.19375 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016648 B = 0.002436 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.458120 B =11491.280958 C =12509.758005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.378 6.378 3 C 0.081 3.919 4 H 0.118 0.882 5 C 0.497 3.503 6 O -0.576 6.576 7 N -0.712 5.712 8 C 0.137 3.863 9 C -0.076 4.076 10 C -0.113 4.113 11 C 0.141 3.859 12 N -0.613 5.613 13 C -0.262 4.262 14 H 0.063 0.937 15 C -0.050 4.050 16 N -0.935 5.935 17 Si 0.966 3.034 18 H -0.283 1.283 19 H -0.293 1.293 20 H -0.272 1.272 21 C 0.179 3.821 22 C -0.123 4.123 23 C -0.085 4.085 24 C -0.107 4.107 25 C -0.117 4.117 26 C -0.118 4.118 27 C -0.118 4.118 28 C -0.106 4.106 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.040 0.960 32 H 0.414 0.586 33 H 0.060 0.940 34 H 0.050 0.950 35 H 0.080 0.920 36 H 0.046 0.954 37 H 0.086 0.914 38 H 0.020 0.980 39 H 0.051 0.949 40 H 0.250 0.750 41 H 0.000 1.000 42 H 0.050 0.950 43 H 0.067 0.933 44 H 0.047 0.953 45 H 0.096 0.904 46 H 0.064 0.936 47 H 0.081 0.919 48 H 0.067 0.933 49 H 0.073 0.927 50 H 0.067 0.933 51 H 0.058 0.942 52 H 0.063 0.937 53 H 0.056 0.944 54 H 0.033 0.967 55 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.942 -13.949 -18.313 27.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.296 6.296 3 C 0.019 3.981 4 H 0.135 0.865 5 C 0.284 3.716 6 O -0.455 6.455 7 N -0.366 5.366 8 C 0.013 3.987 9 C -0.095 4.095 10 C -0.152 4.152 11 C 0.015 3.985 12 N -0.337 5.337 13 C -0.393 4.393 14 H 0.080 0.920 15 C -0.245 4.245 16 N -0.582 5.582 17 Si 0.794 3.206 18 H -0.210 1.210 19 H -0.219 1.219 20 H -0.197 1.197 21 C 0.054 3.946 22 C -0.163 4.163 23 C -0.104 4.104 24 C -0.145 4.145 25 C -0.154 4.154 26 C -0.155 4.155 27 C -0.156 4.156 28 C -0.143 4.143 29 H 0.086 0.914 30 H 0.113 0.887 31 H 0.058 0.942 32 H 0.251 0.749 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.065 0.935 37 H 0.104 0.896 38 H 0.038 0.962 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.018 0.982 42 H 0.068 0.932 43 H 0.086 0.914 44 H 0.065 0.935 45 H 0.114 0.886 46 H 0.082 0.918 47 H 0.099 0.901 48 H 0.085 0.915 49 H 0.092 0.908 50 H 0.085 0.915 51 H 0.076 0.924 52 H 0.082 0.918 53 H 0.074 0.926 54 H 0.051 0.949 55 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.710 -14.687 -17.649 27.269 hybrid contribution 0.939 0.917 0.813 1.544 sum -13.771 -13.770 -16.837 25.743 Atomic orbital electron populations 1.23114 0.79379 1.04085 1.00938 1.88002 1.21296 1.25791 1.94466 1.22200 0.96578 0.87771 0.91532 0.86465 1.21569 0.80023 0.82156 0.87856 1.90686 1.61222 1.41593 1.51984 1.45943 1.55519 1.13212 1.21916 1.21243 0.95393 0.96178 0.85857 1.21138 0.98070 0.94539 0.95783 1.21920 0.97965 0.97048 0.98284 1.21072 0.96751 0.94209 0.86419 1.44293 1.14032 1.73976 1.01360 1.19480 0.87358 1.21218 1.11216 0.91965 1.25863 1.00741 0.97257 1.00660 1.70134 1.30953 1.35023 1.22042 0.85305 0.80425 0.78151 0.76747 1.20970 1.21926 1.19712 1.20539 0.91664 0.90987 0.91450 1.21994 0.99431 0.98269 0.96611 1.21497 0.95734 1.00037 0.93113 1.21541 0.97604 1.02786 0.92545 1.21524 0.97301 0.98764 0.97853 1.21525 0.97723 0.99229 0.97072 1.21531 0.97698 1.01832 0.94538 1.21384 0.96729 0.98942 0.97282 0.91382 0.88667 0.94151 0.74878 0.92143 0.93119 0.90158 0.93483 0.89586 0.96189 0.93081 0.94132 0.98232 0.93160 0.91406 0.93460 0.88596 0.91762 0.90080 0.91452 0.90795 0.91458 0.92367 0.91779 0.92558 0.94858 0.92370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.70 113.37 1.21 1.49 16 2 O -0.38 -7.92 8.54 -130.02 -1.11 -9.03 16 3 C 0.08 1.42 2.34 29.85 0.07 1.49 16 4 H 0.12 1.33 7.60 -2.39 -0.02 1.31 16 5 C 0.50 12.51 6.14 87.66 0.54 13.05 16 6 O -0.58 -20.46 16.52 15.95 0.26 -20.20 16 7 N -0.71 -15.36 5.21 -463.06 -2.41 -17.77 16 8 C 0.14 3.67 5.07 86.38 0.44 4.10 16 9 C -0.08 -2.22 2.19 -10.77 -0.02 -2.24 16 10 C -0.11 -3.40 5.25 30.67 0.16 -3.24 16 11 C 0.14 5.48 6.52 86.36 0.56 6.04 16 12 N -0.61 -30.31 2.99 -699.13 -2.09 -32.40 16 13 C -0.26 -14.43 9.58 84.03 0.81 -13.62 16 14 H 0.06 3.35 7.86 -2.91 -0.02 3.33 16 15 C -0.05 -2.79 5.02 84.86 0.43 -2.37 16 16 N -0.94 -55.26 11.10 21.65 0.24 -55.02 16 17 Si 0.97 45.02 29.57 68.60 2.03 47.05 16 18 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 19 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 20 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 21 C 0.18 8.52 5.26 86.36 0.45 8.97 16 22 C -0.12 -4.50 5.36 30.67 0.16 -4.33 16 23 C -0.08 -1.25 2.01 -10.79 -0.02 -1.27 16 24 C -0.11 -1.14 5.10 30.60 0.16 -0.99 16 25 C -0.12 -1.20 5.92 30.59 0.18 -1.02 16 26 C -0.12 -1.49 5.92 30.59 0.18 -1.31 16 27 C -0.12 -1.91 5.92 30.59 0.18 -1.73 16 28 C -0.11 -2.07 4.82 30.60 0.15 -1.92 16 29 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.41 6.43 7.32 -92.71 -0.68 5.76 16 33 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 34 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.09 1.92 7.15 -2.39 -0.02 1.91 16 38 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.05 1.97 7.93 -2.38 -0.02 1.95 16 40 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 41 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 42 H 0.05 2.75 6.12 -2.39 -0.01 2.74 16 43 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 44 H 0.05 1.81 8.14 -2.39 -0.02 1.80 16 45 H 0.10 1.19 7.76 -2.39 -0.02 1.17 16 46 H 0.06 0.78 7.82 -2.38 -0.02 0.76 16 47 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 48 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 49 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 50 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 51 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 52 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 53 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 54 H 0.03 0.83 7.38 -2.39 -0.02 0.81 16 55 H 0.06 1.30 7.56 -2.39 -0.02 1.28 16 Total: -1.00 -72.19 417.71 2.72 -69.47 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 0.16 Total: 16.78 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: 5.63 Total: 1.11 kcal Atomic # 7 Polarization: -100.93 SS G_CDS: -4.26 Total: -105.19 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -0.85 Total: -29.22 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -72.19 2.72 -69.47 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597294360.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.087 kcal (2) G-P(sol) polarization free energy of solvation -72.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds