Wall clock time and date at job start Tue Mar 31 2020 23:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 113.99775 * 2 1 4 4 H 1.08997 * 109.47103 * 2.51788 * 3 2 1 5 5 C 1.50696 * 109.46548 * 122.51373 * 3 2 1 6 6 O 1.21284 * 120.00435 * 5.05213 * 5 3 2 7 7 N 1.34780 * 119.99962 * 185.05365 * 5 3 2 8 8 C 1.46500 * 120.00383 * 174.85930 * 7 5 3 9 9 C 1.52998 * 109.47160 * 179.97438 * 8 7 5 10 10 H 1.08997 * 109.50420 * 54.99459 * 9 8 7 11 11 C 1.53042 * 109.49754 * 175.05885 * 9 8 7 12 12 C 1.53044 * 109.53922 * 181.30987 * 11 9 8 13 13 C 1.53189 * 109.31589 * 298.63856 * 12 11 9 14 14 N 1.46928 * 108.77417 * 54.63006 * 13 12 11 15 15 C 1.36938 * 120.62547 * 126.43221 * 14 13 12 16 16 H 1.08003 * 119.99954 * 212.00572 * 15 14 13 17 17 C 1.38808 * 120.00069 * 32.01274 * 15 14 13 18 18 N 1.31613 * 120.00195 * 9.90522 * 17 15 14 19 19 Si 1.86801 * 120.00030 * 189.90081 * 17 15 14 20 20 H 1.48506 * 109.46936 * 90.00080 * 19 17 15 21 21 H 1.48494 * 109.47565 * 209.99655 * 19 17 15 22 22 H 1.48503 * 109.47337 * 330.00386 * 19 17 15 23 23 C 1.46928 * 118.76958 * 306.41437 * 14 13 12 24 24 C 1.53001 * 109.47359 * 242.51181 * 3 2 1 25 25 C 1.53002 * 109.46848 * 65.48475 * 24 3 2 26 26 C 1.53001 * 109.46848 * 179.97438 * 25 24 3 27 27 C 1.52997 * 109.47122 * 60.00461 * 26 25 24 28 28 C 1.53003 * 109.47175 * 299.99766 * 27 26 25 29 29 C 1.52997 * 109.47122 * 305.48936 * 24 3 2 30 30 H 1.09005 * 109.46849 * 304.84677 * 1 2 3 31 31 H 1.08992 * 109.47485 * 64.84731 * 1 2 3 32 32 H 1.08997 * 109.47112 * 184.85435 * 1 2 3 33 33 H 0.97000 * 119.99840 * 354.84934 * 7 5 3 34 34 H 1.09006 * 109.46569 * 299.99613 * 8 7 5 35 35 H 1.08996 * 109.47446 * 59.99437 * 8 7 5 36 36 H 1.09002 * 109.46239 * 301.33550 * 11 9 8 37 37 H 1.08999 * 109.45803 * 61.30849 * 11 9 8 38 38 H 1.09001 * 109.49415 * 58.59086 * 12 11 9 39 39 H 1.09000 * 109.49701 * 178.64723 * 12 11 9 40 40 H 1.09001 * 109.58597 * 174.42031 * 13 12 11 41 41 H 1.08996 * 109.58756 * 294.84775 * 13 12 11 42 42 H 0.97002 * 120.00216 * 180.02562 * 18 17 15 43 43 H 1.08998 * 109.55977 * 293.78773 * 23 14 13 44 44 H 1.09003 * 109.62018 * 173.35664 * 23 14 13 45 45 H 1.08997 * 109.47101 * 185.48855 * 24 3 2 46 46 H 1.08997 * 109.47580 * 300.00086 * 25 24 3 47 47 H 1.09003 * 109.47069 * 60.00264 * 25 24 3 48 48 H 1.08997 * 109.47101 * 300.00379 * 26 25 24 49 49 H 1.09003 * 109.47194 * 180.02562 * 26 25 24 50 50 H 1.09002 * 109.46909 * 180.02562 * 27 26 25 51 51 H 1.08997 * 109.47200 * 59.99979 * 27 26 25 52 52 H 1.09006 * 109.47063 * 300.00395 * 28 27 26 53 53 H 1.08995 * 109.47494 * 180.02562 * 28 27 26 54 54 H 1.09003 * 109.46955 * 299.99985 * 29 24 3 55 55 H 1.09006 * 109.47447 * 59.99926 * 29 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2201 2.0550 0.0451 5 6 2.9121 1.4537 1.1981 6 8 3.1164 0.5042 1.9246 7 7 3.4918 2.6414 1.4625 8 6 4.2770 2.8170 2.6868 9 6 4.8209 4.2460 2.7432 10 1 3.9965 4.9530 2.6507 11 6 5.5365 4.4677 4.0777 12 6 6.0526 5.9068 4.1488 13 6 7.0574 6.1413 3.0165 14 7 6.4209 5.7907 1.7394 15 6 6.3968 6.6857 0.7032 16 1 5.5651 6.6918 0.0143 17 6 7.4414 7.5848 0.5382 18 7 8.5407 7.4543 1.2501 19 14 7.2869 8.9800 -0.6942 20 1 6.6986 10.1683 -0.0255 21 1 8.6311 9.3246 -1.2230 22 1 6.4082 8.5565 -1.8139 23 6 5.8111 4.4619 1.5945 24 6 2.8259 1.5007 -1.2796 25 6 1.8887 1.4863 -2.4890 26 6 2.7043 1.6821 -3.7685 27 6 3.7251 0.5501 -3.9009 28 6 4.6623 0.5645 -2.6916 29 6 3.8463 0.3683 -1.4117 30 1 -0.3633 0.5872 0.8434 31 1 -0.3634 0.4367 -0.9301 32 1 -0.3633 -1.0239 0.0870 33 1 3.3893 3.3799 0.8419 34 1 3.6427 2.6347 3.5543 35 1 5.1081 2.1119 2.6898 36 1 4.8399 4.2908 4.8972 37 1 6.3757 3.7769 4.1589 38 1 5.2169 6.5986 4.0427 39 1 6.5411 6.0710 5.1093 40 1 7.3530 7.1903 3.0017 41 1 7.9353 5.5142 3.1714 42 1 9.2705 8.0829 1.1351 43 1 6.5876 3.6979 1.6330 44 1 5.2843 4.4028 0.6420 45 1 3.3477 2.4566 -1.2356 46 1 1.3669 0.5303 -2.5330 47 1 1.1617 2.2930 -2.3949 48 1 3.2258 2.6382 -3.7243 49 1 2.0367 1.6723 -4.6301 50 1 4.3064 0.6899 -4.8123 51 1 3.2036 -0.4060 -3.9452 52 1 5.1837 1.5207 -2.6473 53 1 5.3898 -0.2417 -2.7861 54 1 4.5139 0.3785 -0.5501 55 1 3.3245 -0.5877 -1.4557 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598686996.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:37 Heat of formation + Delta-G solvation = -114.495035 kcal Electronic energy + Delta-G solvation = -31448.636719 eV Core-core repulsion = 27483.854156 eV Total energy + Delta-G solvation = -3964.782563 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.43094 -39.76704 -39.03343 -37.93569 -36.21024 -34.70585 -33.09943 -32.27494 -31.72211 -31.62560 -28.61492 -27.36209 -27.16341 -25.88649 -23.84808 -23.56013 -22.96018 -22.39422 -21.36015 -20.62122 -20.52320 -18.73331 -18.21996 -17.73605 -17.19752 -16.82721 -16.49200 -16.22312 -15.79204 -15.70498 -15.40539 -15.24727 -15.06919 -14.97281 -14.86578 -14.52339 -14.42160 -14.00805 -13.98512 -13.73261 -13.59620 -13.17574 -13.03411 -13.02398 -12.80625 -12.74882 -12.53427 -12.37814 -12.28592 -12.02069 -11.94171 -11.89273 -11.82147 -11.57108 -11.44813 -11.37153 -11.23630 -11.18786 -11.09568 -10.86320 -10.53379 -10.24316 -10.05891 -8.60371 -7.84243 -5.36979 1.48695 1.49131 1.57279 1.58057 2.00423 2.51655 2.96479 3.31866 3.57406 3.62247 3.62867 3.80495 3.92317 3.99925 4.00977 4.06555 4.07942 4.31519 4.37781 4.40905 4.41652 4.54506 4.57726 4.58834 4.59452 4.63446 4.66719 4.67236 4.75790 4.77219 4.87090 4.88596 4.90721 5.01142 5.02006 5.11149 5.16735 5.23867 5.24997 5.30107 5.31645 5.34055 5.38847 5.39095 5.42295 5.48759 5.59067 5.61250 5.68065 5.80820 6.08523 6.43151 6.55991 7.17889 7.22475 7.87070 8.41079 9.21389 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010424 B = 0.003369 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.336807 B = 8309.223876 C =10169.621937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.377 6.377 3 C 0.082 3.918 4 H 0.117 0.883 5 C 0.501 3.499 6 O -0.573 6.573 7 N -0.716 5.716 8 C 0.138 3.862 9 C -0.099 4.099 10 H 0.080 0.920 11 C -0.098 4.098 12 C -0.130 4.130 13 C 0.174 3.826 14 N -0.609 5.609 15 C -0.261 4.261 16 H 0.071 0.929 17 C -0.050 4.050 18 N -0.938 5.938 19 Si 0.968 3.032 20 H -0.285 1.285 21 H -0.299 1.299 22 H -0.264 1.264 23 C 0.155 3.845 24 C -0.089 4.089 25 C -0.106 4.106 26 C -0.119 4.119 27 C -0.116 4.116 28 C -0.121 4.121 29 C -0.103 4.103 30 H 0.045 0.955 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.411 0.589 34 H 0.072 0.928 35 H 0.050 0.950 36 H 0.080 0.920 37 H 0.051 0.949 38 H 0.054 0.946 39 H 0.067 0.933 40 H 0.052 0.948 41 H -0.010 1.010 42 H 0.248 0.752 43 H 0.001 0.999 44 H 0.058 0.942 45 H 0.086 0.914 46 H 0.069 0.931 47 H 0.080 0.920 48 H 0.060 0.940 49 H 0.076 0.924 50 H 0.065 0.935 51 H 0.063 0.937 52 H 0.055 0.945 53 H 0.058 0.942 54 H 0.031 0.969 55 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.720 -11.472 -5.730 21.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.295 6.295 3 C 0.021 3.979 4 H 0.135 0.865 5 C 0.287 3.713 6 O -0.452 6.452 7 N -0.369 5.369 8 C 0.014 3.986 9 C -0.119 4.119 10 H 0.098 0.902 11 C -0.136 4.136 12 C -0.169 4.169 13 C 0.049 3.951 14 N -0.332 5.332 15 C -0.391 4.391 16 H 0.089 0.911 17 C -0.245 4.245 18 N -0.584 5.584 19 Si 0.796 3.204 20 H -0.212 1.212 21 H -0.225 1.225 22 H -0.189 1.189 23 C 0.029 3.971 24 C -0.108 4.108 25 C -0.143 4.143 26 C -0.156 4.156 27 C -0.154 4.154 28 C -0.158 4.158 29 C -0.141 4.141 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.113 0.887 33 H 0.248 0.752 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.008 0.992 42 H 0.058 0.942 43 H 0.019 0.981 44 H 0.076 0.924 45 H 0.104 0.896 46 H 0.088 0.912 47 H 0.098 0.902 48 H 0.078 0.922 49 H 0.095 0.905 50 H 0.084 0.916 51 H 0.082 0.918 52 H 0.074 0.926 53 H 0.077 0.923 54 H 0.050 0.950 55 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.346 -12.233 -5.227 21.860 hybrid contribution 0.703 1.249 -0.510 1.521 sum -16.644 -10.984 -5.737 20.750 Atomic orbital electron populations 1.23138 0.79266 1.03979 1.01192 1.88001 1.21385 1.25551 1.94531 1.22140 0.96055 0.87825 0.91919 0.86531 1.21425 0.80893 0.82169 0.86771 1.90673 1.62982 1.39817 1.51717 1.46013 1.52349 1.13853 1.24735 1.21248 0.94465 0.96097 0.86779 1.21715 0.98466 0.94764 0.97000 0.90170 1.21341 0.99613 0.96355 0.96264 1.22008 0.99481 0.96882 0.98537 1.20615 0.91556 0.98861 0.84090 1.44255 1.66590 1.11644 1.10722 1.19545 1.01513 1.11584 1.06491 0.91099 1.25946 0.94581 1.03332 1.00654 1.70155 1.05560 1.38148 1.44576 0.85265 0.76465 0.79451 0.79251 1.21185 1.22540 1.18855 1.20999 0.93464 0.86100 0.96536 1.21515 0.96431 0.99647 0.93219 1.21540 0.97238 1.02873 0.92683 1.21531 0.97841 0.98507 0.97730 1.21517 0.97283 0.99339 0.97238 1.21553 0.97964 1.01494 0.94812 1.21369 0.96849 0.98949 0.96912 0.93619 0.91637 0.88681 0.75237 0.91006 0.93112 0.90184 0.92980 0.92690 0.91414 0.92952 0.99232 0.94246 0.98121 0.92378 0.89577 0.91222 0.90186 0.92167 0.90508 0.91600 0.91779 0.92641 0.92320 0.94995 0.91764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.71 113.37 1.21 1.50 16 2 O -0.38 -8.52 8.54 -129.99 -1.11 -9.63 16 3 C 0.08 1.67 2.33 29.85 0.07 1.74 16 4 H 0.12 1.66 7.60 -2.39 -0.02 1.64 16 5 C 0.50 13.80 6.18 87.66 0.54 14.34 16 6 O -0.57 -21.00 16.52 15.95 0.26 -20.73 16 7 N -0.72 -17.92 5.25 -463.06 -2.43 -20.35 16 8 C 0.14 3.84 5.07 86.38 0.44 4.28 16 9 C -0.10 -3.04 2.37 -10.72 -0.03 -3.06 16 10 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 11 C -0.10 -3.00 5.17 30.62 0.16 -2.84 16 12 C -0.13 -4.70 6.08 30.67 0.19 -4.51 16 13 C 0.17 8.36 5.25 86.36 0.45 8.82 16 14 N -0.61 -29.67 2.98 -699.09 -2.09 -31.76 16 15 C -0.26 -13.83 9.58 84.03 0.80 -13.03 16 16 H 0.07 3.57 7.85 -2.91 -0.02 3.54 16 17 C -0.05 -2.73 5.06 84.86 0.43 -2.30 16 18 N -0.94 -55.23 11.06 21.65 0.24 -54.99 16 19 Si 0.97 43.71 29.56 68.60 2.03 45.74 16 20 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 21 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 22 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 23 C 0.15 6.08 5.60 86.36 0.48 6.56 16 24 C -0.09 -1.68 1.99 -10.79 -0.02 -1.70 16 25 C -0.11 -1.50 5.10 30.60 0.16 -1.35 16 26 C -0.12 -1.72 5.92 30.59 0.18 -1.54 16 27 C -0.12 -1.91 5.92 30.59 0.18 -1.73 16 28 C -0.12 -2.50 5.93 30.61 0.18 -2.32 16 29 C -0.10 -2.40 4.82 30.61 0.15 -2.25 16 30 H 0.05 0.61 8.13 -2.38 -0.02 0.59 16 31 H 0.07 0.64 7.99 -2.39 -0.02 0.62 16 32 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.41 8.78 7.24 -92.71 -0.67 8.11 16 34 H 0.07 1.89 8.14 -2.38 -0.02 1.88 16 35 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.05 2.86 6.13 -2.39 -0.01 2.84 16 41 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 42 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 43 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 44 H 0.06 2.14 7.14 -2.39 -0.02 2.12 16 45 H 0.09 1.62 7.63 -2.39 -0.02 1.60 16 46 H 0.07 1.00 7.69 -2.39 -0.02 0.98 16 47 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 49 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 50 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 51 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 52 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 53 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 54 H 0.03 0.91 7.40 -2.39 -0.02 0.89 16 55 H 0.06 1.58 7.55 -2.38 -0.02 1.56 16 Total: -1.00 -70.02 417.39 2.65 -67.37 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: 0.16 Total: 23.73 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: 5.58 Total: 0.61 kcal Atomic # 7 Polarization: -102.82 SS G_CDS: -4.28 Total: -107.10 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -0.85 Total: -30.36 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -70.02 2.65 -67.37 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598686996.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.121 kcal (2) G-P(sol) polarization free energy of solvation -70.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds