Wall clock time and date at job start Tue Mar 31 2020 22:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42893 * 114.00110 * 2 1 4 4 C 1.53004 * 109.47162 * 179.97438 * 3 2 1 5 5 C 1.50695 * 109.47171 * 299.99797 * 4 3 2 6 6 O 1.21277 * 119.99883 * 240.00295 * 5 4 3 7 7 N 1.34781 * 119.99667 * 59.72124 * 5 4 3 8 8 C 1.46499 * 119.99662 * 180.27355 * 7 5 4 9 9 C 1.53000 * 109.47345 * 180.02562 * 8 7 5 10 10 C 1.53045 * 109.45899 * 295.07398 * 9 8 7 11 11 C 1.53187 * 109.31478 * 178.61415 * 10 9 8 12 12 N 1.46927 * 108.77702 * 54.62975 * 11 10 9 13 13 C 1.36938 * 120.62999 * 126.41523 * 12 11 10 14 14 H 1.07997 * 119.99848 * 332.61233 * 13 12 11 15 15 C 1.38812 * 119.99872 * 152.60960 * 13 12 11 16 16 N 1.31621 * 119.99970 * 159.34641 * 15 13 12 17 17 Si 1.86800 * 120.00146 * 339.34287 * 15 13 12 18 18 H 1.48503 * 109.47250 * 92.94192 * 17 15 13 19 19 H 1.48495 * 109.47547 * 212.94477 * 17 15 13 20 20 H 1.48501 * 109.47323 * 332.94262 * 17 15 13 21 21 C 1.46928 * 118.73893 * 306.39238 * 12 11 10 22 22 C 1.53041 * 109.46435 * 175.00409 * 9 8 7 23 23 C 1.53000 * 109.46869 * 60.00003 * 4 3 2 24 24 C 1.53004 * 109.46869 * 180.02562 * 23 4 3 25 25 C 1.52996 * 109.47017 * 299.99746 * 24 23 4 26 26 C 1.53000 * 109.47093 * 60.00391 * 25 24 23 27 27 C 1.52996 * 109.47017 * 179.97438 * 4 3 2 28 28 H 1.08998 * 109.47290 * 299.99751 * 1 2 3 29 29 H 1.08999 * 109.47310 * 60.00331 * 1 2 3 30 30 H 1.09008 * 109.47197 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47448 * 59.99911 * 3 2 1 32 32 H 1.09008 * 109.46624 * 299.99528 * 3 2 1 33 33 H 0.96998 * 120.00222 * 0.28141 * 7 5 4 34 34 H 1.09000 * 109.47607 * 300.00350 * 8 7 5 35 35 H 1.09001 * 109.47467 * 60.00336 * 8 7 5 36 36 H 1.08997 * 109.45725 * 55.02515 * 9 8 7 37 37 H 1.09001 * 109.49352 * 298.56027 * 10 9 8 38 38 H 1.08994 * 109.49901 * 58.65813 * 10 9 8 39 39 H 1.09007 * 109.58710 * 294.84506 * 11 10 9 40 40 H 1.08997 * 109.70579 * 174.49058 * 11 10 9 41 41 H 0.97003 * 120.00024 * 179.97438 * 16 15 13 42 42 H 1.08995 * 109.58924 * 293.82164 * 21 12 11 43 43 H 1.08999 * 109.70247 * 173.46533 * 21 12 11 44 44 H 1.09003 * 109.49009 * 301.33558 * 22 9 8 45 45 H 1.08994 * 109.49926 * 61.39767 * 22 9 8 46 46 H 1.09003 * 109.47138 * 299.99619 * 23 4 3 47 47 H 1.08998 * 109.47941 * 59.99763 * 23 4 3 48 48 H 1.08999 * 109.47001 * 179.97438 * 24 23 4 49 49 H 1.09005 * 109.46937 * 60.00091 * 24 23 4 50 50 H 1.08995 * 109.47427 * 299.99965 * 25 24 23 51 51 H 1.09007 * 109.46736 * 180.02562 * 25 24 23 52 52 H 1.09003 * 109.47138 * 180.02562 * 26 25 24 53 53 H 1.08995 * 109.47332 * 59.99516 * 26 25 24 54 54 H 1.09005 * 109.47549 * 299.99971 * 27 4 3 55 55 H 1.08999 * 109.47315 * 60.00094 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 3.9797 0.4370 1.2314 6 8 4.7209 0.9697 2.0299 7 7 3.5486 -0.8216 1.4476 8 6 3.9756 -1.5462 2.6471 9 6 3.3493 -2.9421 2.6497 10 6 1.8285 -2.8184 2.7692 11 6 1.2024 -4.2161 2.7367 12 