Wall clock time and date at job start Tue Mar 31 2020 23:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47159 * 2 1 4 4 C 1.52996 * 109.47066 * 119.99505 * 2 1 3 5 5 H 1.09001 * 109.49442 * 178.90315 * 4 2 1 6 6 C 1.53703 * 109.42284 * 299.13276 * 4 2 1 7 7 N 1.47077 * 108.27709 * 173.94788 * 6 4 2 8 8 C 1.34773 * 120.88163 * 128.75430 * 7 6 4 9 9 O 1.21588 * 119.99981 * 5.08242 * 8 7 6 10 10 N 1.34777 * 120.00178 * 185.08272 * 8 7 6 11 11 C 1.46497 * 120.00530 * 174.49475 * 10 8 7 12 12 C 1.53037 * 109.46315 * 154.99498 * 11 10 8 13 13 C 1.53196 * 109.31293 * 181.37344 * 12 11 10 14 14 N 1.46919 * 108.77483 * 305.36812 * 13 12 11 15 15 C 1.36944 * 120.62937 * 233.58332 * 14 13 12 16 16 H 1.08002 * 119.99544 * 148.39696 * 15 14 13 17 17 C 1.38807 * 120.00140 * 328.39783 * 15 14 13 18 18 N 1.31622 * 120.00123 * 335.59824 * 17 15 14 19 19 Si 1.86800 * 120.00220 * 155.59975 * 17 15 14 20 20 H 1.48505 * 109.46780 * 59.99804 * 19 17 15 21 21 H 1.48492 * 109.47293 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.46880 * 300.00000 * 19 17 15 23 23 C 1.46931 * 118.74076 * 53.86005 * 14 13 12 24 24 C 1.53039 * 109.44937 * 275.06553 * 11 10 8 25 25 C 1.47083 * 118.23613 * 308.47875 * 7 6 4 26 26 C 1.53242 * 108.52143 * 51.46063 * 25 7 6 27 27 N 1.46896 * 109.33864 * 306.17157 * 26 25 7 28 28 C 1.46900 * 110.99872 * 187.24984 * 27 26 25 29 29 H 1.08996 * 109.47343 * 306.21865 * 1 2 3 30 30 H 1.09002 * 109.46706 * 66.21584 * 1 2 3 31 31 H 1.08998 * 109.47552 * 186.21201 * 1 2 3 32 32 H 1.08993 * 109.47545 * 239.99699 * 2 1 3 33 33 H 1.09000 * 109.46612 * 299.99516 * 3 2 1 34 34 H 1.08993 * 109.47137 * 59.99450 * 3 2 1 35 35 H 1.08999 * 109.46978 * 180.02562 * 3 2 1 36 36 H 1.08991 * 109.79651 * 54.28147 * 6 4 2 37 37 H 1.08999 * 109.69482 * 293.54904 * 6 4 2 38 38 H 0.97001 * 120.00116 * 354.49500 * 10 8 7 39 39 H 1.09007 * 109.45434 * 35.02474 * 11 10 8 40 40 H 1.09006 * 109.49519 * 61.42293 * 12 11 10 41 41 H 1.09001 * 109.49981 * 301.32967 * 12 11 10 42 42 H 1.09005 * 109.58725 * 185.57856 * 13 12 11 43 43 H 1.08999 * 109.58565 * 65.15706 * 13 12 11 44 44 H 0.97000 * 119.99306 * 356.85690 * 18 17 15 45 45 H 1.08996 * 109.58426 * 65.92600 * 23 14 13 46 46 H 1.09001 * 109.58721 * 186.35318 * 23 14 13 47 47 H 1.09008 * 109.49196 * 298.56225 * 24 11 10 48 48 H 1.08992 * 109.49886 * 58.63060 * 24 11 10 49 49 H 1.09002 * 109.62752 * 171.17054 * 25 7 6 50 50 H 1.08997 * 109.62901 * 291.55582 * 25 7 6 51 51 H 1.09005 * 109.48933 * 66.12866 * 26 25 7 52 52 H 1.09000 * 109.49253 * 186.20649 * 26 25 7 53 53 H 1.08998 * 109.47233 * 52.98982 * 28 27 26 54 54 H 1.09001 * 109.47262 * 172.98542 * 28 27 26 55 55 H 1.09002 * 109.47471 * 292.98713 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 3.1298 -0.7384 1.2399 6 6 1.5450 0.0170 2.5033 7 7 1.9237 -0.7743 3.6839 8 6 2.5778 -0.2065 4.7164 9 8 2.7811 0.9923 4.7220 10 7 3.0067 -0.9674 5.7428 11 6 3.8214 -0.3728 6.8052 12 6 3.6594 -1.1891 8.0895 13 6 4.4856 -0.5447 9.2071 14 7 5.8752 -0.4088 8.7497 15 6 6.9074 -0.9146 9.4940 16 1 7.7976 -1.2807 9.0041 17 6 6.8095 -0.9569 10.8779 18 7 6.0086 -0.1230 11.5069 19 14 7.8145 -2.1974 11.8479 20 1 9.2600 -1.9675 11.5973 21 1 7.5324 -2.0381 13.2971 22 1 7.4503 -3.5720 11.4204 23 6 6.1368 0.2856 7.4815 24 6 5.2917 -0.3729 6.3805 25 6 1.5643 -2.2003 3.7104 26 6 2.0532 -2.8498 2.4114 27 7 1.5280 -2.0980 1.2639 28 6 1.8302 -2.7853 0.0013 29 1 -0.3634 0.6072 0.8290 30 1 -0.3633 0.4145 -0.9404 31 1 -0.3634 -1.0216 0.1112 32 1 1.8934 -0.5138 -0.8899 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 3.1300 1.4425 -0.0005 36 1 0.4609 0.1226 2.4657 37 1 2.0100 1.0013 2.5578 38 1 2.7760 -1.9089 5.7781 39 1 3.4948 0.6520 6.9827 40 1 4.0089 -2.2076 7.9197 41 1 2.6086 -1.2081 8.3785 42 1 4.4534 -1.1755 10.0955 43 1 4.0798 0.4396 9.4404 44 1 5.5216 0.5511 11.0076 45 1 5.8628 1.3363 7.5770 46 1 7.1944 0.2029 7.2310 47 1 5.6258 -1.3991 6.2269 48 1 5.4025 0.1886 5.4530 49 1 2.0419 -2.6825 4.5633 50 1 0.4821 -2.3036 3.7901 51 1 3.1429 -2.8374 2.3863 52 1 1.6996 -3.8797 2.3642 53 1 1.4828 -3.8170 0.0570 54 1 1.3255 -2.2759 -0.8196 55 1 2.9065 -2.7732 -0.1705 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601570426.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:19 Heat of formation + Delta-G solvation = -19.890979 kcal Electronic energy + Delta-G solvation = -31361.270474 eV Core-core repulsion = 27432.883002 eV Total energy + Delta-G solvation = -3928.387472 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.76413 -40.22907 -39.10147 -36.53640 -36.23933 -35.28659 -33.94153 -31.97675 -31.20151 -30.80107 -29.24511 -27.97565 -26.80947 -25.39979 -25.26765 -24.08088 -23.66976 -22.75192 -21.28000 -20.88194 -19.86393 -19.58608 -19.00094 -17.72412 -16.75551 -16.58191 -16.38834 -16.22827 -16.11808 -15.84065 -15.67600 -15.39036 -15.27809 -15.11282 -14.85484 -14.72696 -14.32972 -14.27078 -13.98734 -13.68514 -13.49953 -13.38728 -13.00627 -12.89517 -12.83964 -12.70292 -12.59120 -12.52945 -12.39374 -12.13190 -12.08790 -11.96230 -11.88777 -11.81388 -11.61271 -11.56685 -11.48131 -11.31348 -11.15776 -10.47289 -10.24086 -9.67437 -9.26663 -8.94151 -8.28601 -5.46220 1.50662 1.59784 1.67200 1.86442 2.05120 2.65268 2.81641 2.83888 3.21859 3.49261 3.66694 3.74160 3.77307 3.90630 3.95552 4.06712 4.09197 4.20502 4.22281 4.28299 4.29214 4.37550 4.46810 4.51708 4.61156 4.61992 4.62863 4.68683 4.70855 4.76650 4.80486 4.83324 4.87158 4.92690 4.97882 5.01724 5.03613 5.06440 5.10468 5.12911 5.16103 5.22468 5.34923 5.38441 5.45035 5.50363 5.54702 5.81365 5.86059 6.00642 6.07782 6.37883 6.89943 7.03766 7.48601 7.74904 8.21056 8.97818 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.024493 B = 0.002305 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.911060 B =12142.774262 C =12502.863248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.084 4.084 3 C -0.152 4.152 4 C 0.084 3.916 5 H 0.024 0.976 6 C 0.138 3.862 7 N -0.631 5.631 8 C 0.702 3.298 9 O -0.635 6.635 10 N -0.727 5.727 11 C 0.181 3.819 12 C -0.122 4.122 13 C 0.161 3.839 14 N -0.615 5.615 15 C -0.360 4.360 16 H 0.049 0.951 17 C -0.073 4.073 18 N -0.940 5.940 19 Si 1.119 2.881 20 H -0.277 1.277 21 H -0.292 1.292 22 H -0.275 1.275 23 C 0.147 3.853 24 C -0.121 4.121 25 C 0.111 3.889 26 C 0.043 3.957 27 N -0.534 5.534 28 C 0.022 3.978 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.050 0.950 35 H 0.046 0.954 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.407 0.593 39 H 0.057 0.943 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.053 0.947 43 H 0.003 0.997 44 H 0.253 0.747 45 H 0.007 0.993 46 H 0.053 0.947 47 H 0.064 0.936 48 H 0.054 0.946 49 H 0.093 0.907 50 H 0.090 0.910 51 H 0.026 0.974 52 H 0.114 0.886 53 H 0.082 0.918 54 H 0.082 0.918 55 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.714 -8.287 -26.095 30.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.103 4.103 3 C -0.210 4.210 4 C -0.026 4.026 5 H 0.042 0.958 6 C 0.015 3.985 7 N -0.368 5.368 8 C 0.404 3.596 9 O -0.517 6.517 10 N -0.383 5.383 11 C 0.075 3.925 12 C -0.162 4.162 13 C 0.034 3.966 14 N -0.340 5.340 15 C -0.490 4.490 16 H 0.067 0.933 17 C -0.269 4.269 18 N -0.581 5.581 19 Si 0.943 3.057 20 H -0.203 1.203 21 H -0.218 1.218 22 H -0.200 1.200 23 C 0.021 3.979 24 C -0.161 4.161 25 C -0.011 4.011 26 C -0.086 4.086 27 N -0.259 5.259 28 C -0.126 4.126 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.246 0.754 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.071 0.929 43 H 0.021 0.979 44 H 0.063 0.937 45 H 0.025 0.975 46 H 0.072 0.928 47 H 0.083 0.917 48 H 0.073 0.927 49 H 0.111 0.889 50 H 0.109 0.891 51 H 0.044 0.956 52 H 0.132 0.868 53 H 0.101 0.899 54 H 0.101 0.899 55 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -13.729 -8.005 -24.522 29.221 hybrid contribution 0.841 0.785 -1.278 1.720 sum -12.888 -7.220 -25.800 29.730 Atomic orbital electron populations 1.21768 0.93472 1.02755 1.01461 1.21152 0.97523 0.95566 0.96027 1.21911 1.00640 0.95971 1.02444 1.22043 0.95802 0.89464 0.95260 0.95808 1.21815 1.00510 0.94277 0.81866 1.47430 1.60052 1.11531 1.17765 1.16054 0.78294 0.84692 0.80579 1.90877 1.64995 1.15054 1.80725 1.45258 1.56225 1.13216 1.23636 1.20467 0.89407 0.96801 0.85791 1.22152 1.00409 0.99642 0.93976 1.20757 0.83825 0.96423 0.95566 1.44375 1.02012 1.65180 1.22413 1.20170 0.99443 1.38568 0.90781 0.93320 1.27370 1.02238 1.01688 0.95633 1.70923 1.31847 1.17172 1.38152 0.82805 0.74570 0.74053 0.74279 1.20335 1.21802 1.20045 1.21030 0.97657 0.93116 0.86097 1.22229 0.95266 1.00979 0.97646 1.21970 1.01969 0.78855 0.98314 1.22527 0.97190 0.98921 0.89932 1.61986 1.59015 1.01342 1.03511 1.22493 0.98852 0.99936 0.91317 0.93331 0.92154 0.91225 0.89796 0.90950 0.93122 0.93495 0.90021 0.90858 0.75443 0.92509 0.90831 0.90018 0.92896 0.97943 0.93679 0.97486 0.92818 0.91679 0.92736 0.88941 0.89140 0.95588 0.86811 0.89894 0.89918 0.96260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 8.41 71.98 0.61 -0.98 16 2 C -0.08 -1.09 2.20 -10.79 -0.02 -1.12 16 3 C -0.15 -2.19 8.83 71.98 0.64 -1.56 16 4 C 0.08 1.42 1.85 45.15 0.08 1.50 16 5 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 6 C 0.14 2.97 5.10 86.51 0.44 3.41 16 7 N -0.63 -14.55 3.00 -835.04 -2.51 -17.06 16 8 C 0.70 21.83 8.27 179.06 1.48 23.31 16 9 O -0.64 -25.68 15.45 -3.99 -0.06 -25.74 16 10 N -0.73 -20.40 4.99 -457.69 -2.28 -22.69 16 11 C 0.18 6.35 2.46 45.02 0.11 6.46 16 12 C -0.12 -4.32 5.55 30.67 0.17 -4.15 16 13 C 0.16 7.57 4.71 86.37 0.41 7.98 16 14 N -0.61 -31.54 2.79 -698.25 -1.95 -33.49 16 15 C -0.36 -20.33 9.45 84.03 0.79 -19.53 16 16 H 0.05 2.75 7.94 -2.91 -0.02 2.73 16 17 C -0.07 -4.13 4.67 84.86 0.40 -3.74 16 18 N -0.94 -57.68 12.63 21.65 0.27 -57.41 16 19 Si 1.12 50.53 29.98 68.60 2.06 52.59 16 20 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 21 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 22 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 23 C 0.15 6.63 6.54 86.51 0.57 7.20 16 24 C -0.12 -4.52 5.67 30.82 0.17 -4.35 16 25 C 0.11 1.67 6.59 86.35 0.57 2.23 16 26 C 0.04 0.55 5.62 86.39 0.49 1.04 16 27 N -0.53 -7.18 3.85 -895.16 -3.45 -10.63 16 28 C 0.02 0.21 8.74 127.69 1.12 1.33 16 29 H 0.05 0.64 6.66 -2.39 -0.02 0.63 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.07 0.82 6.97 -2.39 -0.02 0.81 16 32 H 0.08 0.94 6.45 -2.39 -0.02 0.93 16 33 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.05 0.85 6.56 -2.39 -0.02 0.83 16 35 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.08 1.61 6.34 -2.39 -0.02 1.60 16 37 H 0.07 1.94 5.76 -2.39 -0.01 1.93 16 38 H 0.41 8.69 6.10 -92.71 -0.57 8.13 16 39 H 0.06 2.33 7.50 -2.38 -0.02 2.32 16 40 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 41 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 42 H 0.05 2.76 6.58 -2.38 -0.02 2.74 16 43 H 0.00 0.13 7.83 -2.39 -0.02 0.11 16 44 H 0.25 15.97 6.70 -92.71 -0.62 15.35 16 45 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 46 H 0.05 2.41 7.93 -2.39 -0.02 2.39 16 47 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 48 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 49 H 0.09 1.16 5.63 -2.39 -0.01 1.14 16 50 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 51 H 0.03 0.42 8.14 -2.38 -0.02 0.40 16 52 H 0.11 0.92 8.03 -2.39 -0.02 0.90 16 53 H 0.08 0.61 8.03 -2.39 -0.02 0.59 16 54 H 0.08 0.70 5.99 -2.39 -0.01 0.69 16 55 H 0.02 0.22 8.14 -2.39 -0.02 0.20 16 Total: -1.00 -72.72 403.40 0.54 -72.18 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: 0.45 Total: 23.21 kcal Atomic # 6 Polarization: 11.03 SS G_CDS: 8.01 Total: 19.04 kcal Atomic # 7 Polarization: -131.36 SS G_CDS: -9.92 Total: -141.28 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -0.06 Total: -25.74 kcal Atomic # 14 Polarization: 50.53 SS G_CDS: 2.06 Total: 52.59 kcal Total: -72.72 0.54 -72.18 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601570426.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.292 kcal (2) G-P(sol) polarization free energy of solvation -72.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds