Wall clock time and date at job start Tue Mar 31 2020 22:49:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42897 * 1
3 3 C 1.42901 * 113.99987 * 2 1
4 4 C 1.53001 * 109.47024 * 180.02562 * 3 2 1
5 5 N 1.46902 * 109.47405 * 66.65883 * 4 3 2
6 6 C 1.46898 * 110.99980 * 157.89304 * 5 4 3
7 7 C 1.50701 * 109.47000 * 287.13669 * 6 5 4
8 8 H 1.08002 * 120.00137 * 4.86045 * 7 6 5
9 9 C 1.37879 * 120.00112 * 184.86453 * 7 6 5
10 10 N 1.31510 * 120.00197 * 180.02562 * 9 7 6
11 11 Si 1.86798 * 119.99757 * 359.97438 * 9 7 6
12 12 H 1.48496 * 109.47423 * 90.00000 * 11 9 7
13 13 H 1.48503 * 109.47272 * 210.00335 * 11 9 7
14 14 H 1.48501 * 109.47382 * 330.00149 * 11 9 7
15 15 C 1.46898 * 110.99983 * 281.84605 * 5 4 3
16 16 C 1.50697 * 109.47130 * 163.05730 * 15 5 4
17 17 O 1.21279 * 120.00203 * 0.02562 * 16 15 5
18 18 N 1.34778 * 119.99822 * 180.02562 * 16 15 5
19 19 C 1.47034 * 120.76257 * 3.83651 * 18 16 15
20 20 C 1.53158 * 108.86208 * 233.14821 * 19 18 16
21 21 C 1.53050 * 109.52964 * 305.80068 * 20 19 18
22 22 C 1.53359 * 109.25580 * 61.46442 * 21 20 19
23 23 H 1.09000 * 109.68528 * 178.00889 * 22 21 20
24 24 C 1.53064 * 108.77377 * 58.04369 * 22 21 20
25 25 C 1.52915 * 109.75361 * 182.23017 * 24 22 21
26 26 C 1.53067 * 109.26724 * 60.59188 * 25 24 22
27 27 C 1.52971 * 109.20512 * 299.30131 * 26 25 24
28 28 C 1.46747 * 120.76130 * 183.81993 * 18 16 15
29 29 H 1.08997 * 108.80718 * 244.86613 * 28 18 16
30 30 H 1.09001 * 109.47388 * 60.00284 * 1 2 3
31 31 H 1.09008 * 109.46843 * 180.02562 * 1 2 3
32 32 H 1.08997 * 109.47143 * 299.99632 * 1 2 3
33 33 H 1.08996 * 109.47257 * 59.99765 * 3 2 1
34 34 H 1.09006 * 109.46723 * 299.99713 * 3 2 1
35 35 H 1.08997 * 109.47188 * 306.65304 * 4 3 2
36 36 H 1.09005 * 109.46986 * 186.65655 * 4 3 2
37 37 H 1.08999 * 109.47194 * 47.13818 * 6 5 4
38 38 H 1.09006 * 109.46754 * 167.14063 * 6 5 4
39 39 H 0.97001 * 120.00005 * 179.97438 * 10 9 7
40 40 H 1.09001 * 109.47101 * 43.05877 * 15 5 4
41 41 H 1.08994 * 109.47159 * 283.06488 * 15 5 4
42 42 H 1.09001 * 109.56741 * 113.33829 * 19 18 16
43 43 H 1.08995 * 109.57120 * 352.96412 * 19 18 16
44 44 H 1.08998 * 109.45964 * 65.82049 * 20 19 18
45 45 H 1.09005 * 109.45566 * 185.78167 * 20 19 18
46 46 H 1.08994 * 109.50782 * 181.39766 * 21 20 19
47 47 H 1.09005 * 109.50817 * 301.53061 * 21 20 19
48 48 H 1.08997 * 109.42400 * 302.31633 * 24 22 21
49 49 H 1.09006 * 109.42419 * 62.14774 * 24 22 21
50 50 H 1.09000 * 109.50496 * 180.52695 * 25 24 22
51 51 H 1.09000 * 109.50596 * 300.65761 * 25 24 22
52 52 H 1.08997 * 109.51561 * 59.21694 * 26 25 24
53 53 H 1.08997 * 109.51626 * 179.38162 * 26 25 24
54 54 H 1.08997 * 109.39892 * 179.89963 * 27 26 25
55 55 H 1.09005 * 109.39761 * 299.71404 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5354 1.1846 -0.0006
5 7 3.9798 0.5992 -1.2726
6 6 5.3839 0.9344 -1.5443
7 6 5.4874 2.3867 -1.9332
8 1 4.6123 3.0187 -1.8985
9 6 6.6993 2.9087 -2.3332
10 7 6.7897 4.1761 -2.6721
11 14 8.2130 1.8157 -2.3926
12 1 8.3203 1.1911 -3.7355
13 1 9.4244 2.6330 -2.1286
14 1 8.0978 0.7540 -1.3607
15 6 3.7744 -0.8553 -1.2828
16 6 3.8384 -1.3617 -2.7007
17 8 4.0363 -0.5873 -3.6129
18 7 3.6759 -2.6752 -2.9552
19 6 3.3522 -3.6165 -1.8730
20 6 4.3663 -4.7640 -1.8949
21 6 4.3992 -5.3911 -3.2906
22 6 4.8436 -4.3346 -4.3095
23 1 4.9035 -4.7831 -5.3012
24 6 6.2194 -3.8032 -3.9000
25 6 6.6601 -2.7072 -4.8709
26 6 5.6502 -1.5578 -4.8272
27 6 4.2757 -2.0792 -5.2502
28 6 3.8176 -3.1988 -4.3187
29 1 2.8536 -3.5865 -4.6482
30 1 -0.3634 0.5138 -0.8900
31 1 -0.3633 -1.0278 0.0005
32 1 -0.3633 0.5138 0.8900
33 1 1.6886 1.8464 0.8899
34 1 1.6886 1.8463 -0.8901
35 1 3.8495 0.5442 0.8235
36 1 3.9783 2.1735 0.1185
37 1 5.9802 0.7544 -0.6498
38 1 5.7547 0.3128 -2.3594
39 1 7.6424 4.5434 -2.9532
40 1 2.7977 -1.0873 -0.8580
41 1 4.5520 -1.3363 -0.6897
42 1 2.3482 -4.0136 -2.0226
43 1 3.4040 -3.1016 -0.9136
44 1 5.3554 -4.3793 -1.6462
45 1 4.0762 -5.5190 -1.1642
46 1 5.1028 -6.2235 -3.2992
47 1 3.4041 -5.7520 -3.5510
48 1 6.1642 -3.3934 -2.8915
49 1 6.9433 -4.6179 -3.9202
50 1 7.6440 -2.3384 -4.5811
51 1 6.7060 -3.1131 -5.8815
52 1 5.5931 -1.1616 -3.8134
53 1 5.9664 -0.7691 -5.5100
54 1 3.5536 -1.2634 -5.2185
55 1 4.3341 -2.4716 -6.2655
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000610391655.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:49:02
Heat of formation + Delta-G solvation = -59.288901 kcal
Electronic energy + Delta-G solvation = -33402.751628 eV
Core-core repulsion = 29440.362983 eV
Total energy + Delta-G solvation = -3962.388645 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 338.236 amu
Computer time = 1.08 seconds
Orbital eigenvalues (eV)
-42.26386 -39.62306 -38.68646 -37.33435 -36.55774 -34.62052 -33.94988 -31.86474
-31.16937 -30.74802 -29.78575 -27.53270 -26.56659 -25.85143 -24.18891 -23.86499
-23.56906 -22.12930 -21.68567 -20.83164 -19.01056 -18.78212 -17.99704 -17.40950
-17.19088 -16.79381 -16.68538 -16.29728 -16.16155 -15.93367 -15.69955 -15.50102
-15.21086 -14.95061 -14.74350 -14.45841 -14.22271 -14.10745 -13.87602 -13.75927
-13.42800 -13.22317 -13.10229 -13.05429 -12.90631 -12.87006 -12.68829 -12.47807
-12.22611 -12.10603 -12.05656 -11.95852 -11.80245 -11.68441 -11.47496 -11.25788
-11.13835 -10.91638 -10.85456 -10.76344 -10.48915 -9.76513 -9.20831 -8.92956
-8.28129 -6.26854 1.25365 1.29765 1.36979 1.88070 2.12360 2.31198
2.90987 3.05246 3.23638 3.64036 3.78067 3.80964 3.97359 4.12475
4.14244 4.19876 4.29321 4.32481 4.35320 4.39153 4.43306 4.46297
4.54271 4.55597 4.59465 4.62549 4.64341 4.70795 4.74254 4.81474
4.82268 4.86553 4.88774 4.92764 4.97787 5.03542 5.07489 5.08651
5.15949 5.18322 5.23118 5.26169 5.36767 5.38934 5.52880 5.57433
5.58179 5.70323 5.91842 5.98963 6.27770 6.38850 6.57826 6.72943
6.76554 7.34485 7.54785 8.89035
Molecular weight = 338.24amu
Principal moments of inertia in cm(-1)
A = 0.008502 B = 0.006041 C = 0.003987
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3292.715399 B = 4633.945896 C = 7020.938391
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.027 3.973
2 O -0.403 6.403
3 C 0.079 3.921
4 C 0.063 3.937
5 N -0.526 5.526
6 C 0.183 3.817
7 C -0.496 4.496
8 H 0.039 0.961
9 C 0.012 3.988
10 N -0.947 5.947
11 Si 0.935 3.065
12 H -0.279 1.279
13 H -0.276 1.276
14 H -0.253 1.253
15 C 0.035 3.965
16 C 0.494 3.506
17 O -0.523 6.523
18 N -0.608 5.608
19 C 0.104 3.896
20 C -0.136 4.136
21 C -0.107 4.107
22 C -0.093 4.093
23 H 0.093 0.907
24 C -0.105 4.105
25 C -0.124 4.124
26 C -0.123 4.123
27 C -0.102 4.102
28 C 0.156 3.844
29 H 0.083 0.917
30 H 0.033 0.967
31 H 0.102 0.898
32 H 0.052 0.948
33 H 0.073 0.927
34 H 0.038 0.962
35 H 0.049 0.951
36 H 0.076 0.924
37 H -0.018 1.018
38 H 0.020 0.980
39 H 0.264 0.736
40 H 0.137 0.863
41 H 0.052 0.948
42 H 0.087 0.913
43 H 0.084 0.916
44 H 0.055 0.945
45 H 0.098 0.902
46 H 0.078 0.922
47 H 0.079 0.921
48 H 0.048 0.952
49 H 0.075 0.925
50 H 0.039 0.961
51 H 0.069 0.931
52 H 0.070 0.930
53 H 0.019 0.981
54 H 0.063 0.937
55 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.773 -24.355 4.001 26.546
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 O -0.323 6.323
3 C 0.003 3.997
4 C -0.064 4.064
5 N -0.250 5.250
6 C 0.056 3.944
7 C -0.534 4.534
8 H 0.057 0.943
9 C -0.185 4.185
10 N -0.589 5.589
11 Si 0.760 3.240
12 H -0.205 1.205
13 H -0.202 1.202
14 H -0.177 1.177
15 C -0.095 4.095
16 C 0.283 3.717
17 O -0.400 6.400
18 N -0.343 5.343
19 C -0.018 4.018
20 C -0.174 4.174
21 C -0.145 4.145
22 C -0.112 4.112
23 H 0.111 0.889
24 C -0.143 4.143
25 C -0.162 4.162
26 C -0.160 4.160
27 C -0.139 4.139
28 C 0.054 3.946
29 H 0.100 0.900
30 H 0.052 0.948
31 H 0.120 0.880
32 H 0.071 0.929
33 H 0.091 0.909
34 H 0.056 0.944
35 H 0.067 0.933
36 H 0.094 0.906
37 H -0.001 1.001
38 H 0.038 0.962
39 H 0.073 0.927
40 H 0.154 0.846
41 H 0.069 0.931
42 H 0.105 0.895
43 H 0.103 0.897
44 H 0.074 0.926
45 H 0.116 0.884
46 H 0.096 0.904
47 H 0.098 0.902
48 H 0.066 0.934
49 H 0.094 0.906
50 H 0.058 0.942
51 H 0.088 0.912
52 H 0.088 0.912
53 H 0.037 0.963
54 H 0.081 0.919
55 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -9.733 -23.764 3.101 25.866
hybrid contribution 1.348 0.681 0.144 1.517
sum -8.385 -23.083 3.245 24.772
Atomic orbital electron populations
1.22879 0.79965 1.03734 1.00266 1.87697 1.21074 1.28132 1.95387
1.22486 0.92399 0.84628 1.00237 1.22097 0.94298 1.00324 0.89724
1.61450 1.21703 1.09053 1.32806 1.19852 0.85491 0.95305 0.93782
1.21185 0.94945 0.94448 1.42855 0.94293 1.25669 1.01819 0.96107
0.94918 1.70030 1.26437 1.14601 1.47841 0.85897 0.79458 0.79533
0.79126 1.20475 1.20155 1.17669 1.22308 1.04334 0.89169 0.93706
1.20742 0.77101 0.82335 0.91504 1.90781 1.45951 1.57322 1.45972
1.48062 1.70796 1.06194 1.09297 1.21956 0.99575 0.90481 0.89817
1.21981 0.99210 0.97659 0.98535 1.21594 1.02545 0.96877 0.93436
1.21575 0.93661 0.95085 1.00867 0.88926 1.21530 0.97042 0.97412
0.98267 1.21652 0.97539 0.96563 1.00419 1.22081 0.95206 0.96327
1.02413 1.21659 0.97279 0.97552 0.97440 1.21183 0.98613 0.93624
0.81212 0.89962 0.94814 0.87974 0.92890 0.90876 0.94404 0.93322
0.90600 1.00095 0.96185 0.92663 0.84598 0.93051 0.89477 0.89736
0.92600 0.88383 0.90353 0.90247 0.93357 0.90603 0.94209 0.91234
0.91249 0.96252 0.91897 0.92379
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.54 11.01 113.37 1.25 1.78 16
2 O -0.40 -10.98 7.87 -148.98 -1.17 -12.15 16
3 C 0.08 2.45 6.26 71.98 0.45 2.90 16
4 C 0.06 2.38 5.36 86.30 0.46 2.84 16
5 N -0.53 -23.01 3.97 -905.37 -3.59 -26.60 16
6 C 0.18 9.45 3.33 85.56 0.28 9.73 16
7 C -0.50 -30.45 8.98 25.60 0.23 -30.22 16
8 H 0.04 2.63 7.88 -2.91 -0.02 2.61 16
9 C 0.01 0.72 5.47 84.66 0.46 1.18 16
10 N -0.95 -62.19 13.96 21.45 0.30 -61.89 16
11 Si 0.94 48.06 27.37 68.60 1.88 49.93 16
12 H -0.28 -14.43 7.11 99.48 0.71 -13.73 16
13 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16
14 H -0.25 -12.13 6.68 99.48 0.66 -11.47 16
15 C 0.04 1.24 3.59 85.56 0.31 1.54 16
16 C 0.49 17.86 5.97 87.66 0.52 18.39 16
17 O -0.52 -23.83 8.67 -3.03 -0.03 -23.86 16
18 N -0.61 -15.97 2.39 -796.10 -1.90 -17.88 16
19 C 0.10 1.82 6.35 86.33 0.55 2.37 16
20 C -0.14 -1.90 5.71 30.66 0.17 -1.72 16
21 C -0.11 -1.38 5.43 30.73 0.17 -1.21 16
22 C -0.09 -1.73 2.59 -10.63 -0.03 -1.76 16
23 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16
24 C -0.11 -2.46 4.69 30.59 0.14 -2.31 16
25 C -0.12 -3.68 5.92 30.59 0.18 -3.49 16
26 C -0.12 -4.67 4.80 30.61 0.15 -4.52 16
27 C -0.10 -3.26 4.79 30.48 0.15 -3.12 16
28 C 0.16 3.79 2.99 44.86 0.13 3.93 16
29 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16
30 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16
31 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16
32 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16
33 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16
34 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16
35 H 0.05 1.62 7.96 -2.39 -0.02 1.60 16
36 H 0.08 3.24 7.03 -2.38 -0.02 3.22 16
37 H -0.02 -0.94 7.43 -2.39 -0.02 -0.96 16
38 H 0.02 1.10 4.78 -2.38 -0.01 1.09 16
39 H 0.26 16.24 8.31 -92.71 -0.77 15.47 16
40 H 0.14 4.17 4.74 -2.39 -0.01 4.16 16
41 H 0.05 1.69 7.75 -2.39 -0.02 1.67 16
42 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16
43 H 0.08 1.49 5.95 -2.39 -0.01 1.48 16
44 H 0.06 0.99 6.19 -2.39 -0.01 0.97 16
45 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16
46 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16
47 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16
48 H 0.05 1.30 5.79 -2.39 -0.01 1.29 16
49 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16
50 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16
51 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16
52 H 0.07 3.12 3.56 -47.73 -0.17 2.95 16
53 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16
54 H 0.06 2.46 6.09 -2.51 -0.02 2.45 16
55 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16
Total: -1.00 -78.09 392.11 1.72 -76.37
By element:
Atomic # 1 Polarization: 19.11 SS G_CDS: 0.65 Total: 19.77 kcal
Atomic # 6 Polarization: -9.27 SS G_CDS: 5.58 Total: -3.69 kcal
Atomic # 7 Polarization: -101.17 SS G_CDS: -5.20 Total: -106.37 kcal
Atomic # 8 Polarization: -34.81 SS G_CDS: -1.20 Total: -36.01 kcal
Atomic # 14 Polarization: 48.06 SS G_CDS: 1.88 Total: 49.93 kcal
Total: -78.09 1.72 -76.37 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000610391655.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 17.081 kcal
(2) G-P(sol) polarization free energy of solvation -78.086 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.005 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.716 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.370 kcal
(6) G-S(sol) free energy of system = (1) + (5) -59.289 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.08 seconds