7 1.8252 -5.0378 3.7835 13 6 1.0552 -5.6864 4.7117 14 1 0.0868 -5.2914 4.9810 15 6 1.5193 -6.8517 5.3064 16 7 1.0109 -7.2535 6.4520 17 14 2.8654 -7.8495 4.4807 18 1 4.1886 -7.4244 5.0041 19 1 2.6596 -9.2918 4.7681 20 1 2.8184 -7.6257 3.0134 21 6 3.2898 -5.1507 3.8151 22 6 3.8925 -3.7425 3.8357 23 6 3.9874 0.4250 -1.2483 24 6 5.5126 0.3037 -1.2473 25 6 6.1354 1.7011 -1.2471 26 6 5.6835 2.4606 0.0019 27 6 4.1578 2.5822 0.0000 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8462 -0.8901 33 1 2.9557 -1.2476 0.8089 34 1 5.0619 -1.6357 2.6501 35 1 3.6535 -1.0015 3.5346 36 1 3.5998 -3.4542 1.7207 37 1 1.5762 -2.3286 3.7097 38 1 1.4450 -2.2285 1.9369 39 1 1.3769 -4.6721 1.7621 40 1 0.1303 -4.1429 2.9191 41 1 1.3350 -8.0680 6.8674 42 1 3.6345 -5.6829 2.9285 43 1 3.5973 -5.6929 4.7093 44 1 4.9779 -3.8102 3.7622 45 1 3.6212 -3.2437 4.7660 46 1 3.5441 -0.5708 -1.2482 47 1 3.6661 0.9657 -2.1386 48 1 5.8345 -0.2378 -2.1368 49 1 5.8335 -0.2374 -0.3571 50 1 5.8146 2.2421 -2.1372 51 1 7.2220 1.6146 -1.2468 52 1 6.1269 3.4564 0.0018 53 1 6.0043 1.9197 0.8921 54 1 3.8365 3.1227 -0.8905 55 1 3.8359 3.1237 0.8895 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598688534.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:12 Heat of formation + Delta-G solvation = -105.219686 kcal Electronic energy + Delta-G solvation = -32000.513004 eV Core-core repulsion = 28036.132650 eV Total energy + Delta-G solvation = -3964.380354 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.86686 -39.80318 -38.70835 -37.95656 -36.37699 -34.54020 -33.33186 -32.63708 -31.88547 -31.51829 -28.54736 -27.95884 -26.04120 -25.75682 -24.47862 -23.55173 -23.49650 -22.58931 -21.63820 -20.99252 -20.19320 -18.74537 -17.69972 -17.33335 -17.18999 -17.14094 -16.55752 -16.30806 -16.11725 -15.85660 -15.51226 -15.29251 -15.17081 -15.03539 -14.89133 -14.54740 -14.48365 -14.33967 -13.93584 -13.66486 -13.45114 -13.40755 -13.08206 -12.96519 -12.93877 -12.92664 -12.67946 -12.54465 -12.24720 -12.15040 -12.11363 -11.94457 -11.75457 -11.59838 -11.57967 -11.27235 -11.19316 -11.06811 -10.99904 -10.69019 -10.59846 -10.38479 -9.89791 -8.91624 -8.16191 -5.47157 1.30611 1.41189 1.50762 1.72090 2.29979 2.42414 2.75204 3.06359 3.37883 3.64701 3.66155 3.78383 3.86498 3.88018 3.97877 4.05729 4.21117 4.28944 4.37742 4.38460 4.44422 4.49661 4.53537 4.55361 4.59110 4.62601 4.64075 4.65547 4.68150 4.73038 4.76481 4.78881 4.88951 4.93728 4.99344 5.00537 5.06530 5.12949 5.15753 5.16948 5.21555 5.25628 5.26760 5.30502 5.39393 5.40534 5.49740 5.59774 5.73743 5.88035 6.13373 6.18918 6.72534 6.93703 7.40120 7.64454 8.04976 9.03974 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018735 B = 0.002866 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.192239 B = 9768.865654 C =10463.397089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.404 6.404 3 C 0.073 3.927 4 C -0.070 4.070 5 C 0.521 3.479 6 O -0.581 6.581 7 N -0.707 5.707 8 C 0.134 3.866 9 C -0.078 4.078 10 C -0.114 4.114 11 C 0.144 3.856 12 N -0.621 5.621 13 C -0.247 4.247 14 H 0.050 0.950 15 C -0.038 4.038 16 N -0.960 5.960 17 Si 0.949 3.051 18 H -0.276 1.276 19 H -0.312 1.312 20 H -0.258 1.258 21 C 0.121 3.879 22 C -0.120 4.120 23 C -0.097 4.097 24 C -0.124 4.124 25 C -0.115 4.115 26 C -0.133 4.133 27 C -0.089 4.089 28 H 0.039 0.961 29 H 0.059 0.941 30 H 0.093 0.907 31 H 0.046 0.954 32 H 0.088 0.912 33 H 0.415 0.585 34 H 0.061 0.939 35 H 0.048 0.952 36 H 0.085 0.915 37 H 0.043 0.957 38 H 0.086 0.914 39 H 0.039 0.961 40 H 0.053 0.947 41 H 0.261 0.739 42 H 0.036 0.964 43 H 0.046 0.954 44 H 0.080 0.920 45 H 0.051 0.949 46 H 0.073 0.927 47 H 0.096 0.904 48 H 0.078 0.922 49 H 0.035 0.965 50 H 0.079 0.921 51 H 0.058 0.942 52 H 0.066 0.934 53 H 0.059 0.941 54 H 0.096 0.904 55 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.670 21.371 -22.489 31.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.323 6.323 3 C -0.004 4.004 4 C -0.073 4.073 5 C 0.309 3.691 6 O -0.462 6.462 7 N -0.360 5.360 8 C 0.010 3.990 9 C -0.097 4.097 10 C -0.153 4.153 11 C 0.020 3.980 12 N -0.346 5.346 13 C -0.377 4.377 14 H 0.068 0.932 15 C -0.233 4.233 16 N -0.606 5.606 17 Si 0.778 3.222 18 H -0.203 1.203 19 H -0.241 1.241 20 H -0.182 1.182 21 C -0.004 4.004 22 C -0.160 4.160 23 C -0.135 4.135 24 C -0.162 4.162 25 C -0.152 4.152 26 C -0.171 4.171 27 C -0.127 4.127 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.112 0.888 31 H 0.064 0.936 32 H 0.106 0.894 33 H 0.254 0.746 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.103 0.897 37 H 0.062 0.938 38 H 0.105 0.895 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.054 0.946 43 H 0.065 0.935 44 H 0.098 0.902 45 H 0.070 0.930 46 H 0.091 0.909 47 H 0.114 0.886 48 H 0.097 0.903 49 H 0.054 0.946 50 H 0.098 0.902 51 H 0.076 0.924 52 H 0.085 0.915 53 H 0.078 0.922 54 H 0.114 0.886 55 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.261 21.451 -21.828 31.238 hybrid contribution -0.116 -0.977 0.583 1.144 sum 6.145 20.474 -21.245 30.138 Atomic orbital electron populations 1.22874 0.79248 1.03800 1.00704 1.87672 1.21349 1.27780 1.95544 1.22552 0.90453 0.85364 1.02002 1.20971 0.95150 0.97398 0.93786 1.20860 0.79285 0.81589 0.87376 1.90606 1.38184 1.68629 1.48762 1.46103 1.50230 1.14753 1.24905 1.21214 0.98598 0.91518 0.87657 1.21148 0.95556 0.93900 0.99097 1.21901 0.94710 0.97122 1.01537 1.21107 0.96269 0.90367 0.90285 1.44506 1.01150 1.56472 1.32482 1.18875 1.01471 1.03202 1.14114 0.93245 1.25928 1.01402 0.98572 0.97375 1.69979 1.47772 1.25456 1.17419 0.85874 0.79362 0.76796 0.80192 1.20269 1.24137 1.18229 1.21369 0.83725 0.96424 0.98841 1.21887 1.00071 0.95816 0.98197 1.21541 0.95475 1.00781 0.95702 1.21587 0.95539 0.97584 1.01468 1.21527 0.99952 0.95520 0.98228 1.21735 0.95431 1.00788 0.99113 1.21325 0.95670 0.92881 1.02783 0.94274 0.92242 0.88830 0.93584 0.89360 0.74568 0.92114 0.93387 0.89719 0.93843 0.89520 0.94299 0.92863 0.93030 0.94568 0.93549 0.90164 0.93048 0.90863 0.88592 0.90338 0.94599 0.90211 0.92356 0.91512 0.92222 0.88577 0.92612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.40 -6.12 7.52 -148.98 -1.12 -7.24 16 3 C 0.07 1.00 4.79 71.98 0.35 1.34 16 4 C -0.07 -1.15 0.52 -52.93 -0.03 -1.18 16 5 C 0.52 12.72 4.96 87.65 0.43 13.15 16 6 O -0.58 -18.48 13.66 -3.02 -0.04 -18.52 16 7 N -0.71 -16.41 4.81 -463.06 -2.23 -18.64 16 8 C 0.13 3.58 5.06 86.38 0.44 4.02 16 9 C -0.08 -2.18 2.19 -10.76 -0.02 -2.21 16 10 C -0.11 -3.39 5.25 30.67 0.16 -3.23 16 11 C 0.14 5.33 6.52 86.36 0.56 5.90 16 12 N -0.62 -29.08 2.77 -699.11 -1.94 -31.01 16 13 C -0.25 -14.16 10.04 84.03 0.84 -13.32 16 14 H 0.05 3.10 8.06 -2.91 -0.02 3.08 16 15 C -0.04 -2.27 5.23 84.86 0.44 -1.83 16 16 N -0.96 -61.30 13.97 21.65 0.30 -61.00 16 17 Si 0.95 47.01 24.35 68.60 1.67 48.68 16 18 H -0.28 -12.97 6.62 99.48 0.66 -12.31 16 19 H -0.31 -15.76 7.11 99.48 0.71 -15.05 16 20 H -0.26 -12.08 6.64 99.48 0.66 -11.42 16 21 C 0.12 5.09 4.20 86.36 0.36 5.46 16 22 C -0.12 -4.03 5.36 30.67 0.16 -3.87 16 23 C -0.10 -1.30 4.49 30.60 0.14 -1.16 16 24 C -0.12 -1.90 5.70 30.59 0.17 -1.72 16 25 C -0.11 -1.63 5.92 30.59 0.18 -1.45 16 26 C -0.13 -2.39 5.63 30.61 0.17 -2.22 16 27 C -0.09 -1.38 4.38 30.61 0.13 -1.24 16 28 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.41 8.50 5.03 -92.71 -0.47 8.03 16 34 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.09 2.09 7.15 -2.39 -0.02 2.07 16 39 H 0.04 1.32 8.14 -2.38 -0.02 1.31 16 40 H 0.05 2.03 7.93 -2.39 -0.02 2.01 16 41 H 0.26 15.83 8.31 -92.71 -0.77 15.05 16 42 H 0.04 1.45 7.07 -2.39 -0.02 1.43 16 43 H 0.05 2.19 4.50 -2.39 -0.01 2.18 16 44 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 45 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 46 H 0.07 1.03 7.11 -2.39 -0.02 1.02 16 47 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.04 0.74 7.22 -2.38 -0.02 0.72 16 50 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 51 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 52 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 53 H 0.06 1.52 5.51 -2.39 -0.01 1.50 16 54 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 55 H 0.06 1.01 8.10 -2.39 -0.02 1.00 16 Total: -1.00 -72.17 401.22 2.69 -69.49 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 0.29 Total: 20.21 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: 5.75 Total: -1.97 kcal Atomic # 7 Polarization: -106.79 SS G_CDS: -3.86 Total: -110.65 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -1.16 Total: -25.76 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 1.67 Total: 48.68 kcal Total: -72.17 2.69 -69.49 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598688534.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.732 kcal (2) G-P(sol) polarization free energy of solvation -72.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds