Wall clock time and date at job start Tue Mar 31 2020 23:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42903 * 114.00095 * 2 1 4 4 H 1.08994 * 109.47027 * 29.99647 * 3 2 1 5 5 C 1.50704 * 109.47063 * 270.00027 * 3 2 1 6 6 O 1.21283 * 119.99557 * 355.00025 * 5 3 2 7 7 N 1.34772 * 120.00218 * 174.99232 * 5 3 2 8 8 C 1.46504 * 120.00130 * 179.97438 * 7 5 3 9 9 C 1.53001 * 109.46877 * 180.02562 * 8 7 5 10 10 H 1.08997 * 109.49951 * 304.99758 * 9 8 7 11 11 C 1.53039 * 109.49551 * 184.93803 * 9 8 7 12 12 C 1.53037 * 109.53900 * 178.68461 * 11 9 8 13 13 C 1.53192 * 109.31276 * 61.36585 * 12 11 9 14 14 N 1.46927 * 108.77409 * 305.36442 * 13 12 11 15 15 C 1.36933 * 120.62821 * 233.61281 * 14 13 12 16 16 H 1.08008 * 120.00030 * 151.82954 * 15 14 13 17 17 C 1.38809 * 120.00469 * 331.82482 * 15 14 13 18 18 N 1.31621 * 119.99834 * 343.08168 * 17 15 14 19 19 Si 1.86794 * 120.00371 * 163.07900 * 17 15 14 20 20 H 1.48500 * 109.47203 * 90.00330 * 19 17 15 21 21 H 1.48507 * 109.47297 * 210.00180 * 19 17 15 22 22 H 1.48499 * 109.47204 * 330.00336 * 19 17 15 23 23 C 1.46934 * 118.76551 * 53.58770 * 14 13 12 24 24 C 1.52993 * 109.47513 * 150.00185 * 3 2 1 25 25 C 1.52997 * 109.47152 * 300.00160 * 24 3 2 26 26 C 1.53000 * 109.47396 * 180.02562 * 25 24 3 27 27 C 1.52999 * 109.47106 * 299.99805 * 26 25 24 28 28 C 1.53008 * 109.47167 * 59.99829 * 27 26 25 29 29 C 1.52999 * 109.47328 * 59.99952 * 24 3 2 30 30 H 1.08998 * 109.46962 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46931 * 299.99865 * 1 2 3 32 32 H 1.08996 * 109.47270 * 60.00413 * 1 2 3 33 33 H 0.97002 * 119.99995 * 0.02562 * 7 5 3 34 34 H 1.08994 * 109.47243 * 300.00664 * 8 7 5 35 35 H 1.08998 * 109.46882 * 60.00810 * 8 7 5 36 36 H 1.08999 * 109.46389 * 298.70577 * 11 9 8 37 37 H 1.09002 * 109.46542 * 58.67437 * 11 9 8 38 38 H 1.09000 * 109.49838 * 181.31622 * 12 11 9 39 39 H 1.08997 * 109.49943 * 301.41111 * 12 11 9 40 40 H 1.08990 * 109.58851 * 65.15213 * 13 12 11 41 41 H 1.09003 * 109.58555 * 185.58163 * 13 12 11 42 42 H 0.96996 * 120.00355 * 179.97438 * 18 17 15 43 43 H 1.08999 * 109.61477 * 186.64342 * 23 14 13 44 44 H 1.08999 * 109.55627 * 66.21300 * 23 14 13 45 45 H 1.09001 * 109.47429 * 179.97438 * 24 3 2 46 46 H 1.09001 * 109.47348 * 59.99467 * 25 24 3 47 47 H 1.09006 * 109.46973 * 300.00016 * 25 24 3 48 48 H 1.09000 * 109.47030 * 59.99766 * 26 25 24 49 49 H 1.08998 * 109.47097 * 179.97438 * 26 25 24 50 50 H 1.08995 * 109.47614 * 180.02562 * 27 26 25 51 51 H 1.09000 * 109.47144 * 299.99891 * 27 26 25 52 52 H 1.08990 * 109.46957 * 60.00062 * 28 27 26 53 53 H 1.08997 * 109.46591 * 180.02562 * 28 27 26 54 54 H 1.08998 * 109.47258 * 60.00120 * 29 24 3 55 55 H 1.09000 * 109.47144 * 300.00054 * 29 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2145 1.7644 -1.4209 6 8 1.9791 1.0105 -2.3413 7 7 2.6587 3.0124 -1.6687 8 6 2.8579 3.4583 -3.0499 9 6 3.3635 4.9024 -3.0517 10 1 2.6737 5.5302 -2.4878 11 6 3.4545 5.4099 -4.4926 12 6 3.9289 6.8649 -4.4938 13 6 5.3234 6.9436 -3.8646 14 7 5.2768 6.3252 -2.5326 15 6 5.7144 7.0093 -1.4301 16 1 5.2942 6.7937 -0.4588 17 6 6.6981 7.9800 -1.5607 18 7 7.4419 8.0212 -2.6458 19 14 6.9661 9.2277 -0.1967 20 1 7.9644 8.6999 0.7678 21 1 7.4653 10.4990 -0.7798 22 1 5.6819 9.4761 0.5063 23 6 4.7513 4.9589 -2.4054 24 6 3.3589 1.2633 0.7212 25 6 3.1515 0.7974 2.1636 26 6 4.5001 0.7559 2.8851 27 6 5.4345 -0.2178 2.1640 28 6 5.6419 0.2481 0.7214 29 6 4.2927 0.2894 -0.0001 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 2.8473 3.6153 -0.9325 34 1 3.5916 2.8161 -3.5368 35 1 1.9123 3.4035 -3.5893 36 1 4.1627 4.7966 -5.0497 37 1 2.4728 5.3479 -4.9622 38 1 3.9711 7.2329 -5.5189 39 1 3.2342 7.4746 -3.9162 40 1 6.0376 6.4090 -4.4908 41 1 5.6244 7.9872 -3.7726 42 1 8.1291 8.6996 -2.7373 43 1 4.6744 4.6932 -1.3511 44 1 5.4191 4.2624 -2.9122 45 1 3.8024 2.2590 0.7208 46 1 2.7082 -0.1983 2.1637 47 1 2.4862 1.4913 2.6775 48 1 4.9430 1.7519 2.8850 49 1 4.3523 0.4244 3.9128 50 1 6.3951 -0.2478 2.6782 51 1 4.9916 -1.2137 2.1641 52 1 6.0847 1.2440 0.7214 53 1 6.3071 -0.4458 0.2077 54 1 4.4405 0.6212 -1.0277 55 1 3.8494 -0.7064 0.0000 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598686999.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:45 Heat of formation + Delta-G solvation = -114.478731 kcal Electronic energy + Delta-G solvation = -31501.619196 eV Core-core repulsion = 27536.837340 eV Total energy + Delta-G solvation = -3964.781856 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.46566 -39.73173 -39.01072 -37.96692 -36.20565 -34.70759 -33.15165 -32.29028 -31.74946 -31.60142 -28.45462 -27.43194 -27.18748 -25.91798 -23.85056 -23.59027 -22.94989 -22.39820 -21.36627 -20.61496 -20.49695 -18.74660 -18.26242 -17.76273 -17.18016 -16.80707 -16.50655 -16.22479 -15.79029 -15.63907 -15.44682 -15.27656 -15.05739 -14.94332 -14.88249 -14.51574 -14.42004 -14.08028 -14.00625 -13.74340 -13.59253 -13.16007 -13.00734 -12.99941 -12.86868 -12.77037 -12.49422 -12.30438 -12.25225 -11.98193 -11.96854 -11.95842 -11.82488 -11.63816 -11.56152 -11.33466 -11.27630 -11.10005 -11.09329 -10.90370 -10.51791 -10.22390 -10.08029 -8.66252 -7.85222 -5.31132 1.48143 1.50119 1.56544 1.59133 2.10463 2.52678 2.82625 3.30208 3.57002 3.61664 3.63822 3.81776 3.90938 3.98900 4.00690 4.06871 4.10819 4.31295 4.39139 4.40203 4.43188 4.52765 4.56051 4.57546 4.59528 4.63110 4.66055 4.68626 4.75336 4.76425 4.85144 4.87656 4.89938 5.00934 5.01938 5.10258 5.17499 5.23053 5.26894 5.30677 5.32771 5.33253 5.38268 5.39574 5.43042 5.47797 5.57897 5.63325 5.67921 5.78596 6.03892 6.40428 6.55012 7.16475 7.21701 7.87706 8.40238 9.21275 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010449 B = 0.003377 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2679.142137 B = 8288.830891 C =10056.132641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.371 6.371 3 C 0.082 3.918 4 H 0.114 0.886 5 C 0.490 3.510 6 O -0.574 6.574 7 N -0.715 5.715 8 C 0.138 3.862 9 C -0.099 4.099 10 H 0.079 0.921 11 C -0.098 4.098 12 C -0.130 4.130 13 C 0.173 3.827 14 N -0.608 5.608 15 C -0.260 4.260 16 H 0.072 0.928 17 C -0.051 4.051 18 N -0.937 5.937 19 Si 0.965 3.035 20 H -0.285 1.285 21 H -0.297 1.297 22 H -0.267 1.267 23 C 0.155 3.845 24 C -0.076 4.076 25 C -0.103 4.103 26 C -0.119 4.119 27 C -0.117 4.117 28 C -0.120 4.120 29 C -0.105 4.105 30 H 0.099 0.901 31 H 0.066 0.934 32 H 0.030 0.970 33 H 0.411 0.589 34 H 0.051 0.949 35 H 0.070 0.930 36 H 0.052 0.948 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.055 0.945 40 H -0.010 1.010 41 H 0.052 0.948 42 H 0.248 0.752 43 H 0.059 0.941 44 H 0.002 0.998 45 H 0.092 0.908 46 H 0.068 0.932 47 H 0.078 0.922 48 H 0.061 0.939 49 H 0.076 0.924 50 H 0.066 0.934 51 H 0.062 0.938 52 H 0.057 0.943 53 H 0.058 0.942 54 H 0.033 0.967 55 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.247 -13.696 9.207 21.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.288 6.288 3 C 0.020 3.980 4 H 0.131 0.869 5 C 0.277 3.723 6 O -0.454 6.454 7 N -0.369 5.369 8 C 0.014 3.986 9 C -0.120 4.120 10 H 0.098 0.902 11 C -0.136 4.136 12 C -0.169 4.169 13 C 0.048 3.952 14 N -0.331 5.331 15 C -0.391 4.391 16 H 0.090 0.910 17 C -0.247 4.247 18 N -0.583 5.583 19 Si 0.793 3.207 20 H -0.212 1.212 21 H -0.223 1.223 22 H -0.191 1.191 23 C 0.029 3.971 24 C -0.094 4.094 25 C -0.141 4.141 26 C -0.156 4.156 27 C -0.154 4.154 28 C -0.158 4.158 29 C -0.143 4.143 30 H 0.117 0.883 31 H 0.085 0.915 32 H 0.048 0.952 33 H 0.247 0.753 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.008 0.992 41 H 0.070 0.930 42 H 0.057 0.943 43 H 0.077 0.923 44 H 0.019 0.981 45 H 0.110 0.890 46 H 0.087 0.913 47 H 0.097 0.903 48 H 0.080 0.920 49 H 0.094 0.906 50 H 0.084 0.916 51 H 0.081 0.919 52 H 0.075 0.925 53 H 0.076 0.924 54 H 0.052 0.948 55 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.186 -14.310 8.529 21.246 hybrid contribution 0.751 1.256 0.205 1.478 sum -12.435 -13.054 8.734 20.033 Atomic orbital electron populations 1.23005 0.79727 1.04047 1.00416 1.87965 1.21137 1.25422 1.94267 1.22225 0.98048 0.87135 0.90567 0.86893 1.21865 0.76152 0.81333 0.92996 1.90672 1.52296 1.54759 1.47636 1.46074 1.66865 1.14400 1.09539 1.21232 1.00357 0.94180 0.82821 1.21711 0.97847 0.94285 0.98109 0.90239 1.21340 1.01345 0.95736 0.95161 1.21995 0.97899 0.96863 1.00098 1.20619 0.92548 0.97496 0.84575 1.44300 1.73009 1.11719 1.04114 1.19541 1.14356 1.16059 0.89096 0.90987 1.25801 0.95848 1.03385 0.99631 1.70200 1.22080 1.35802 1.30260 0.85320 0.78088 0.78438 0.78870 1.21220 1.22306 1.19118 1.20995 0.92183 0.85607 0.98322 1.21315 0.91378 1.00710 0.96044 1.21479 0.97793 1.02341 0.92459 1.21541 0.95090 0.99719 0.99281 1.21521 0.99925 0.99318 0.94656 1.21543 0.96327 1.01329 0.96566 1.21417 0.95664 0.99778 0.97413 0.88301 0.91531 0.95156 0.75264 0.93084 0.91168 0.92940 0.90237 0.91367 0.92652 0.99180 0.92989 0.94264 0.92295 0.98051 0.89018 0.91329 0.90319 0.92016 0.90579 0.91551 0.91906 0.92466 0.92357 0.94794 0.92030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 10.81 113.37 1.23 1.63 16 2 O -0.37 -8.34 8.54 -129.99 -1.11 -9.45 16 3 C 0.08 1.66 2.26 29.85 0.07 1.73 16 4 H 0.11 1.63 7.79 -2.39 -0.02 1.61 16 5 C 0.49 13.15 5.87 87.66 0.51 13.67 16 6 O -0.57 -20.31 16.51 15.95 0.26 -20.05 16 7 N -0.72 -17.61 5.29 -463.06 -2.45 -20.06 16 8 C 0.14 3.80 5.07 86.38 0.44 4.24 16 9 C -0.10 -3.01 2.37 -10.72 -0.03 -3.04 16 10 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 11 C -0.10 -2.98 5.17 30.62 0.16 -2.82 16 12 C -0.13 -4.65 6.08 30.67 0.19 -4.47 16 13 C 0.17 8.25 5.30 86.36 0.46 8.71 16 14 N -0.61 -29.46 2.99 -699.09 -2.09 -31.55 16 15 C -0.26 -13.76 9.58 84.03 0.81 -12.95 16 16 H 0.07 3.61 7.89 -2.91 -0.02 3.59 16 17 C -0.05 -2.81 4.92 84.86 0.42 -2.39 16 18 N -0.94 -55.08 11.20 21.65 0.24 -54.84 16 19 Si 0.96 43.63 29.59 68.60 2.03 45.66 16 20 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 21 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 22 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 23 C 0.15 6.01 5.60 86.36 0.48 6.49 16 24 C -0.08 -1.44 2.04 -10.80 -0.02 -1.47 16 25 C -0.10 -1.56 5.06 30.59 0.15 -1.41 16 26 C -0.12 -1.78 5.92 30.59 0.18 -1.60 16 27 C -0.12 -1.98 5.92 30.60 0.18 -1.79 16 28 C -0.12 -2.52 5.93 30.61 0.18 -2.34 16 29 C -0.11 -2.46 4.81 30.61 0.15 -2.31 16 30 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.07 0.75 8.08 -2.39 -0.02 0.74 16 32 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.41 8.64 7.48 -92.71 -0.69 7.95 16 34 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 40 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 41 H 0.05 2.82 6.06 -2.39 -0.01 2.80 16 42 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 43 H 0.06 2.14 7.14 -2.39 -0.02 2.12 16 44 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 45 H 0.09 1.69 7.92 -2.39 -0.02 1.67 16 46 H 0.07 1.12 7.68 -2.39 -0.02 1.10 16 47 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 48 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 50 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 51 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 52 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 53 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 54 H 0.03 0.96 7.22 -2.39 -0.02 0.95 16 55 H 0.06 1.56 7.68 -2.39 -0.02 1.54 16 Total: -1.00 -68.89 417.95 2.58 -66.32 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: 0.14 Total: 24.11 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: 5.55 Total: -0.13 kcal Atomic # 7 Polarization: -102.15 SS G_CDS: -4.30 Total: -106.45 kcal Atomic # 8 Polarization: -28.66 SS G_CDS: -0.85 Total: -29.50 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -68.89 2.58 -66.32 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598686999.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.161 kcal (2) G-P(sol) polarization free energy of solvation -68.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds