Wall clock time and date at job start Tue Mar 31 2020 23:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00093 * 2 1 4 4 H 1.48503 * 109.47145 * 239.99311 * 3 2 1 5 5 H 1.48502 * 109.47100 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47188 * 119.99472 * 3 2 1 7 7 C 1.38806 * 119.99504 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99526 * 163.08272 * 7 2 1 9 9 N 1.36939 * 120.00672 * 343.08992 * 7 2 1 10 10 C 1.46928 * 120.62375 * 331.84102 * 9 7 2 11 11 C 1.53195 * 108.77247 * 233.58847 * 10 9 7 12 12 C 1.53039 * 109.31502 * 305.36647 * 11 10 9 13 13 N 1.46498 * 109.46197 * 181.38804 * 12 11 10 14 14 C 1.34780 * 120.00068 * 154.97361 * 13 12 11 15 15 O 1.21590 * 120.00010 * 359.97438 * 14 13 12 16 16 N 1.34771 * 120.00013 * 180.02562 * 14 13 12 17 17 C 1.46505 * 119.99888 * 179.97438 * 16 14 13 18 18 C 1.53007 * 109.47107 * 179.97438 * 17 16 14 19 19 C 1.52999 * 109.46873 * 180.02562 * 18 17 16 20 20 N 1.46903 * 109.46631 * 180.02562 * 19 18 17 21 21 C 1.46849 * 110.99647 * 169.99655 * 20 19 18 22 22 C 1.53034 * 109.52175 * 185.83821 * 21 20 19 23 23 C 1.53123 * 109.28402 * 300.82504 * 22 21 20 24 24 C 1.53123 * 109.15887 * 57.65077 * 23 22 21 25 25 C 1.46844 * 111.00122 * 294.20845 * 20 19 18 26 26 C 1.53038 * 109.52537 * 61.37094 * 12 11 10 27 27 C 1.46925 * 120.63382 * 151.82406 * 9 7 2 28 28 H 0.97008 * 119.99749 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.58825 * 113.80679 * 10 9 7 30 30 H 1.08997 * 109.70595 * 353.44128 * 10 9 7 31 31 H 1.09008 * 109.49439 * 185.41510 * 11 10 9 32 32 H 1.08997 * 109.50054 * 65.32000 * 11 10 9 33 33 H 1.09005 * 109.45646 * 301.35956 * 12 11 10 34 34 H 0.96993 * 119.99954 * 334.97235 * 13 12 11 35 35 H 0.97000 * 120.00134 * 359.97438 * 16 14 13 36 36 H 1.09007 * 109.47073 * 59.99733 * 17 16 14 37 37 H 1.08997 * 109.47242 * 299.99527 * 17 16 14 38 38 H 1.08998 * 109.46839 * 59.99968 * 18 17 16 39 39 H 1.08997 * 109.46978 * 300.00050 * 18 17 16 40 40 H 1.08993 * 109.47058 * 60.00189 * 19 18 17 41 41 H 1.08997 * 109.47255 * 299.99753 * 19 18 17 42 42 H 1.09004 * 109.45715 * 65.82933 * 21 20 19 43 43 H 1.09000 * 109.46642 * 305.85570 * 21 20 19 44 44 H 1.08996 * 109.50652 * 180.88248 * 22 21 20 45 45 H 1.09002 * 109.50790 * 60.76534 * 22 21 20 46 46 H 1.08998 * 109.52803 * 177.55953 * 23 22 21 47 47 H 1.09007 * 109.51969 * 297.75061 * 23 22 21 48 48 H 1.08993 * 109.50074 * 62.28892 * 24 23 22 49 49 H 1.08998 * 109.50423 * 182.40688 * 24 23 22 50 50 H 1.08997 * 109.46200 * 294.17567 * 25 20 19 51 51 H 1.09004 * 109.46372 * 54.14839 * 25 20 19 52 52 H 1.08999 * 109.49754 * 58.58584 * 26 12 11 53 53 H 1.09009 * 109.49587 * 178.68052 * 26 12 11 54 54 H 1.09005 * 109.58021 * 246.19558 * 27 9 7 55 55 H 1.08991 * 109.58547 * 6.47621 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0101 -1.2022 0.0005 8 1 3.0551 -1.2225 -0.2716 9 7 1.3699 -2.3623 0.3460 10 6 0.2257 -2.3399 1.2675 11 6 0.4969 -3.3191 2.4140 12 6 0.8115 -4.7008 1.8359 13 7 1.0389 -5.6476 2.9305 14 6 0.8349 -6.9655 2.7348 15 8 0.4618 -7.3684 1.6500 16 7 1.0436 -7.8364 3.7419 17 6 0.8214 -9.2688 3.5294 18 6 1.1289 -10.0298 4.8207 19 6 0.8974 -11.5257 4.5985 20 7 1.1920 -12.2562 5.8385 21 6 0.7585 -13.6558 5.7404 22 6 0.9467 -14.3455 7.0935 23 6 2.4225 -14.2758 7.4957 24 6 2.8616 -12.8096 7.5434 25 6 2.6179 -12.1645 6.1772 26 6 2.0671 -4.6171 0.9650 27 6 1.8137 -3.6529 -0.1981 28 1 -0.4850 0.8401 -0.0004 29 1 -0.6773 -2.6405 0.7363 30 1 0.0964 -1.3347 1.6685 31 1 -0.3838 -3.3840 3.0530 32 1 1.3466 -2.9677 2.9994 33 1 -0.0286 -5.0408 1.2303 34 1 1.3362 -5.3261 3.7959 35 1 1.3409 -7.5149 4.6074 36 1 1.4765 -9.6241 2.7339 37 1 -0.2177 -9.4373 3.2467 38 1 0.4740 -9.6746 5.6164 39 1 2.1681 -9.8613 5.1030 40 1 1.5525 -11.8805 3.8030 41 1 -0.1417 -11.6946 4.3160 42 1 1.3546 -14.1685 4.9855 43 1 -0.2937 -13.6912 5.4580 44 1 0.6395 -15.3884 7.0163 45 1 0.3403 -13.8418 7.8463 46 1 2.5540 -14.7276 8.4789 47 1 3.0254 -14.8129 6.7634 48 1 2.2853 -12.2817 8.3031 49 1 3.9225 -12.7552 7.7875 50 1 3.2052 -12.6842 5.4202 51 1 2.9163 -11.1166 6.2121 52 1 2.9019 -4.2533 1.5642 53 1 2.3042 -5.6060 0.5725 54 1 1.0401 -4.0605 -0.8489 55 1 2.7331 -3.5130 -0.7665 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609339580.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:43 Heat of formation + Delta-G solvation = -46.168201 kcal Electronic energy + Delta-G solvation = -29186.205124 eV Core-core repulsion = 25256.678186 eV Total energy + Delta-G solvation = -3929.526938 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.18096 -39.99767 -39.12042 -36.82474 -35.89432 -34.81013 -33.85813 -32.11954 -31.75637 -31.50591 -30.70308 -27.21831 -26.36309 -24.44275 -23.97963 -23.82989 -23.36958 -22.16244 -21.62383 -21.02163 -20.59462 -19.31177 -18.57080 -17.63535 -16.97942 -16.91288 -16.69920 -16.10766 -15.86732 -15.63389 -15.45954 -15.34158 -15.22696 -15.12649 -14.91448 -14.74257 -14.38003 -14.27641 -14.06220 -13.95857 -13.41839 -13.20907 -13.06924 -12.98065 -12.62769 -12.56159 -12.53391 -12.45481 -12.22693 -12.10173 -12.02342 -11.88878 -11.84836 -11.57364 -11.54596 -11.39054 -11.26486 -11.21826 -11.09379 -10.54021 -10.29336 -9.70969 -9.28422 -8.69678 -7.86592 -5.32462 1.49916 1.51477 1.58920 1.71969 2.19902 2.53254 2.88911 3.27580 3.37276 3.67998 3.86520 3.89383 3.91979 3.99735 4.06853 4.09417 4.15554 4.19184 4.35728 4.36330 4.47500 4.48055 4.54074 4.59921 4.66445 4.68850 4.71846 4.74908 4.82859 4.84474 4.87766 4.94762 5.02742 5.06179 5.07882 5.09189 5.17319 5.18869 5.22174 5.25112 5.30701 5.31466 5.47914 5.49206 5.53685 5.62610 5.65589 5.71579 6.07556 6.13557 6.17059 6.39995 7.15557 7.16898 7.64282 7.85001 8.38356 9.20398 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.036533 B = 0.001492 C = 0.001475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.247427 B =18760.215557 C =18978.329484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.048 4.048 3 Si 0.970 3.030 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.275 1.275 7 C -0.266 4.266 8 H 0.067 0.933 9 N -0.608 5.608 10 C 0.179 3.821 11 C -0.127 4.127 12 C 0.181 3.819 13 N -0.726 5.726 14 C 0.698 3.302 15 O -0.639 6.639 16 N -0.732 5.732 17 C 0.143 3.857 18 C -0.110 4.110 19 C 0.059 3.941 20 N -0.544 5.544 21 C 0.052 3.948 22 C -0.115 4.115 23 C -0.123 4.123 24 C -0.116 4.116 25 C 0.049 3.951 26 C -0.123 4.123 27 C 0.144 3.856 28 H 0.251 0.749 29 H -0.006 1.006 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.410 0.590 35 H 0.412 0.588 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.034 0.966 41 H 0.079 0.921 42 H 0.029 0.971 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.066 0.934 46 H 0.070 0.930 47 H 0.056 0.944 48 H 0.066 0.934 49 H 0.074 0.926 50 H 0.027 0.973 51 H 0.082 0.918 52 H 0.066 0.934 53 H 0.056 0.944 54 H 0.006 0.994 55 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.647 -27.860 19.322 34.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.244 4.244 3 Si 0.798 3.202 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.201 1.201 7 C -0.396 4.396 8 H 0.085 0.915 9 N -0.332 5.332 10 C 0.052 3.948 11 C -0.167 4.167 12 C 0.075 3.925 13 N -0.381 5.381 14 C 0.398 3.602 15 O -0.521 6.521 16 N -0.389 5.389 17 C 0.018 3.982 18 C -0.148 4.148 19 C -0.069 4.069 20 N -0.269 5.269 21 C -0.075 4.075 22 C -0.153 4.153 23 C -0.160 4.160 24 C -0.154 4.154 25 C -0.079 4.079 26 C -0.163 4.163 27 C 0.018 3.982 28 H 0.060 0.940 29 H 0.012 0.988 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.246 0.754 35 H 0.249 0.751 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.052 0.948 41 H 0.098 0.902 42 H 0.047 0.953 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.084 0.916 46 H 0.089 0.911 47 H 0.075 0.925 48 H 0.085 0.915 49 H 0.092 0.908 50 H 0.045 0.955 51 H 0.100 0.900 52 H 0.085 0.915 53 H 0.075 0.925 54 H 0.024 0.976 55 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.943 -27.898 18.712 33.823 hybrid contribution 0.746 0.906 -0.531 1.288 sum 4.689 -26.992 18.181 32.880 Atomic orbital electron populations 1.70186 1.06704 1.26017 1.55199 1.25817 0.96033 1.01524 1.01002 0.85311 0.77522 0.79033 0.78365 1.20345 1.22045 1.20105 1.19499 0.92899 0.85889 1.41359 0.91502 1.44331 1.35930 1.02139 1.50763 1.20565 0.87699 0.97746 0.88754 1.22255 1.01960 0.93556 0.98912 1.20478 0.96868 0.87771 0.87344 1.45118 1.72652 1.04323 1.16010 1.16183 0.78248 0.81648 0.84164 1.90898 1.55624 1.78813 1.26742 1.44932 1.73321 1.06720 1.13927 1.21096 1.00737 0.78207 0.98193 1.21628 1.03252 0.93871 0.96074 1.21949 1.01604 0.93087 0.90280 1.61928 1.18298 1.13158 1.33536 1.22136 1.00554 0.87439 0.97405 1.21575 0.96924 1.00324 0.96450 1.21599 0.96115 0.96562 1.01768 1.21584 1.01434 0.95790 0.96575 1.22212 0.87460 1.01362 0.96842 1.22177 0.97947 0.98430 0.97768 1.20966 0.97319 0.86008 0.93904 0.94013 0.98820 0.91779 0.90518 0.91042 0.92803 0.75374 0.75148 0.93005 0.92734 0.89831 0.90341 0.94796 0.90242 0.95264 0.90477 0.90639 0.91552 0.91088 0.92474 0.91495 0.90758 0.95464 0.90016 0.91514 0.92505 0.97616 0.92415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.35 11.19 21.65 0.24 -55.11 16 2 C -0.05 -2.69 4.92 84.86 0.42 -2.27 16 3 Si 0.97 44.56 29.59 68.60 2.03 46.59 16 4 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 5 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 6 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.27 -14.73 9.58 84.03 0.81 -13.93 16 8 H 0.07 3.59 7.89 -2.91 -0.02 3.57 16 9 N -0.61 -31.06 2.99 -699.11 -2.09 -33.15 16 10 C 0.18 8.62 5.30 86.36 0.46 9.07 16 11 C -0.13 -4.56 5.55 30.67 0.17 -4.39 16 12 C 0.18 6.31 2.42 45.02 0.11 6.42 16 13 N -0.73 -19.43 5.08 -457.69 -2.33 -21.76 16 14 C 0.70 20.33 8.53 179.06 1.53 21.85 16 15 O -0.64 -25.15 16.01 -4.00 -0.06 -25.21 16 16 N -0.73 -14.14 5.56 -478.51 -2.66 -16.80 16 17 C 0.14 2.52 5.67 86.38 0.49 3.01 16 18 C -0.11 -1.26 5.26 30.60 0.16 -1.10 16 19 C 0.06 0.72 4.96 86.30 0.43 1.15 16 20 N -0.54 -6.70 4.66 -896.36 -4.17 -10.87 16 21 C 0.05 0.58 5.46 86.32 0.47 1.05 16 22 C -0.11 -1.07 6.09 30.65 0.19 -0.88 16 23 C -0.12 -1.08 6.00 30.68 0.18 -0.89 16 24 C -0.12 -1.09 6.09 30.65 0.19 -0.90 16 25 C 0.05 0.54 5.29 86.33 0.46 1.00 16 26 C -0.12 -4.52 5.65 30.67 0.17 -4.34 16 27 C 0.14 6.40 6.52 86.36 0.56 6.96 16 28 H 0.25 14.37 8.31 -92.70 -0.77 13.60 16 29 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 30 H 0.06 3.44 6.07 -2.39 -0.01 3.42 16 31 H 0.08 2.41 8.14 -2.38 -0.02 2.40 16 32 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.05 2.21 7.58 -2.38 -0.02 2.20 16 34 H 0.41 7.98 8.62 -92.71 -0.80 7.18 16 35 H 0.41 5.10 8.49 -92.71 -0.79 4.31 16 36 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.08 0.79 6.43 -2.39 -0.02 0.77 16 40 H 0.03 0.44 8.12 -2.39 -0.02 0.42 16 41 H 0.08 0.96 7.99 -2.39 -0.02 0.94 16 42 H 0.03 0.34 8.14 -2.39 -0.02 0.32 16 43 H 0.08 0.81 8.01 -2.39 -0.02 0.79 16 44 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 47 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 48 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 50 H 0.03 0.33 8.14 -2.39 -0.02 0.31 16 51 H 0.08 0.83 6.21 -2.38 -0.01 0.81 16 52 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 53 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 54 H 0.01 0.27 8.14 -2.38 -0.02 0.25 16 55 H 0.06 2.48 7.93 -2.39 -0.02 2.46 16 Total: -1.00 -70.87 419.74 -2.99 -73.86 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: -0.73 Total: 20.65 kcal Atomic # 6 Polarization: 15.02 SS G_CDS: 6.79 Total: 21.81 kcal Atomic # 7 Polarization: -126.68 SS G_CDS: -11.01 Total: -137.69 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.06 Total: -25.21 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -70.87 -2.99 -73.86 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609339580.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.688 kcal (2) G-P(sol) polarization free energy of solvation -70.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds