Wall clock time and date at job start Tue Mar 31 2020 22:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99987 * 2 1 4 4 C 1.53001 * 109.47024 * 180.02562 * 3 2 1 5 5 N 1.46902 * 109.47405 * 66.65883 * 4 3 2 6 6 C 1.46898 * 110.99980 * 157.89304 * 5 4 3 7 7 C 1.50701 * 109.47000 * 287.13669 * 6 5 4 8 8 H 1.08002 * 120.00137 * 4.86045 * 7 6 5 9 9 C 1.37879 * 120.00112 * 184.86453 * 7 6 5 10 10 N 1.31510 * 120.00197 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 119.99757 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.47423 * 90.00000 * 11 9 7 13 13 H 1.48503 * 109.47272 * 210.00335 * 11 9 7 14 14 H 1.48501 * 109.47382 * 330.00149 * 11 9 7 15 15 C 1.46898 * 110.99983 * 281.84605 * 5 4 3 16 16 C 1.50697 * 109.47130 * 163.05730 * 15 5 4 17 17 O 1.21279 * 120.00203 * 0.02562 * 16 15 5 18 18 N 1.34778 * 119.99822 * 180.02562 * 16 15 5 19 19 C 1.47034 * 120.76257 * 3.83651 * 18 16 15 20 20 C 1.53158 * 108.86208 * 233.14821 * 19 18 16 21 21 C 1.53050 * 109.52964 * 305.80068 * 20 19 18 22 22 C 1.53359 * 109.25580 * 61.46442 * 21 20 19 23 23 H 1.09000 * 109.68528 * 178.00889 * 22 21 20 24 24 C 1.53064 * 108.77377 * 58.04369 * 22 21 20 25 25 C 1.52915 * 109.75361 * 182.23017 * 24 22 21 26 26 C 1.53067 * 109.26724 * 60.59188 * 25 24 22 27 27 C 1.52971 * 109.20512 * 299.30131 * 26 25 24 28 28 C 1.46747 * 120.76130 * 183.81993 * 18 16 15 29 29 H 1.08997 * 108.80718 * 244.86613 * 28 18 16 30 30 H 1.09001 * 109.47388 * 60.00284 * 1 2 3 31 31 H 1.09008 * 109.46843 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47143 * 299.99632 * 1 2 3 33 33 H 1.08996 * 109.47257 * 59.99765 * 3 2 1 34 34 H 1.09006 * 109.46723 * 299.99713 * 3 2 1 35 35 H 1.08997 * 109.47188 * 306.65304 * 4 3 2 36 36 H 1.09005 * 109.46986 * 186.65655 * 4 3 2 37 37 H 1.08999 * 109.47194 * 47.13818 * 6 5 4 38 38 H 1.09006 * 109.46754 * 167.14063 * 6 5 4 39 39 H 0.97001 * 120.00005 * 179.97438 * 10 9 7 40 40 H 1.09001 * 109.47101 * 43.05877 * 15 5 4 41 41 H 1.08994 * 109.47159 * 283.06488 * 15 5 4 42 42 H 1.09001 * 109.56741 * 113.33829 * 19 18 16 43 43 H 1.08995 * 109.57120 * 352.96412 * 19 18 16 44 44 H 1.08998 * 109.45964 * 65.82049 * 20 19 18 45 45 H 1.09005 * 109.45566 * 185.78167 * 20 19 18 46 46 H 1.08994 * 109.50782 * 181.39766 * 21 20 19 47 47 H 1.09005 * 109.50817 * 301.53061 * 21 20 19 48 48 H 1.08997 * 109.42400 * 302.31633 * 24 22 21 49 49 H 1.09006 * 109.42419 * 62.14774 * 24 22 21 50 50 H 1.09000 * 109.50496 * 180.52695 * 25 24 22 51 51 H 1.09000 * 109.50596 * 300.65761 * 25 24 22 52 52 H 1.08997 * 109.51561 * 59.21694 * 26 25 24 53 53 H 1.08997 * 109.51626 * 179.38162 * 26 25 24 54 54 H 1.08997 * 109.39892 * 179.89963 * 27 26 25 55 55 H 1.09005 * 109.39761 * 299.71404 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9798 0.5992 -1.2726 6 6 5.3839 0.9344 -1.5443 7 6 5.4874 2.3867 -1.9332 8 1 4.6123 3.0187 -1.8985 9 6 6.6993 2.9087 -2.3332 10 7 6.7897 4.1761 -2.6721 11 14 8.2130 1.8157 -2.3926 12 1 8.3203 1.1911 -3.7355 13 1 9.4244 2.6330 -2.1286 14 1 8.0978 0.7540 -1.3607 15 6 3.7744 -0.8553 -1.2828 16 6 3.8384 -1.3617 -2.7007 17 8 4.0363 -0.5873 -3.6129 18 7 3.6759 -2.6752 -2.9552 19 6 3.3522 -3.6165 -1.8730 20 6 4.3663 -4.7640 -1.8949 21 6 4.3992 -5.3911 -3.2906 22 6 4.8436 -4.3346 -4.3095 23 1 4.9035 -4.7831 -5.3012 24 6 6.2194 -3.8032 -3.9000 25 6 6.6601 -2.7072 -4.8709 26 6 5.6502 -1.5578 -4.8272 27 6 4.2757 -2.0792 -5.2502 28 6 3.8176 -3.1988 -4.3187 29 1 2.8536 -3.5865 -4.6482 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8463 -0.8901 35 1 3.8495 0.5442 0.8235 36 1 3.9783 2.1735 0.1185 37 1 5.9802 0.7544 -0.6498 38 1 5.7547 0.3128 -2.3594 39 1 7.6424 4.5434 -2.9532 40 1 2.7977 -1.0873 -0.8580 41 1 4.5520 -1.3363 -0.6897 42 1 2.3482 -4.0136 -2.0226 43 1 3.4040 -3.1016 -0.9136 44 1 5.3554 -4.3793 -1.6462 45 1 4.0762 -5.5190 -1.1642 46 1 5.1028 -6.2235 -3.2992 47 1 3.4041 -5.7520 -3.5510 48 1 6.1642 -3.3934 -2.8915 49 1 6.9433 -4.6179 -3.9202 50 1 7.6440 -2.3384 -4.5811 51 1 6.7060 -3.1131 -5.8815 52 1 5.5931 -1.1616 -3.8134 53 1 5.9664 -0.7691 -5.5100 54 1 3.5536 -1.2634 -5.2185 55 1 4.3341 -2.4716 -6.2655 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610391655.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:02 Heat of formation + Delta-G solvation = -59.288901 kcal Electronic energy + Delta-G solvation = -33402.751628 eV Core-core repulsion = 29440.362983 eV Total energy + Delta-G solvation = -3962.388645 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.26386 -39.62306 -38.68646 -37.33435 -36.55774 -34.62052 -33.94988 -31.86474 -31.16937 -30.74802 -29.78575 -27.53270 -26.56659 -25.85143 -24.18891 -23.86499 -23.56906 -22.12930 -21.68567 -20.83164 -19.01056 -18.78212 -17.99704 -17.40950 -17.19088 -16.79381 -16.68538 -16.29728 -16.16155 -15.93367 -15.69955 -15.50102 -15.21086 -14.95061 -14.74350 -14.45841 -14.22271 -14.10745 -13.87602 -13.75927 -13.42800 -13.22317 -13.10229 -13.05429 -12.90631 -12.87006 -12.68829 -12.47807 -12.22611 -12.10603 -12.05656 -11.95852 -11.80245 -11.68441 -11.47496 -11.25788 -11.13835 -10.91638 -10.85456 -10.76344 -10.48915 -9.76513 -9.20831 -8.92956 -8.28129 -6.26854 1.25365 1.29765 1.36979 1.88070 2.12360 2.31198 2.90987 3.05246 3.23638 3.64036 3.78067 3.80964 3.97359 4.12475 4.14244 4.19876 4.29321 4.32481 4.35320 4.39153 4.43306 4.46297 4.54271 4.55597 4.59465 4.62549 4.64341 4.70795 4.74254 4.81474 4.82268 4.86553 4.88774 4.92764 4.97787 5.03542 5.07489 5.08651 5.15949 5.18322 5.23118 5.26169 5.36767 5.38934 5.52880 5.57433 5.58179 5.70323 5.91842 5.98963 6.27770 6.38850 6.57826 6.72943 6.76554 7.34485 7.54785 8.89035 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.008502 B = 0.006041 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3292.715399 B = 4633.945896 C = 7020.938391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.403 6.403 3 C 0.079 3.921 4 C 0.063 3.937 5 N -0.526 5.526 6 C 0.183 3.817 7 C -0.496 4.496 8 H 0.039 0.961 9 C 0.012 3.988 10 N -0.947 5.947 11 Si 0.935 3.065 12 H -0.279 1.279 13 H -0.276 1.276 14 H -0.253 1.253 15 C 0.035 3.965 16 C 0.494 3.506 17 O -0.523 6.523 18 N -0.608 5.608 19 C 0.104 3.896 20 C -0.136 4.136 21 C -0.107 4.107 22 C -0.093 4.093 23 H 0.093 0.907 24 C -0.105 4.105 25 C -0.124 4.124 26 C -0.123 4.123 27 C -0.102 4.102 28 C 0.156 3.844 29 H 0.083 0.917 30 H 0.033 0.967 31 H 0.102 0.898 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.038 0.962 35 H 0.049 0.951 36 H 0.076 0.924 37 H -0.018 1.018 38 H 0.020 0.980 39 H 0.264 0.736 40 H 0.137 0.863 41 H 0.052 0.948 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.055 0.945 45 H 0.098 0.902 46 H 0.078 0.922 47 H 0.079 0.921 48 H 0.048 0.952 49 H 0.075 0.925 50 H 0.039 0.961 51 H 0.069 0.931 52 H 0.070 0.930 53 H 0.019 0.981 54 H 0.063 0.937 55 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.773 -24.355 4.001 26.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.323 6.323 3 C 0.003 3.997 4 C -0.064 4.064 5 N -0.250 5.250 6 C 0.056 3.944 7 C -0.534 4.534 8 H 0.057 0.943 9 C -0.185 4.185 10 N -0.589 5.589 11 Si 0.760 3.240 12 H -0.205 1.205 13 H -0.202 1.202 14 H -0.177 1.177 15 C -0.095 4.095 16 C 0.283 3.717 17 O -0.400 6.400 18 N -0.343 5.343 19 C -0.018 4.018 20 C -0.174 4.174 21 C -0.145 4.145 22 C -0.112 4.112 23 H 0.111 0.889 24 C -0.143 4.143 25 C -0.162 4.162 26 C -0.160 4.160 27 C -0.139 4.139 28 C 0.054 3.946 29 H 0.100 0.900 30 H 0.052 0.948 31 H 0.120 0.880 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.094 0.906 37 H -0.001 1.001 38 H 0.038 0.962 39 H 0.073 0.927 40 H 0.154 0.846 41 H 0.069 0.931 42 H 0.105 0.895 43 H 0.103 0.897 44 H 0.074 0.926 45 H 0.116 0.884 46 H 0.096 0.904 47 H 0.098 0.902 48 H 0.066 0.934 49 H 0.094 0.906 50 H 0.058 0.942 51 H 0.088 0.912 52 H 0.088 0.912 53 H 0.037 0.963 54 H 0.081 0.919 55 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.733 -23.764 3.101 25.866 hybrid contribution 1.348 0.681 0.144 1.517 sum -8.385 -23.083 3.245 24.772 Atomic orbital electron populations 1.22879 0.79965 1.03734 1.00266 1.87697 1.21074 1.28132 1.95387 1.22486 0.92399 0.84628 1.00237 1.22097 0.94298 1.00324 0.89724 1.61450 1.21703 1.09053 1.32806 1.19852 0.85491 0.95305 0.93782 1.21185 0.94945 0.94448 1.42855 0.94293 1.25669 1.01819 0.96107 0.94918 1.70030 1.26437 1.14601 1.47841 0.85897 0.79458 0.79533 0.79126 1.20475 1.20155 1.17669 1.22308 1.04334 0.89169 0.93706 1.20742 0.77101 0.82335 0.91504 1.90781 1.45951 1.57322 1.45972 1.48062 1.70796 1.06194 1.09297 1.21956 0.99575 0.90481 0.89817 1.21981 0.99210 0.97659 0.98535 1.21594 1.02545 0.96877 0.93436 1.21575 0.93661 0.95085 1.00867 0.88926 1.21530 0.97042 0.97412 0.98267 1.21652 0.97539 0.96563 1.00419 1.22081 0.95206 0.96327 1.02413 1.21659 0.97279 0.97552 0.97440 1.21183 0.98613 0.93624 0.81212 0.89962 0.94814 0.87974 0.92890 0.90876 0.94404 0.93322 0.90600 1.00095 0.96185 0.92663 0.84598 0.93051 0.89477 0.89736 0.92600 0.88383 0.90353 0.90247 0.93357 0.90603 0.94209 0.91234 0.91249 0.96252 0.91897 0.92379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 113.37 1.25 1.78 16 2 O -0.40 -10.98 7.87 -148.98 -1.17 -12.15 16 3 C 0.08 2.45 6.26 71.98 0.45 2.90 16 4 C 0.06 2.38 5.36 86.30 0.46 2.84 16 5 N -0.53 -23.01 3.97 -905.37 -3.59 -26.60 16 6 C 0.18 9.45 3.33 85.56 0.28 9.73 16 7 C -0.50 -30.45 8.98 25.60 0.23 -30.22 16 8 H 0.04 2.63 7.88 -2.91 -0.02 2.61 16 9 C 0.01 0.72 5.47 84.66 0.46 1.18 16 10 N -0.95 -62.19 13.96 21.45 0.30 -61.89 16 11 Si 0.94 48.06 27.37 68.60 1.88 49.93 16 12 H -0.28 -14.43 7.11 99.48 0.71 -13.73 16 13 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 14 H -0.25 -12.13 6.68 99.48 0.66 -11.47 16 15 C 0.04 1.24 3.59 85.56 0.31 1.54 16 16 C 0.49 17.86 5.97 87.66 0.52 18.39 16 17 O -0.52 -23.83 8.67 -3.03 -0.03 -23.86 16 18 N -0.61 -15.97 2.39 -796.10 -1.90 -17.88 16 19 C 0.10 1.82 6.35 86.33 0.55 2.37 16 20 C -0.14 -1.90 5.71 30.66 0.17 -1.72 16 21 C -0.11 -1.38 5.43 30.73 0.17 -1.21 16 22 C -0.09 -1.73 2.59 -10.63 -0.03 -1.76 16 23 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 24 C -0.11 -2.46 4.69 30.59 0.14 -2.31 16 25 C -0.12 -3.68 5.92 30.59 0.18 -3.49 16 26 C -0.12 -4.67 4.80 30.61 0.15 -4.52 16 27 C -0.10 -3.26 4.79 30.48 0.15 -3.12 16 28 C 0.16 3.79 2.99 44.86 0.13 3.93 16 29 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 32 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 35 H 0.05 1.62 7.96 -2.39 -0.02 1.60 16 36 H 0.08 3.24 7.03 -2.38 -0.02 3.22 16 37 H -0.02 -0.94 7.43 -2.39 -0.02 -0.96 16 38 H 0.02 1.10 4.78 -2.38 -0.01 1.09 16 39 H 0.26 16.24 8.31 -92.71 -0.77 15.47 16 40 H 0.14 4.17 4.74 -2.39 -0.01 4.16 16 41 H 0.05 1.69 7.75 -2.39 -0.02 1.67 16 42 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.08 1.49 5.95 -2.39 -0.01 1.48 16 44 H 0.06 0.99 6.19 -2.39 -0.01 0.97 16 45 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 46 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 48 H 0.05 1.30 5.79 -2.39 -0.01 1.29 16 49 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 50 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 51 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 52 H 0.07 3.12 3.56 -47.73 -0.17 2.95 16 53 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 54 H 0.06 2.46 6.09 -2.51 -0.02 2.45 16 55 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 Total: -1.00 -78.09 392.11 1.72 -76.37 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 0.65 Total: 19.77 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: 5.58 Total: -3.69 kcal Atomic # 7 Polarization: -101.17 SS G_CDS: -5.20 Total: -106.37 kcal Atomic # 8 Polarization: -34.81 SS G_CDS: -1.20 Total: -36.01 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 1.88 Total: 49.93 kcal Total: -78.09 1.72 -76.37 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610391655.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.081 kcal (2) G-P(sol) polarization free energy of solvation -78.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds