Wall clock time and date at job start Tue Mar 31 2020 23:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53112 * 109.52396 * 2 1 4 4 C 1.53037 * 109.28145 * 182.37614 * 3 2 1 5 5 N 1.46848 * 109.52087 * 59.17701 * 4 3 2 6 6 C 1.46901 * 110.99985 * 174.16039 * 5 4 3 7 7 C 1.52992 * 109.47122 * 169.99976 * 6 5 4 8 8 N 1.46508 * 109.47144 * 180.02562 * 7 6 5 9 9 C 1.34780 * 119.99919 * 179.97438 * 8 7 6 10 10 O 1.21590 * 119.99903 * 0.02562 * 9 8 7 11 11 N 1.34771 * 119.99919 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00450 * 180.02562 * 11 9 8 13 13 C 1.53352 * 109.40649 * 275.12229 * 12 11 9 14 14 C 1.53190 * 109.15070 * 178.68036 * 13 12 11 15 15 N 1.46925 * 108.89356 * 54.57285 * 14 13 12 16 16 C 1.36935 * 120.62758 * 126.30089 * 15 14 13 17 17 H 1.08001 * 120.00088 * 332.62829 * 16 15 14 18 18 C 1.38817 * 119.99782 * 152.62208 * 16 15 14 19 19 N 1.31618 * 119.99923 * 159.36242 * 18 16 15 20 20 Si 1.86801 * 120.00195 * 339.36341 * 18 16 15 21 21 H 1.48501 * 109.47054 * 92.89675 * 20 18 16 22 22 H 1.48497 * 109.47324 * 212.90179 * 20 18 16 23 23 H 1.48501 * 109.46722 * 332.89954 * 20 18 16 24 24 C 1.46926 * 118.73822 * 306.31916 * 15 14 13 25 25 C 1.53037 * 109.46373 * 154.99584 * 12 11 9 26 26 C 1.46838 * 111.19983 * 298.25981 * 5 4 3 27 27 C 1.53042 * 109.52437 * 61.74209 * 26 5 4 28 28 H 1.09001 * 109.46982 * 60.00198 * 1 2 3 29 29 H 1.09005 * 109.46922 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47210 * 300.00140 * 1 2 3 31 31 H 1.08998 * 109.52331 * 120.12485 * 2 1 3 32 32 H 1.09004 * 109.50868 * 62.43473 * 3 2 1 33 33 H 1.08997 * 109.53747 * 302.33863 * 3 2 1 34 34 H 1.08999 * 109.46019 * 299.16370 * 4 3 2 35 35 H 1.08997 * 109.45621 * 179.18882 * 4 3 2 36 36 H 1.09004 * 109.46866 * 50.00437 * 6 5 4 37 37 H 1.08999 * 109.47571 * 290.00383 * 6 5 4 38 38 H 1.08997 * 109.47215 * 60.00265 * 7 6 5 39 39 H 1.09003 * 109.47676 * 300.00020 * 7 6 5 40 40 H 0.96995 * 119.99635 * 0.02562 * 8 7 6 41 41 H 0.97009 * 119.99857 * 359.97438 * 11 9 8 42 42 H 1.09008 * 109.45552 * 35.02254 * 12 11 9 43 43 H 1.09004 * 109.68561 * 58.70788 * 13 12 11 44 44 H 1.09004 * 109.47287 * 298.51449 * 13 12 11 45 45 H 1.09004 * 109.58215 * 294.71811 * 14 13 12 46 46 H 1.08997 * 109.58828 * 174.43980 * 14 13 12 47 47 H 0.96999 * 119.99917 * 180.02562 * 19 18 16 48 48 H 1.09002 * 109.58248 * 173.39705 * 24 15 14 49 49 H 1.08994 * 109.58922 * 293.68210 * 24 15 14 50 50 H 1.09003 * 109.49698 * 61.42482 * 25 12 11 51 51 H 1.08994 * 109.52761 * 301.33896 * 25 12 11 52 52 H 1.09003 * 109.46718 * 181.76099 * 26 5 4 53 53 H 1.09001 * 109.46410 * 301.72587 * 26 5 4 54 54 H 1.09000 * 109.50381 * 180.87906 * 27 26 5 55 55 H 1.09002 * 109.50158 * 60.76105 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0417 1.4431 0.0000 4 6 3.5709 1.4370 -0.0599 5 7 4.0116 0.7424 -1.2764 6 6 5.4686 0.8373 -1.4382 7 6 5.9185 -0.0962 -2.5637 8 7 7.3717 -0.0021 -2.7247 9 6 7.9949 -0.7411 -3.6639 10 8 7.3511 -1.4856 -4.3777 11 7 9.3317 -0.6549 -3.8116 12 6 10.0092 -1.4578 -4.8327 13 6 10.3055 -2.8532 -4.2701 14 6 10.9839 -3.6981 -5.3529 15 7 12.1677 -2.9800 -5.8446 16 6 13.3960 -3.5852 -5.8561 17 1 13.6197 -4.3664 -5.1447 18 6 14.3534 -3.1947 -6.7823 19 7 15.6253 -3.4523 -6.5624 20 14 13.8369 -2.3037 -8.3407 21 1 13.9026 -0.8370 -8.1172 22 1 14.7505 -2.6768 -9.4503 23 1 12.4467 -2.6888 -8.6933 24 6 12.0085 -1.6000 -6.3233 25 6 11.3199 -0.7756 -5.2311 26 6 3.5722 -0.6587 -1.2765 27 6 2.0430 -0.7151 -1.2529 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8943 -0.5156 0.8886 32 1 1.7153 1.9451 0.9108 33 1 1.6457 1.9703 -0.8679 34 1 3.9666 0.9224 0.8157 35 1 3.9378 2.4633 -0.0746 36 1 5.9571 0.5468 -0.5081 37 1 5.7406 1.8632 -1.6865 38 1 5.4300 0.1942 -3.4938 39 1 5.6466 -1.1222 -2.3155 40 1 7.8853 0.5915 -2.1549 41 1 9.8453 -0.0607 -3.2423 42 1 9.3664 -1.5489 -5.7085 43 1 9.3746 -3.3315 -3.9653 44 1 10.9684 -2.7647 -3.4093 45 1 10.2889 -3.8635 -6.1762 46 1 11.2867 -4.6569 -4.9322 47 1 16.2944 -3.1792 -7.2093 48 1 12.9878 -1.1734 -6.5404 49 1 11.3992 -1.5947 -7.2270 50 1 11.9731 -0.7065 -4.3612 51 1 11.1097 0.2250 -5.6087 52 1 3.9401 -1.1546 -2.1747 53 1 3.9679 -1.1635 -0.3952 54 1 1.7175 -1.7553 -1.2373 55 1 1.6469 -0.2225 -2.1410 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609341733.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:58 Heat of formation + Delta-G solvation = -37.364065 kcal Electronic energy + Delta-G solvation = -29656.061277 eV Core-core repulsion = 25726.916115 eV Total energy + Delta-G solvation = -3929.145162 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.26320 -40.24463 -39.29474 -36.84486 -35.96468 -34.97208 -33.99734 -32.05277 -31.95284 -31.69587 -30.26276 -27.80102 -26.55938 -24.68134 -24.50900 -23.74851 -23.26524 -22.03206 -21.89968 -21.19467 -20.57466 -19.47184 -18.65527 -17.75535 -17.21093 -16.82192 -16.64832 -15.99272 -15.96665 -15.77325 -15.58596 -15.39740 -15.33146 -15.10600 -14.92011 -14.74668 -14.60163 -14.43702 -14.21062 -13.80504 -13.64814 -13.44266 -13.34277 -12.98204 -12.79455 -12.58657 -12.55286 -12.46619 -12.27706 -12.26264 -12.10571 -12.01764 -11.77368 -11.55421 -11.54269 -11.41520 -11.29257 -11.16475 -11.08334 -10.70748 -10.32202 -9.75148 -9.31148 -8.96143 -8.15563 -5.47823 1.30270 1.43905 1.52560 1.63436 2.17188 2.42322 2.87375 3.06535 3.30425 3.42932 3.71909 3.79323 3.87324 3.88656 3.92961 3.99612 4.09952 4.24474 4.32081 4.33236 4.42209 4.44654 4.49399 4.50567 4.59295 4.63959 4.69553 4.72271 4.81486 4.83639 4.85745 4.90630 4.92580 4.94116 4.97518 5.03821 5.04222 5.07981 5.14691 5.17397 5.22329 5.29604 5.34984 5.40549 5.46918 5.55420 5.57481 5.87316 6.01922 6.06439 6.11907 6.13559 6.91295 7.12925 7.60963 7.61958 8.02686 9.04192 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.036890 B = 0.001672 C = 0.001653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.835471 B =16744.220919 C =16933.830643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 C -0.109 4.109 4 C 0.056 3.944 5 N -0.542 5.542 6 C 0.055 3.945 7 C 0.141 3.859 8 N -0.732 5.732 9 C 0.701 3.299 10 O -0.635 6.635 11 N -0.726 5.726 12 C 0.179 3.821 13 C -0.127 4.127 14 C 0.146 3.854 15 N -0.618 5.618 16 C -0.250 4.250 17 H 0.053 0.947 18 C -0.032 4.032 19 N -0.955 5.955 20 Si 0.944 3.056 21 H -0.268 1.268 22 H -0.311 1.311 23 H -0.266 1.266 24 C 0.121 3.879 25 C -0.125 4.125 26 C 0.045 3.955 27 C -0.110 4.110 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.035 0.965 35 H 0.085 0.915 36 H 0.050 0.950 37 H 0.095 0.905 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.412 0.588 41 H 0.411 0.589 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.028 0.972 46 H 0.058 0.942 47 H 0.262 0.738 48 H 0.059 0.941 49 H 0.031 0.969 50 H 0.074 0.926 51 H 0.090 0.910 52 H 0.073 0.927 53 H 0.032 0.968 54 H 0.070 0.930 55 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.694 14.769 16.898 36.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 C -0.146 4.146 4 C -0.072 4.072 5 N -0.268 5.268 6 C -0.073 4.073 7 C 0.017 3.983 8 N -0.389 5.389 9 C 0.400 3.600 10 O -0.517 6.517 11 N -0.381 5.381 12 C 0.073 3.927 13 C -0.168 4.168 14 C 0.021 3.979 15 N -0.343 5.343 16 C -0.379 4.379 17 H 0.070 0.930 18 C -0.227 4.227 19 N -0.601 5.601 20 Si 0.773 3.227 21 H -0.194 1.194 22 H -0.240 1.240 23 H -0.191 1.191 24 C -0.005 4.005 25 C -0.165 4.165 26 C -0.083 4.083 27 C -0.148 4.148 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.053 0.947 35 H 0.103 0.897 36 H 0.068 0.932 37 H 0.114 0.886 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.249 0.751 41 H 0.247 0.753 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.046 0.954 46 H 0.076 0.924 47 H 0.071 0.929 48 H 0.077 0.923 49 H 0.049 0.951 50 H 0.092 0.908 51 H 0.108 0.892 52 H 0.091 0.909 53 H 0.051 0.949 54 H 0.088 0.912 55 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -29.377 14.336 15.817 36.314 hybrid contribution 1.246 -0.075 0.167 1.260 sum -28.131 14.261 15.984 35.358 Atomic orbital electron populations 1.21786 0.94439 1.01876 1.02022 1.21189 0.96217 0.96228 0.97663 1.21634 0.94010 0.96426 1.02574 1.22154 0.96404 0.99187 0.89445 1.61959 1.11323 1.14508 1.39002 1.22172 0.87941 1.00535 0.96640 1.21214 0.78597 0.99502 0.99032 1.44823 1.08443 1.47329 1.38327 1.16096 0.82168 0.80668 0.81019 1.90906 1.66230 1.44718 1.49814 1.45075 1.05179 1.47795 1.40028 1.20570 0.92400 0.89793 0.89906 1.22264 0.99609 0.96032 0.98847 1.21004 0.87380 0.94727 0.94796 1.44494 1.04590 1.10056 1.75134 1.18868 0.88977 1.18357 1.11701 0.92962 1.25869 0.95031 1.00893 1.00876 1.69959 1.00732 1.52410 1.37047 0.85958 0.77557 0.78683 0.80533 1.19414 1.24026 1.19096 1.21383 0.98817 0.84725 0.95538 1.22144 0.95205 0.99130 1.00028 1.22254 0.96622 0.88715 1.00719 1.21641 0.93868 1.00733 0.98578 0.92743 0.92645 0.92090 0.91684 0.90292 0.91612 0.94710 0.89699 0.93178 0.88644 0.92501 0.92637 0.75120 0.75300 0.91610 0.91948 0.91902 0.95398 0.92384 0.92917 0.92296 0.95073 0.90769 0.89193 0.90893 0.94927 0.91170 0.91718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.21 71.98 0.66 -0.57 16 2 C -0.09 -0.95 2.79 -10.72 -0.03 -0.98 16 3 C -0.11 -1.01 5.38 30.64 0.16 -0.84 16 4 C 0.06 0.56 5.42 86.33 0.47 1.03 16 5 N -0.54 -7.12 4.81 -896.38 -4.31 -11.43 16 6 C 0.06 0.64 5.39 86.30 0.46 1.11 16 7 C 0.14 2.46 4.92 86.37 0.43 2.89 16 8 N -0.73 -12.85 5.56 -478.53 -2.66 -15.51 16 9 C 0.70 18.57 8.53 179.05 1.53 20.10 16 10 O -0.64 -23.14 16.01 -4.00 -0.06 -23.20 16 11 N -0.73 -17.15 5.08 -457.18 -2.32 -19.47 16 12 C 0.18 5.48 2.42 45.12 0.11 5.59 16 13 C -0.13 -4.29 5.68 30.78 0.17 -4.11 16 14 C 0.15 5.93 6.50 86.36 0.56 6.49 16 15 N -0.62 -29.15 2.77 -699.10 -1.94 -31.09 16 16 C -0.25 -14.18 10.03 84.03 0.84 -13.33 16 17 H 0.05 3.25 8.06 -2.91 -0.02 3.22 16 18 C -0.03 -1.85 5.23 84.86 0.44 -1.41 16 19 N -0.96 -59.77 13.97 21.65 0.30 -59.47 16 20 Si 0.94 46.37 24.34 68.60 1.67 48.04 16 21 H -0.27 -12.15 6.62 99.48 0.66 -11.49 16 22 H -0.31 -15.61 7.11 99.48 0.71 -14.90 16 23 H -0.27 -12.78 6.64 99.48 0.66 -12.12 16 24 C 0.12 4.99 4.21 86.36 0.36 5.35 16 25 C -0.13 -3.89 5.55 30.67 0.17 -3.72 16 26 C 0.04 0.63 4.85 86.33 0.42 1.05 16 27 C -0.11 -1.36 5.38 30.65 0.16 -1.20 16 28 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 30 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.08 0.70 8.12 -2.39 -0.02 0.68 16 36 H 0.05 0.51 8.08 -2.39 -0.02 0.49 16 37 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.06 1.13 6.21 -2.39 -0.01 1.12 16 40 H 0.41 4.29 8.49 -92.71 -0.79 3.50 16 41 H 0.41 6.85 8.62 -92.70 -0.80 6.05 16 42 H 0.07 2.31 7.58 -2.38 -0.02 2.29 16 43 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 44 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.06 2.38 7.93 -2.39 -0.02 2.37 16 47 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 48 H 0.06 2.65 4.50 -2.39 -0.01 2.64 16 49 H 0.03 1.28 7.07 -2.39 -0.02 1.26 16 50 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 51 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 52 H 0.07 1.21 5.81 -2.39 -0.01 1.20 16 53 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 54 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 55 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -72.87 411.57 -3.20 -76.07 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -0.82 Total: 18.62 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: 6.93 Total: 17.44 kcal Atomic # 7 Polarization: -126.04 SS G_CDS: -10.93 Total: -136.97 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.06 Total: -23.20 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 1.67 Total: 48.04 kcal Total: -72.87 -3.20 -76.07 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609341733.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.704 kcal (2) G-P(sol) polarization free energy of solvation -72.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds