Wall clock time and date at job start Tue Mar 31 2020 23:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47022 * 2 1 4 4 C 1.52994 * 109.47144 * 120.00033 * 2 1 3 5 5 H 1.09002 * 109.78697 * 186.53239 * 4 2 1 6 6 C 1.53238 * 109.63328 * 307.01763 * 4 2 1 7 7 N 1.46891 * 109.36623 * 173.55643 * 6 4 2 8 8 C 1.46897 * 111.00181 * 172.73756 * 7 6 4 9 9 C 1.46904 * 111.26714 * 296.88262 * 7 6 4 10 10 C 1.53237 * 109.34248 * 63.10351 * 9 7 6 11 11 N 1.47080 * 108.52089 * 306.17081 * 10 9 7 12 12 C 1.34769 * 120.88441 * 231.15874 * 11 10 9 13 13 O 1.21584 * 120.00344 * 175.52232 * 12 11 10 14 14 N 1.34782 * 119.99819 * 355.52521 * 12 11 10 15 15 C 1.46497 * 119.99810 * 184.92331 * 14 12 11 16 16 C 1.53039 * 109.46220 * 275.06262 * 15 14 12 17 17 C 1.53186 * 109.31531 * 178.61550 * 16 15 14 18 18 N 1.46932 * 108.77587 * 54.63707 * 17 16 15 19 19 C 1.36935 * 120.63121 * 126.36914 * 18 17 16 20 20 H 1.08004 * 119.99814 * 330.35440 * 19 18 17 21 21 C 1.38807 * 120.00236 * 150.35178 * 19 18 17 22 22 N 1.31619 * 119.99721 * 349.16704 * 21 19 18 23 23 Si 1.86795 * 120.00280 * 169.16491 * 21 19 18 24 24 H 1.48505 * 109.47091 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47014 * 120.00196 * 23 21 19 26 26 H 1.48502 * 109.47414 * 240.00170 * 23 21 19 27 27 C 1.46925 * 118.73482 * 306.39337 * 18 17 16 28 28 C 1.53046 * 109.45761 * 154.99832 * 15 14 12 29 29 H 1.09005 * 109.47329 * 315.04916 * 1 2 3 30 30 H 1.08996 * 109.47360 * 75.04416 * 1 2 3 31 31 H 1.09002 * 109.47391 * 195.05040 * 1 2 3 32 32 H 1.09005 * 109.46916 * 240.00177 * 2 1 3 33 33 H 1.08999 * 109.46679 * 174.31917 * 3 2 1 34 34 H 1.09002 * 109.47167 * 294.31585 * 3 2 1 35 35 H 1.09000 * 109.47448 * 54.32124 * 3 2 1 36 36 H 1.09001 * 109.48969 * 53.57787 * 6 4 2 37 37 H 1.09001 * 109.49027 * 293.53134 * 6 4 2 38 38 H 1.08995 * 109.47762 * 59.99586 * 8 7 6 39 39 H 1.09000 * 109.47344 * 180.02562 * 8 7 6 40 40 H 1.09006 * 109.46709 * 299.99575 * 8 7 6 41 41 H 1.08998 * 109.49450 * 183.07028 * 9 7 6 42 42 H 1.09003 * 109.49134 * 303.14401 * 9 7 6 43 43 H 1.08998 * 109.62806 * 65.87924 * 10 9 7 44 44 H 1.08992 * 109.62856 * 186.46086 * 10 9 7 45 45 H 0.96998 * 119.99844 * 4.91800 * 14 12 11 46 46 H 1.08996 * 109.46336 * 35.02799 * 15 14 12 47 47 H 1.08998 * 109.50041 * 298.57094 * 16 15 14 48 48 H 1.08999 * 109.49350 * 58.66372 * 16 15 14 49 49 H 1.09000 * 109.58923 * 294.85399 * 17 16 15 50 50 H 1.09004 * 109.70800 * 174.49572 * 17 16 15 51 51 H 0.97002 * 120.00116 * 179.97438 * 22 21 19 52 52 H 1.08993 * 109.58612 * 293.81384 * 27 18 17 53 53 H 1.09001 * 109.69551 * 173.46589 * 27 18 17 54 54 H 1.09000 * 109.49685 * 301.33527 * 28 15 14 55 55 H 1.08995 * 109.50027 * 61.40276 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 3.1237 -0.6243 1.3146 6 6 1.3923 -0.1108 2.4966 7 7 1.7644 -0.9034 3.6760 8 6 1.3067 -0.2548 4.9120 9 6 1.2492 -2.2758 3.5798 10 6 1.8909 -2.9757 2.3771 11 7 1.6743 -2.1450 1.1829 12 6 1.1551 -2.6738 0.0572 13 8 0.9070 -1.9570 -0.8930 14 7 0.9109 -3.9973 -0.0151 15 6 0.4486 -4.5891 -1.2730 16 6 -1.0722 -4.4503 -1.3732 17 6 -1.5481 -5.0390 -2.7049 18 7 -1.0599 -6.4206 -2.8126 19 6 -1.9273 -7.4492 -3.0672 20 1 -2.9525 -7.3862 -2.7334 21 6 -1.4889 -8.5728 -3.7543 22 7 -0.3128 -8.5656 -4.3452 23 14 -2.5680 -10.0951 -3.8403 24 1 -3.8319 -9.8484 -3.1006 25 1 -2.8777 -10.4027 -5.2598 26 1 -1.8526 -11.2442 -3.2295 27 6 0.3765 -6.6776 -2.6414 28 6 0.8308 -6.0706 -1.3103 29 1 -0.3634 0.7273 0.7261 30 1 -0.3634 0.2652 -0.9928 31 1 -0.3634 -0.9924 0.2669 32 1 1.8933 -0.5138 -0.8901 33 1 3.1252 1.4441 0.1017 34 1 1.7621 1.9261 -0.9365 35 1 1.5960 1.9849 0.8348 36 1 0.3083 -0.1150 2.3826 37 1 1.7408 0.9143 2.6226 38 1 0.2219 -0.1518 4.8882 39 1 1.5956 -0.8623 5.7697 40 1 1.7636 0.7314 4.9954 41 1 1.4941 -2.8210 4.4913 42 1 0.1671 -2.2499 3.4508 43 1 2.9603 -3.0954 2.5509 44 1 1.4291 -3.9523 2.2325 45 1 1.0413 -4.5579 0.7656 46 1 0.9162 -4.0723 -2.1110 47 1 -1.5417 -4.9878 -0.5493 48 1 -1.3454 -3.3963 -1.3230 49 1 -1.1515 -4.4461 -3.5291 50 1 -2.6375 -5.0325 -2.7413 51 1 -0.0063 -9.3509 -4.8250 52 1 0.9300 -6.2184 -3.4603 53 1 0.5592 -7.7522 -2.6342 54 1 1.9121 -6.1698 -1.2154 55 1 0.3439 -6.5928 -0.4867 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610025783.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:33 Heat of formation + Delta-G solvation = 11.300755 kcal Electronic energy + Delta-G solvation = -31992.321867 eV Core-core repulsion = 28065.286970 eV Total energy + Delta-G solvation = -3927.034897 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.05043 -39.81366 -38.68539 -36.99047 -35.64545 -35.40793 -33.63642 -31.73570 -31.07841 -30.93854 -29.15067 -27.98533 -26.93187 -25.38203 -25.13862 -23.91687 -23.62720 -22.33739 -21.39698 -21.06265 -20.22903 -18.85781 -18.28147 -17.41812 -16.92772 -16.83344 -16.55779 -16.14664 -15.87913 -15.66271 -15.63374 -15.39102 -15.32816 -14.86354 -14.66266 -14.49302 -14.24851 -14.03562 -14.03206 -13.63256 -13.22040 -13.13810 -12.99189 -12.92654 -12.89891 -12.67906 -12.64184 -12.52429 -12.27388 -12.23173 -12.09730 -12.00234 -11.88676 -11.77010 -11.63905 -11.55019 -11.42943 -11.29565 -10.57020 -10.17947 -9.81831 -9.60389 -9.19912 -8.67258 -7.86229 -5.36384 1.47461 1.48970 1.59658 1.64637 2.22670 2.51317 2.90375 2.93212 3.30444 3.67151 3.80953 3.87190 3.92457 3.97837 4.09283 4.14087 4.22401 4.25714 4.33115 4.36322 4.44803 4.47571 4.58008 4.66256 4.66748 4.66864 4.76019 4.79161 4.82538 4.84937 4.87774 4.89631 5.01733 5.03552 5.05039 5.07058 5.08358 5.17314 5.18422 5.29871 5.33481 5.43033 5.50151 5.53391 5.64171 5.69540 5.74712 5.83367 5.93620 6.02903 6.12082 6.41333 7.06329 7.15807 7.70154 7.84151 8.37294 9.20018 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.021124 B = 0.002606 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.165415 B =10740.890276 C =11342.906170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.094 4.094 3 C -0.145 4.145 4 C 0.176 3.824 5 H 0.078 0.922 6 C 0.049 3.951 7 N -0.549 5.549 8 C 0.026 3.974 9 C 0.043 3.957 10 C 0.112 3.888 11 N -0.628 5.628 12 C 0.698 3.302 13 O -0.602 6.602 14 N -0.733 5.733 15 C 0.186 3.814 16 C -0.120 4.120 17 C 0.146 3.854 18 N -0.610 5.610 19 C -0.261 4.261 20 H 0.066 0.934 21 C -0.051 4.051 22 N -0.937 5.937 23 Si 0.971 3.029 24 H -0.267 1.267 25 H -0.294 1.294 26 H -0.287 1.287 27 C 0.179 3.821 28 C -0.128 4.128 29 H 0.042 0.958 30 H 0.030 0.970 31 H 0.035 0.965 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.031 0.969 37 H 0.098 0.902 38 H 0.021 0.979 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.109 0.891 42 H 0.027 0.973 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.402 0.598 46 H 0.055 0.945 47 H 0.060 0.940 48 H 0.057 0.943 49 H 0.007 0.993 50 H 0.055 0.945 51 H 0.251 0.749 52 H -0.007 1.007 53 H 0.068 0.932 54 H 0.074 0.926 55 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.759 16.970 20.960 27.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.113 4.113 3 C -0.203 4.203 4 C 0.072 3.928 5 H 0.096 0.904 6 C -0.079 4.079 7 N -0.273 5.273 8 C -0.122 4.122 9 C -0.085 4.085 10 C -0.011 4.011 11 N -0.365 5.365 12 C 0.400 3.600 13 O -0.482 6.482 14 N -0.389 5.389 15 C 0.081 3.919 16 C -0.160 4.160 17 C 0.020 3.980 18 N -0.333 5.333 19 C -0.391 4.391 20 H 0.084 0.916 21 C -0.246 4.246 22 N -0.584 5.584 23 Si 0.799 3.201 24 H -0.191 1.191 25 H -0.221 1.221 26 H -0.214 1.214 27 C 0.053 3.947 28 C -0.168 4.168 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.049 0.951 37 H 0.116 0.884 38 H 0.040 0.960 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.127 0.873 42 H 0.045 0.955 43 H 0.105 0.895 44 H 0.110 0.890 45 H 0.239 0.761 46 H 0.073 0.927 47 H 0.079 0.921 48 H 0.075 0.925 49 H 0.025 0.975 50 H 0.073 0.927 51 H 0.060 0.940 52 H 0.011 0.989 53 H 0.086 0.914 54 H 0.093 0.907 55 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.155 17.332 20.215 27.572 hybrid contribution -1.413 -1.168 -0.412 1.878 sum 5.743 16.164 19.803 26.199 Atomic orbital electron populations 1.21658 0.95648 0.99412 0.99458 1.21610 0.96133 0.95739 0.97837 1.21925 1.01246 0.95168 1.01930 1.21287 0.98697 0.78095 0.94716 0.90361 1.22592 0.97956 0.98073 0.89312 1.61959 1.60054 1.02473 1.02826 1.22412 0.97897 1.00486 0.91395 1.22510 0.96620 0.90088 0.99322 1.21904 1.02198 0.93683 0.83273 1.47422 1.66542 1.10750 1.11831 1.16072 0.78376 0.82201 0.83343 1.90928 1.59423 1.58395 1.39473 1.45484 1.72042 1.06833 1.14592 1.20417 0.93531 0.92916 0.85085 1.22142 0.95983 0.99512 0.98398 1.20949 0.97444 0.85253 0.94347 1.44332 1.04137 1.01951 1.82928 1.19559 0.94106 0.96693 1.28753 0.91601 1.25891 0.98753 1.02715 0.97211 1.70141 1.21359 1.29494 1.37360 0.85145 0.78588 0.79386 0.76941 1.19134 1.22077 1.21356 1.20595 0.83008 0.99694 0.91409 1.22264 1.00732 0.93774 0.99985 0.93874 0.95060 0.94607 0.89709 0.91926 0.93003 0.91818 0.95054 0.88352 0.96022 0.90004 0.90417 0.87315 0.95516 0.89538 0.89033 0.76054 0.92654 0.92150 0.92475 0.97539 0.92691 0.94003 0.98916 0.91357 0.90735 0.91472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.73 6.72 71.98 0.48 -2.25 16 2 C -0.09 -2.21 2.16 -10.80 -0.02 -2.23 16 3 C -0.14 -2.54 8.84 71.98 0.64 -1.90 16 4 C 0.18 3.54 2.80 44.95 0.13 3.67 16 5 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 6 C 0.05 0.81 4.24 86.38 0.37 1.18 16 7 N -0.55 -7.83 4.88 -921.49 -4.50 -12.33 16 8 C 0.03 0.27 9.58 127.69 1.22 1.49 16 9 C 0.04 0.58 5.62 86.38 0.49 1.07 16 10 C 0.11 1.71 6.55 86.35 0.57 2.28 16 11 N -0.63 -13.75 2.88 -811.84 -2.33 -16.08 16 12 C 0.70 20.07 7.09 179.06 1.27 21.34 16 13 O -0.60 -21.17 9.78 -3.98 -0.04 -21.21 16 14 N -0.73 -20.07 4.99 -457.69 -2.28 -22.35 16 15 C 0.19 6.45 2.38 45.02 0.11 6.55 16 16 C -0.12 -4.42 5.65 30.67 0.17 -4.25 16 17 C 0.15 6.48 6.52 86.36 0.56 7.05 16 18 N -0.61 -31.20 3.00 -699.10 -2.09 -33.30 16 19 C -0.26 -14.44 9.60 84.03 0.81 -13.63 16 20 H 0.07 3.56 7.85 -2.91 -0.02 3.54 16 21 C -0.05 -2.83 5.06 84.86 0.43 -2.40 16 22 N -0.94 -55.33 10.93 21.65 0.24 -55.10 16 23 Si 0.97 44.72 29.57 68.60 2.03 46.75 16 24 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 25 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 26 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 27 C 0.18 8.66 5.27 86.36 0.46 9.12 16 28 C -0.13 -4.63 5.55 30.67 0.17 -4.46 16 29 H 0.04 0.95 7.00 -2.38 -0.02 0.93 16 30 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.03 1.09 5.58 -2.39 -0.01 1.07 16 32 H 0.09 2.62 5.76 -15.25 -0.09 2.53 16 33 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.06 0.92 6.99 -2.39 -0.02 0.90 16 36 H 0.03 0.61 6.33 -2.39 -0.02 0.60 16 37 H 0.10 1.33 7.07 -2.39 -0.02 1.32 16 38 H 0.02 0.24 8.14 -2.39 -0.02 0.23 16 39 H 0.08 0.66 8.08 -2.39 -0.02 0.64 16 40 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 41 H 0.11 1.00 8.06 -2.39 -0.02 0.98 16 42 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 43 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.09 1.20 5.72 -2.39 -0.01 1.19 16 45 H 0.40 8.70 6.13 -92.71 -0.57 8.13 16 46 H 0.06 2.23 7.65 -2.39 -0.02 2.21 16 47 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 48 H 0.06 2.10 8.09 -2.39 -0.02 2.08 16 49 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 50 H 0.05 2.38 7.93 -2.38 -0.02 2.36 16 51 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 52 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 53 H 0.07 3.70 5.97 -2.39 -0.01 3.68 16 54 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 55 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -67.16 399.33 -0.93 -68.09 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: 0.22 Total: 22.91 kcal Atomic # 6 Polarization: 14.78 SS G_CDS: 7.84 Total: 22.62 kcal Atomic # 7 Polarization: -128.18 SS G_CDS: -10.97 Total: -139.16 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.04 Total: -21.21 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -67.16 -0.93 -68.09 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610025783.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.389 kcal (2) G-P(sol) polarization free energy of solvation -67.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds