Wall clock time and date at job start Tue Mar 31 2020 23:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 114.00160 * 2 1 4 4 H 1.09003 * 109.47447 * 30.00025 * 3 2 1 5 5 C 1.50697 * 109.47104 * 269.99939 * 3 2 1 6 6 O 1.21285 * 119.99828 * 354.99833 * 5 3 2 7 7 N 1.34777 * 120.00425 * 174.99780 * 5 3 2 8 8 C 1.46497 * 120.00414 * 180.02562 * 7 5 3 9 9 C 1.52998 * 109.47374 * 179.97438 * 8 7 5 10 10 H 1.09008 * 109.49315 * 54.93517 * 9 8 7 11 11 C 1.53038 * 109.50051 * 174.99865 * 9 8 7 12 12 C 1.53039 * 109.53982 * 181.31785 * 11 9 8 13 13 C 1.53192 * 109.31302 * 298.63467 * 12 11 9 14 14 N 1.46926 * 108.77065 * 54.63628 * 13 12 11 15 15 C 1.36945 * 120.62840 * 126.41236 * 14 13 12 16 16 H 1.07997 * 119.99638 * 207.67010 * 15 14 13 17 17 C 1.38818 * 119.99690 * 27.67643 * 15 14 13 18 18 N 1.31614 * 120.00176 * 17.34935 * 17 15 14 19 19 Si 1.86804 * 119.99495 * 197.35336 * 17 15 14 20 20 H 1.48505 * 109.46927 * 59.99635 * 19 17 15 21 21 H 1.48493 * 109.46923 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.46943 * 299.99988 * 19 17 15 23 23 C 1.46918 * 118.74184 * 306.38754 * 14 13 12 24 24 C 1.53006 * 109.47581 * 149.99887 * 3 2 1 25 25 C 1.53003 * 109.46721 * 59.99546 * 24 3 2 26 26 C 1.53006 * 109.46721 * 180.02562 * 25 24 3 27 27 C 1.52994 * 109.46745 * 60.00668 * 26 25 24 28 28 C 1.53004 * 109.47230 * 299.99669 * 27 26 25 29 29 C 1.52992 * 109.47278 * 60.00177 * 28 27 26 30 30 H 1.08992 * 109.46897 * 60.00180 * 1 2 3 31 31 H 1.09005 * 109.46968 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46667 * 299.99989 * 1 2 3 33 33 H 0.97009 * 119.99591 * 359.97438 * 7 5 3 34 34 H 1.09002 * 109.47178 * 299.99943 * 8 7 5 35 35 H 1.09001 * 109.47250 * 60.00126 * 8 7 5 36 36 H 1.09002 * 109.46060 * 301.34142 * 11 9 8 37 37 H 1.09000 * 109.46190 * 61.31002 * 11 9 8 38 38 H 1.09005 * 109.49562 * 58.58820 * 12 11 9 39 39 H 1.08998 * 109.49842 * 178.64784 * 12 11 9 40 40 H 1.09003 * 109.58432 * 174.42133 * 13 12 11 41 41 H 1.08991 * 109.58749 * 294.84476 * 13 12 11 42 42 H 0.97006 * 119.99552 * 180.02562 * 18 17 15 43 43 H 1.08999 * 109.59062 * 293.82649 * 23 14 13 44 44 H 1.09000 * 109.59078 * 173.40119 * 23 14 13 45 45 H 1.08995 * 109.46989 * 179.97438 * 24 3 2 46 46 H 1.08996 * 109.47767 * 300.00412 * 25 24 3 47 47 H 1.09003 * 109.47006 * 60.00664 * 25 24 3 48 48 H 1.08995 * 109.46989 * 300.00262 * 26 25 24 49 49 H 1.09003 * 109.46618 * 180.02562 * 26 25 24 50 50 H 1.08997 * 109.46942 * 179.97438 * 27 26 25 51 51 H 1.08999 * 109.47831 * 59.99545 * 27 26 25 52 52 H 1.09000 * 109.46776 * 300.00096 * 28 27 26 53 53 H 1.08999 * 109.46953 * 180.02562 * 28 27 26 54 54 H 1.08993 * 109.47426 * 180.02562 * 29 28 27 55 55 H 1.09000 * 109.47282 * 60.00230 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2146 1.7643 -1.4208 6 8 1.9792 1.0104 -2.3413 7 7 2.6589 3.0123 -1.6686 8 6 2.8570 3.4586 -3.0499 9 6 3.3619 4.9029 -3.0518 10 1 4.2597 4.9752 -2.4379 11 6 3.6875 5.3283 -4.4853 12 6 4.2236 6.7617 -4.4845 13 6 3.1493 7.7042 -3.9328 14 7 2.7261 7.2174 -2.6127 15 6 2.7487 8.0468 -1.5232 16 1 2.8800 7.6348 -0.5336 17 6 2.6027 9.4171 -1.6909 18 7 2.1098 9.8938 -2.8143 19 14 3.1060 10.5843 -0.3220 20 1 4.5515 10.4105 -0.0298 21 1 2.8521 11.9843 -0.7471 22 1 2.3148 10.2859 0.8987 23 6 2.2778 5.8243 -2.4837 24 6 3.3590 1.2633 0.7213 25 6 4.2927 0.2891 0.0001 26 6 5.6412 0.2465 0.7217 27 6 5.4332 -0.2197 2.1640 28 6 4.4994 0.7543 2.8852 29 6 3.1510 0.7970 2.1636 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.8468 3.6154 -0.9324 34 1 3.5904 2.8164 -3.5376 35 1 1.9110 3.4041 -3.5885 36 1 4.4411 4.6590 -4.9004 37 1 2.7839 5.2791 -5.0929 38 1 5.1133 6.8171 -3.8571 39 1 4.4779 7.0556 -5.5029 40 1 3.5593 8.7096 -3.8374 41 1 2.2941 7.7187 -4.6083 42 1 2.0082 10.8513 -2.9315 43 1 1.3515 5.6854 -3.0411 44 1 2.1127 5.5893 -1.4323 45 1 3.8025 2.2589 0.7208 46 1 3.8494 -0.7066 0.0000 47 1 4.4406 0.6211 -1.0276 48 1 6.0847 1.2422 0.7220 49 1 6.3066 -0.4471 0.2076 50 1 6.3939 -0.2505 2.6779 51 1 4.9896 -1.2153 2.1637 52 1 4.9430 1.7500 2.8856 53 1 4.3516 0.4224 3.9128 54 1 2.4859 1.4912 2.6771 55 1 2.7074 -0.1986 2.1632 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598687000.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:50 Heat of formation + Delta-G solvation = -114.563973 kcal Electronic energy + Delta-G solvation = -31256.858467 eV Core-core repulsion = 27292.072914 eV Total energy + Delta-G solvation = -3964.785552 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.46848 -39.73758 -39.00730 -37.97443 -36.20918 -34.71003 -33.15094 -32.29629 -31.74542 -31.59176 -28.46330 -27.44750 -27.19090 -25.91809 -23.85339 -23.57212 -22.94152 -22.40520 -21.35993 -20.59770 -20.51544 -18.74401 -18.27068 -17.77442 -17.16660 -16.82207 -16.54294 -16.18702 -15.80171 -15.62547 -15.51732 -15.23704 -15.03922 -14.93908 -14.87869 -14.52230 -14.42425 -14.08797 -14.00306 -13.75242 -13.57937 -13.15846 -13.02238 -12.99012 -12.84671 -12.77689 -12.47255 -12.32966 -12.27242 -11.97717 -11.97116 -11.95260 -11.82291 -11.64801 -11.55955 -11.32326 -11.28286 -11.10882 -11.08434 -10.89439 -10.51243 -10.23283 -10.08170 -8.67521 -7.85598 -5.31166 1.48578 1.51330 1.56723 1.57584 2.09123 2.52527 2.81415 3.29365 3.57413 3.60455 3.64072 3.82776 3.91787 3.98927 4.00672 4.07038 4.11183 4.32261 4.39779 4.40256 4.43172 4.51419 4.54486 4.57088 4.59904 4.62908 4.66922 4.70030 4.75723 4.76347 4.82851 4.87499 4.90052 5.00841 5.03621 5.10041 5.18636 5.22762 5.28125 5.31736 5.32770 5.34141 5.38168 5.40253 5.44677 5.47732 5.57775 5.64108 5.67500 5.78486 6.01413 6.39754 6.54478 7.15901 7.21238 7.87390 8.39615 9.20661 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011339 B = 0.002912 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.699805 B = 9612.835115 C =10442.660747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.369 6.369 3 C 0.078 3.922 4 H 0.107 0.893 5 C 0.490 3.510 6 O -0.574 6.574 7 N -0.715 5.715 8 C 0.139 3.861 9 C -0.099 4.099 10 H 0.078 0.922 11 C -0.098 4.098 12 C -0.129 4.129 13 C 0.172 3.828 14 N -0.609 5.609 15 C -0.262 4.262 16 H 0.073 0.927 17 C -0.052 4.052 18 N -0.937 5.937 19 Si 0.966 3.034 20 H -0.277 1.277 21 H -0.298 1.298 22 H -0.273 1.273 23 C 0.153 3.847 24 C -0.074 4.074 25 C -0.106 4.106 26 C -0.117 4.117 27 C -0.118 4.118 28 C -0.118 4.118 29 C -0.106 4.106 30 H 0.027 0.973 31 H 0.100 0.900 32 H 0.064 0.936 33 H 0.411 0.589 34 H 0.068 0.932 35 H 0.053 0.947 36 H 0.078 0.922 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.068 0.932 40 H 0.052 0.948 41 H -0.009 1.009 42 H 0.249 0.751 43 H 0.004 0.996 44 H 0.059 0.941 45 H 0.096 0.904 46 H 0.057 0.943 47 H 0.038 0.962 48 H 0.064 0.936 49 H 0.061 0.939 50 H 0.069 0.931 51 H 0.058 0.942 52 H 0.065 0.935 53 H 0.072 0.928 54 H 0.074 0.926 55 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.245 -19.650 9.638 22.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.286 6.286 3 C 0.017 3.983 4 H 0.125 0.875 5 C 0.277 3.723 6 O -0.454 6.454 7 N -0.368 5.368 8 C 0.014 3.986 9 C -0.119 4.119 10 H 0.097 0.903 11 C -0.136 4.136 12 C -0.168 4.168 13 C 0.047 3.953 14 N -0.332 5.332 15 C -0.393 4.393 16 H 0.091 0.909 17 C -0.247 4.247 18 N -0.583 5.583 19 Si 0.794 3.206 20 H -0.203 1.203 21 H -0.225 1.225 22 H -0.199 1.199 23 C 0.028 3.972 24 C -0.092 4.092 25 C -0.144 4.144 26 C -0.155 4.155 27 C -0.155 4.155 28 C -0.155 4.155 29 C -0.144 4.144 30 H 0.046 0.954 31 H 0.119 0.881 32 H 0.083 0.917 33 H 0.247 0.753 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.071 0.929 41 H 0.009 0.991 42 H 0.058 0.942 43 H 0.022 0.978 44 H 0.077 0.923 45 H 0.114 0.886 46 H 0.076 0.924 47 H 0.057 0.943 48 H 0.083 0.917 49 H 0.079 0.921 50 H 0.088 0.912 51 H 0.077 0.923 52 H 0.084 0.916 53 H 0.091 0.909 54 H 0.092 0.908 55 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.131 -20.203 8.955 22.482 hybrid contribution -0.358 1.565 0.226 1.621 sum 3.774 -18.638 9.181 21.117 Atomic orbital electron populations 1.22995 0.79871 1.04048 1.00276 1.87949 1.20955 1.25451 1.94275 1.22267 0.98342 0.87009 0.90692 0.87538 1.21838 0.76116 0.81395 0.92940 1.90672 1.52145 1.54936 1.47606 1.46069 1.67028 1.14204 1.09543 1.21230 1.00467 0.94100 0.82773 1.21707 0.99574 0.92324 0.98303 0.90324 1.21340 1.00862 0.96151 0.95229 1.21994 0.98696 0.95876 1.00277 1.20633 0.93210 0.96606 0.84879 1.44301 1.75022 1.07942 1.05909 1.19533 1.42780 0.88635 0.88302 0.90940 1.25799 1.00014 0.99448 0.99422 1.70199 1.47892 1.12148 1.28078 0.85365 0.78524 0.77556 0.79160 1.20293 1.22485 1.19889 1.21009 0.93507 0.84222 0.98476 1.21319 0.91133 1.00992 0.95800 1.21430 0.95800 0.99551 0.97631 1.21525 0.96058 1.01703 0.96176 1.21529 0.99896 0.99121 0.94989 1.21533 0.94901 0.99959 0.99132 1.21493 0.98026 1.02135 0.92732 0.95399 0.88120 0.91742 0.75252 0.91380 0.92852 0.90333 0.92837 0.92745 0.91366 0.92944 0.99078 0.94236 0.97850 0.92272 0.88550 0.92406 0.94293 0.91714 0.92070 0.91250 0.92305 0.91588 0.90897 0.90765 0.91628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 10.81 113.37 1.23 1.67 16 2 O -0.37 -8.50 8.54 -129.99 -1.11 -9.61 16 3 C 0.08 1.62 2.25 29.85 0.07 1.68 16 4 H 0.11 1.74 7.79 -2.39 -0.02 1.72 16 5 C 0.49 13.22 5.87 87.66 0.51 13.73 16 6 O -0.57 -20.36 16.51 15.95 0.26 -20.09 16 7 N -0.71 -17.59 5.29 -463.07 -2.45 -20.04 16 8 C 0.14 3.80 5.07 86.38 0.44 4.23 16 9 C -0.10 -2.99 2.37 -10.72 -0.03 -3.02 16 10 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 11 C -0.10 -2.98 5.17 30.62 0.16 -2.82 16 12 C -0.13 -4.65 6.08 30.67 0.19 -4.47 16 13 C 0.17 8.20 5.31 86.36 0.46 8.65 16 14 N -0.61 -29.40 2.99 -699.12 -2.09 -31.50 16 15 C -0.26 -13.85 9.59 84.03 0.81 -13.04 16 16 H 0.07 3.62 7.89 -2.91 -0.02 3.60 16 17 C -0.05 -2.81 4.91 84.86 0.42 -2.40 16 18 N -0.94 -54.95 11.19 21.65 0.24 -54.71 16 19 Si 0.97 43.55 29.59 68.60 2.03 45.58 16 20 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 21 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 23 C 0.15 5.92 5.60 86.36 0.48 6.40 16 24 C -0.07 -1.27 2.04 -10.79 -0.02 -1.30 16 25 C -0.11 -2.15 4.81 30.60 0.15 -2.01 16 26 C -0.12 -1.91 5.92 30.59 0.18 -1.73 16 27 C -0.12 -1.61 5.92 30.59 0.18 -1.43 16 28 C -0.12 -1.49 5.92 30.59 0.18 -1.31 16 29 C -0.11 -1.51 5.06 30.59 0.15 -1.35 16 30 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 32 H 0.06 0.87 8.08 -2.39 -0.02 0.85 16 33 H 0.41 8.62 7.49 -92.70 -0.69 7.93 16 34 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 39 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.05 2.84 6.04 -2.39 -0.01 2.82 16 41 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 42 H 0.25 14.21 8.31 -92.70 -0.77 13.44 16 43 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 44 H 0.06 2.13 7.14 -2.39 -0.02 2.11 16 45 H 0.10 1.49 7.92 -2.39 -0.02 1.47 16 46 H 0.06 1.34 7.68 -2.39 -0.02 1.32 16 47 H 0.04 0.95 7.22 -2.39 -0.02 0.93 16 48 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 50 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 51 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 52 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 53 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 54 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 55 H 0.06 1.05 7.68 -2.39 -0.02 1.03 16 Total: -1.00 -68.42 417.93 2.57 -65.85 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: 0.14 Total: 23.00 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: 5.55 Total: 1.51 kcal Atomic # 7 Polarization: -101.94 SS G_CDS: -4.30 Total: -106.24 kcal Atomic # 8 Polarization: -28.85 SS G_CDS: -0.85 Total: -29.70 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -68.42 2.57 -65.85 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598687000.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.714 kcal (2) G-P(sol) polarization free energy of solvation -68.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds