Wall clock time and date at job start Tue Mar 31 2020 23:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42894 * 114.00089 * 2 1 4 4 H 1.09004 * 109.47429 * 329.38247 * 3 2 1 5 5 C 1.50699 * 109.47170 * 89.38518 * 3 2 1 6 6 O 1.21280 * 120.00118 * 4.99841 * 5 3 2 7 7 N 1.34776 * 120.00191 * 185.00186 * 5 3 2 8 8 C 1.46493 * 120.00303 * 179.97438 * 7 5 3 9 9 C 1.53004 * 109.47437 * 179.97438 * 8 7 5 10 10 H 1.09004 * 109.49630 * 305.00228 * 9 8 7 11 11 C 1.53038 * 109.50044 * 184.93497 * 9 8 7 12 12 C 1.53034 * 109.54099 * 178.68062 * 11 9 8 13 13 C 1.53193 * 109.30947 * 61.36772 * 12 11 9 14 14 N 1.46931 * 108.77533 * 305.36421 * 13 12 11 15 15 C 1.36941 * 120.62948 * 233.61198 * 14 13 12 16 16 H 1.07998 * 120.00029 * 151.50373 * 15 14 13 17 17 C 1.38808 * 119.99939 * 331.50080 * 15 14 13 18 18 N 1.31617 * 120.00327 * 344.89900 * 17 15 14 19 19 Si 1.86807 * 119.99941 * 164.89278 * 17 15 14 20 20 H 1.48505 * 109.46790 * 60.00066 * 19 17 15 21 21 H 1.48497 * 109.47199 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47064 * 300.00312 * 19 17 15 23 23 C 1.46930 * 118.76603 * 53.58755 * 14 13 12 24 24 C 1.53002 * 109.47293 * 209.38447 * 3 2 1 25 25 C 1.53000 * 109.46927 * 304.38889 * 24 3 2 26 26 C 1.52999 * 109.47421 * 179.97438 * 25 24 3 27 27 C 1.53004 * 109.46956 * 300.00513 * 26 25 24 28 28 C 1.53000 * 109.47475 * 59.99519 * 27 26 25 29 29 C 1.52996 * 109.47136 * 64.38960 * 24 3 2 30 30 H 1.09003 * 109.47075 * 64.74929 * 1 2 3 31 31 H 1.09003 * 109.47139 * 184.75108 * 1 2 3 32 32 H 1.09004 * 109.46743 * 304.74893 * 1 2 3 33 33 H 0.97007 * 120.00015 * 359.97438 * 7 5 3 34 34 H 1.09007 * 109.47149 * 300.00019 * 8 7 5 35 35 H 1.08999 * 109.47219 * 59.99756 * 8 7 5 36 36 H 1.08998 * 109.46113 * 298.70658 * 11 9 8 37 37 H 1.09004 * 109.45579 * 58.67377 * 11 9 8 38 38 H 1.09003 * 109.50169 * 181.31795 * 12 11 9 39 39 H 1.09003 * 109.50137 * 301.41590 * 12 11 9 40 40 H 1.08994 * 109.59093 * 65.15502 * 13 12 11 41 41 H 1.09010 * 109.58654 * 185.58197 * 13 12 11 42 42 H 0.97000 * 120.00086 * 180.02562 * 18 17 15 43 43 H 1.08994 * 109.62089 * 186.64313 * 23 14 13 44 44 H 1.09008 * 109.55806 * 66.21587 * 23 14 13 45 45 H 1.09002 * 109.47531 * 184.39308 * 24 3 2 46 46 H 1.08999 * 109.47478 * 300.00298 * 25 24 3 47 47 H 1.09001 * 109.46978 * 60.00341 * 25 24 3 48 48 H 1.09003 * 109.47674 * 180.02562 * 26 25 24 49 49 H 1.09003 * 109.47200 * 59.99795 * 26 25 24 50 50 H 1.09001 * 109.46793 * 299.99158 * 27 26 25 51 51 H 1.09001 * 109.47143 * 179.97438 * 27 26 25 52 52 H 1.08991 * 109.47192 * 179.97438 * 28 27 26 53 53 H 1.09002 * 109.46673 * 60.00140 * 28 27 26 54 54 H 1.09001 * 109.47407 * 300.00050 * 29 24 3 55 55 H 1.08994 * 109.47467 * 60.00047 * 29 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3501 1.9971 -0.5234 5 6 2.2006 1.7705 1.4207 6 8 1.9562 1.0208 2.3422 7 7 2.6425 3.0196 1.6674 8 6 2.8271 3.4720 3.0485 9 6 3.3331 4.9159 3.0490 10 1 4.2378 4.9845 2.4448 11 6 3.6432 5.3481 4.4840 12 6 4.1805 6.7810 4.4822 13 6 3.1131 7.7216 3.9140 14 7 2.7042 7.2288 2.5915 15 6 2.7400 8.0527 1.4983 16 1 2.8952 7.6369 0.5137 17 6 2.5768 9.4221 1.6556 18 7 2.0980 9.9026 2.7836 19 14 3.0369 10.5833 0.2665 20 1 2.2275 10.2613 -0.9363 21 1 2.7702 11.9835 0.6829 22 1 4.4792 10.4280 -0.0513 23 6 2.2565 5.8352 2.4636 24 6 3.3659 1.2601 -0.7078 25 6 4.2551 0.2094 -0.0397 26 6 5.6106 0.1636 -0.7478 27 6 5.4053 -0.2029 -2.2190 28 6 4.5161 0.8478 -2.8871 29 6 3.1611 0.8939 -2.1791 30 1 -0.3633 0.4384 -0.9295 31 1 -0.3633 -1.0242 0.0851 32 1 -0.3633 0.5858 0.8444 33 1 2.8384 3.6192 0.9304 34 1 1.8758 3.4198 3.5781 35 1 3.5555 2.8319 3.5462 36 1 2.7328 5.3023 5.0817 37 1 4.3916 4.6803 4.9106 38 1 4.4231 7.0799 5.5020 39 1 5.0771 6.8327 3.8645 40 1 2.2504 7.7401 4.5798 41 1 3.5250 8.7263 3.8182 42 1 1.9837 10.8595 2.8933 43 1 2.1035 5.5950 1.4115 44 1 1.3235 5.6999 3.0109 45 1 3.8443 2.2372 -0.6397 46 1 4.4010 0.4702 1.0085 47 1 3.7769 -0.7677 -0.1078 48 1 6.2440 -0.5853 -0.2722 49 1 6.0891 1.1406 -0.6802 50 1 4.9269 -1.1800 -2.2867 51 1 6.3709 -0.2351 -2.7237 52 1 4.3702 0.5869 -3.9353 53 1 4.9946 1.8248 -2.8194 54 1 2.6829 -0.0832 -2.2472 55 1 2.5277 1.6424 -2.6550 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598686998.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:41 Heat of formation + Delta-G solvation = -114.679978 kcal Electronic energy + Delta-G solvation = -31242.876642 eV Core-core repulsion = 27278.086060 eV Total energy + Delta-G solvation = -3964.790583 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.46340 -39.73853 -39.01485 -37.97111 -36.21068 -34.71189 -33.15060 -32.29146 -31.74036 -31.59963 -28.46501 -27.44935 -27.19356 -25.91426 -23.85104 -23.56018 -22.94620 -22.40358 -21.35885 -20.58496 -20.53331 -18.74575 -18.27866 -17.77286 -17.15856 -16.82813 -16.53397 -16.19176 -15.80050 -15.62810 -15.50988 -15.23806 -15.04100 -14.94213 -14.87160 -14.52296 -14.43115 -14.08382 -13.99653 -13.75026 -13.57767 -13.15865 -13.02781 -12.99478 -12.82885 -12.78862 -12.47893 -12.32677 -12.26788 -11.98780 -11.97332 -11.93777 -11.82298 -11.64312 -11.55718 -11.32281 -11.28011 -11.11559 -11.08907 -10.89853 -10.51686 -10.22997 -10.08370 -8.65818 -7.84872 -5.32423 1.48693 1.51191 1.56134 1.57479 2.08930 2.52387 2.80979 3.30366 3.57631 3.60479 3.64333 3.82612 3.91586 3.99079 4.00586 4.07135 4.11023 4.31935 4.39555 4.40537 4.43225 4.52140 4.53808 4.57072 4.59908 4.62830 4.67187 4.70141 4.75817 4.76834 4.82653 4.87661 4.90207 5.01131 5.03663 5.10153 5.18899 5.22937 5.27962 5.31824 5.32918 5.34143 5.38254 5.40341 5.44802 5.47787 5.58347 5.63917 5.67567 5.79619 6.01163 6.40719 6.54129 7.16501 7.20803 7.87480 8.39801 9.21117 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011275 B = 0.002917 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2482.716872 B = 9596.019227 C =10461.424086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.369 6.369 3 C 0.079 3.921 4 H 0.107 0.893 5 C 0.490 3.510 6 O -0.574 6.574 7 N -0.715 5.715 8 C 0.139 3.861 9 C -0.099 4.099 10 H 0.078 0.922 11 C -0.098 4.098 12 C -0.130 4.130 13 C 0.172 3.828 14 N -0.609 5.609 15 C -0.262 4.262 16 H 0.073 0.927 17 C -0.052 4.052 18 N -0.938 5.938 19 Si 0.967 3.033 20 H -0.273 1.273 21 H -0.298 1.298 22 H -0.277 1.277 23 C 0.154 3.846 24 C -0.074 4.074 25 C -0.105 4.105 26 C -0.117 4.117 27 C -0.118 4.118 28 C -0.118 4.118 29 C -0.107 4.107 30 H 0.064 0.936 31 H 0.099 0.901 32 H 0.028 0.972 33 H 0.411 0.589 34 H 0.053 0.947 35 H 0.068 0.932 36 H 0.053 0.947 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.053 0.947 40 H -0.009 1.009 41 H 0.053 0.947 42 H 0.249 0.751 43 H 0.059 0.941 44 H 0.004 0.996 45 H 0.095 0.905 46 H 0.037 0.963 47 H 0.059 0.941 48 H 0.061 0.939 49 H 0.063 0.937 50 H 0.059 0.941 51 H 0.069 0.931 52 H 0.073 0.927 53 H 0.065 0.935 54 H 0.065 0.935 55 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.238 -19.649 -9.555 22.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.286 6.286 3 C 0.017 3.983 4 H 0.124 0.876 5 C 0.276 3.724 6 O -0.453 6.453 7 N -0.368 5.368 8 C 0.014 3.986 9 C -0.119 4.119 10 H 0.097 0.903 11 C -0.136 4.136 12 C -0.169 4.169 13 C 0.047 3.953 14 N -0.332 5.332 15 C -0.392 4.392 16 H 0.090 0.910 17 C -0.247 4.247 18 N -0.584 5.584 19 Si 0.795 3.205 20 H -0.199 1.199 21 H -0.225 1.225 22 H -0.203 1.203 23 C 0.028 3.972 24 C -0.092 4.092 25 C -0.143 4.143 26 C -0.155 4.155 27 C -0.155 4.155 28 C -0.155 4.155 29 C -0.145 4.145 30 H 0.083 0.917 31 H 0.117 0.883 32 H 0.047 0.953 33 H 0.248 0.752 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.009 0.991 41 H 0.072 0.928 42 H 0.058 0.942 43 H 0.077 0.923 44 H 0.022 0.978 45 H 0.113 0.887 46 H 0.056 0.944 47 H 0.078 0.922 48 H 0.080 0.920 49 H 0.082 0.918 50 H 0.078 0.922 51 H 0.087 0.913 52 H 0.091 0.909 53 H 0.084 0.916 54 H 0.084 0.916 55 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.118 -20.197 -8.873 22.441 hybrid contribution -0.372 1.561 -0.250 1.624 sum 3.746 -18.636 -9.124 21.085 Atomic orbital electron populations 1.22987 0.79893 1.03859 1.00421 1.87951 1.20941 1.25429 1.94297 1.22255 0.98316 0.87001 0.90690 0.87553 1.21854 0.76140 0.81399 0.92972 1.90671 1.51888 1.55230 1.47535 1.46070 1.67050 1.14198 1.09527 1.21233 1.00524 0.94050 0.82771 1.21709 0.99619 0.92330 0.98263 0.90348 1.21338 1.00877 0.96150 0.95212 1.21998 0.98746 0.95898 1.00225 1.20645 0.93269 0.96627 0.84789 1.44292 1.75396 1.08039 1.05486 1.19535 1.42295 0.88857 0.88514 0.90962 1.25833 0.99935 0.99513 0.99419 1.70178 1.48536 1.12108 1.27605 0.85349 0.78446 0.77536 0.79163 1.19901 1.22473 1.20254 1.21014 0.93522 0.84229 0.98446 1.21311 0.91229 1.00741 0.95958 1.21401 0.95898 0.99229 0.97783 1.21531 0.96063 1.01804 0.96093 1.21532 1.00078 0.99024 0.94891 1.21524 0.95063 0.99521 0.99438 1.21506 0.98054 1.02433 0.92478 0.91722 0.88290 0.95298 0.75248 0.92826 0.91383 0.92835 0.90350 0.91391 0.92772 0.99107 0.92815 0.94238 0.92265 0.97842 0.88717 0.94376 0.92192 0.92019 0.91806 0.92226 0.91263 0.90874 0.91645 0.91596 0.90734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 10.79 113.37 1.22 1.67 16 2 O -0.37 -8.50 8.54 -129.99 -1.11 -9.61 16 3 C 0.08 1.63 2.20 29.85 0.07 1.70 16 4 H 0.11 1.75 7.83 -2.38 -0.02 1.73 16 5 C 0.49 13.21 6.05 87.66 0.53 13.74 16 6 O -0.57 -20.33 16.51 15.96 0.26 -20.06 16 7 N -0.71 -17.61 5.24 -463.07 -2.43 -20.04 16 8 C 0.14 3.80 5.07 86.38 0.44 4.24 16 9 C -0.10 -3.00 2.37 -10.72 -0.03 -3.03 16 10 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 11 C -0.10 -2.98 5.17 30.62 0.16 -2.83 16 12 C -0.13 -4.67 6.08 30.67 0.19 -4.49 16 13 C 0.17 8.21 5.29 86.36 0.46 8.67 16 14 N -0.61 -29.45 2.99 -699.06 -2.09 -31.54 16 15 C -0.26 -13.82 9.59 84.03 0.81 -13.01 16 16 H 0.07 3.61 7.87 -2.91 -0.02 3.59 16 17 C -0.05 -2.83 4.96 84.86 0.42 -2.41 16 18 N -0.94 -54.98 11.10 21.65 0.24 -54.74 16 19 Si 0.97 43.55 29.58 68.60 2.03 45.58 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 21 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 22 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 23 C 0.15 5.92 5.60 86.36 0.48 6.41 16 24 C -0.07 -1.28 2.01 -10.79 -0.02 -1.30 16 25 C -0.11 -2.13 4.82 30.59 0.15 -1.98 16 26 C -0.12 -1.91 5.92 30.60 0.18 -1.72 16 27 C -0.12 -1.60 5.92 30.60 0.18 -1.42 16 28 C -0.12 -1.49 5.92 30.58 0.18 -1.31 16 29 C -0.11 -1.51 5.09 30.58 0.16 -1.36 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.86 16 31 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.03 0.61 8.11 -2.38 -0.02 0.59 16 33 H 0.41 8.64 7.41 -92.70 -0.69 7.96 16 34 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 35 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 38 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 40 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 41 H 0.05 2.92 6.02 -2.38 -0.01 2.90 16 42 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 43 H 0.06 2.13 7.14 -2.39 -0.02 2.11 16 44 H 0.00 0.15 8.14 -2.38 -0.02 0.13 16 45 H 0.09 1.49 7.78 -2.39 -0.02 1.47 16 46 H 0.04 0.93 7.36 -2.39 -0.02 0.91 16 47 H 0.06 1.36 7.57 -2.39 -0.02 1.35 16 48 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 50 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 51 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 52 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 53 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 54 H 0.07 1.03 7.80 -2.39 -0.02 1.01 16 55 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -68.29 417.92 2.62 -65.67 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: 0.15 Total: 23.18 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: 5.57 Total: 1.56 kcal Atomic # 7 Polarization: -102.04 SS G_CDS: -4.28 Total: -106.32 kcal Atomic # 8 Polarization: -28.83 SS G_CDS: -0.85 Total: -29.67 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -68.29 2.62 -65.67 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598686998.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.014 kcal (2) G-P(sol) polarization free energy of solvation -68.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds