Wall clock time and date at job start Tue Mar 31 2020 22:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 113.99829 * 2 1 4 4 C 1.53001 * 109.47011 * 184.68463 * 3 2 1 5 5 N 1.46900 * 109.47072 * 66.10161 * 4 3 2 6 6 C 1.46899 * 111.00195 * 286.75245 * 5 4 3 7 7 C 1.50696 * 109.47376 * 302.79849 * 6 5 4 8 8 H 1.08006 * 119.99581 * 354.87507 * 7 6 5 9 9 C 1.37874 * 120.00466 * 174.87879 * 7 6 5 10 10 N 1.31523 * 119.99585 * 5.17908 * 9 7 6 11 11 Si 1.86801 * 120.00441 * 185.17913 * 9 7 6 12 12 H 1.48498 * 109.46856 * 94.99075 * 11 9 7 13 13 H 1.48495 * 109.47384 * 214.99252 * 11 9 7 14 14 H 1.48496 * 109.46998 * 334.99401 * 11 9 7 15 15 C 1.46900 * 110.99986 * 162.79719 * 5 4 3 16 16 C 1.50705 * 109.46958 * 190.00226 * 15 5 4 17 17 O 1.21280 * 120.00127 * 359.97438 * 16 15 5 18 18 N 1.34780 * 119.99696 * 180.02562 * 16 15 5 19 19 C 1.47025 * 120.75731 * 352.17119 * 18 16 15 20 20 C 1.53166 * 108.86290 * 126.82444 * 19 18 16 21 21 C 1.53057 * 109.52448 * 54.19129 * 20 19 18 22 22 C 1.53345 * 109.25417 * 298.53521 * 21 20 19 23 23 H 1.09001 * 109.68921 * 182.78438 * 22 21 20 24 24 C 1.53073 * 108.77116 * 302.74061 * 22 21 20 25 25 C 1.52913 * 109.75323 * 177.76455 * 24 22 21 26 26 C 1.53065 * 109.27306 * 299.41688 * 25 24 22 27 27 C 1.52961 * 109.20387 * 60.69667 * 26 25 24 28 28 C 1.46744 * 120.75625 * 171.89542 * 18 16 15 29 29 H 1.09005 * 109.30087 * 114.88087 * 28 18 16 30 30 H 1.08997 * 109.47254 * 304.93446 * 1 2 3 31 31 H 1.08995 * 109.46629 * 64.93358 * 1 2 3 32 32 H 1.08998 * 109.47039 * 184.93149 * 1 2 3 33 33 H 1.08999 * 109.47372 * 64.68849 * 3 2 1 34 34 H 1.08994 * 109.47265 * 304.68163 * 3 2 1 35 35 H 1.09007 * 109.47179 * 306.10532 * 4 3 2 36 36 H 1.08995 * 109.47472 * 186.10344 * 4 3 2 37 37 H 1.08997 * 109.46959 * 62.80147 * 6 5 4 38 38 H 1.09005 * 109.47018 * 182.79616 * 6 5 4 39 39 H 0.96994 * 119.99385 * 179.97438 * 10 9 7 40 40 H 1.08999 * 109.47377 * 70.00397 * 15 5 4 41 41 H 1.08996 * 109.47342 * 309.99998 * 15 5 4 42 42 H 1.08994 * 109.57457 * 246.63734 * 19 18 16 43 43 H 1.08999 * 109.57545 * 7.01106 * 19 18 16 44 44 H 1.09000 * 109.45956 * 174.20622 * 20 19 18 45 45 H 1.08991 * 109.46261 * 294.18300 * 20 19 18 46 46 H 1.09000 * 109.50728 * 58.46869 * 21 20 19 47 47 H 1.09000 * 109.50832 * 178.59699 * 21 20 19 48 48 H 1.09002 * 109.42609 * 297.85488 * 24 22 21 49 49 H 1.09000 * 109.41999 * 57.68059 * 24 22 21 50 50 H 1.08995 * 109.50334 * 59.35593 * 25 24 22 51 51 H 1.09004 * 109.50247 * 179.47926 * 25 24 22 52 52 H 1.08997 * 109.51550 * 180.61565 * 26 25 24 53 53 H 1.09006 * 109.51184 * 300.78070 * 26 25 24 54 54 H 1.08996 * 109.40087 * 60.37647 * 27 26 25 55 55 H 1.09000 * 109.39982 * 180.19311 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5311 1.1866 -0.1178 5 7 3.8784 0.6316 -1.4328 6 6 3.5629 -0.8016 -1.4994 7 6 4.2919 -1.5281 -0.3987 8 1 4.9898 -0.9952 0.2302 9 6 4.0681 -2.8731 -0.1943 10 7 3.2974 -3.5446 -1.0219 11 14 4.8593 -3.7417 1.2579 12 1 3.9058 -3.7720 2.3960 13 1 5.2127 -5.1312 0.8711 14 1 6.0884 -3.0124 1.6612 15 6 5.2920 0.8747 -1.7501 16 6 5.5522 0.5169 -3.1907 17 8 4.6491 0.0999 -3.8846 18 7 6.7887 0.6593 -3.7077 19 6 7.8538 1.3194 -2.9386 20 6 9.0726 0.3933 -2.8849 21 6 9.4734 -0.0076 -4.3066 22 6 8.3160 -0.7704 -4.9623 23 1 8.6119 -1.1022 -5.9575 24 6 7.9721 -1.9841 -4.0953 25 6 6.7826 -2.7308 -4.6999 26 6 5.5715 -1.7961 -4.7494 27 6 5.9038 -0.5882 -5.6271 28 6 7.1043 0.1536 -5.0486 29 1 7.3401 0.9924 -5.7037 30 1 -0.3633 0.5885 0.8425 31 1 -0.3632 0.4354 -0.9309 32 1 -0.3633 -1.0238 0.0883 33 1 1.7566 1.8161 0.9290 34 1 1.6238 1.8752 -0.8450 35 1 3.9058 0.5274 0.6653 36 1 3.9821 2.1729 -0.0091 37 1 2.4889 -0.9431 -1.3789 38 1 3.8755 -1.1979 -2.4655 39 1 3.1402 -4.4909 -0.8783 40 1 5.9201 0.2613 -1.1042 41 1 5.5246 1.9274 -1.5896 42 1 8.1280 2.2559 -3.4240 43 1 7.5027 1.5198 -1.9263 44 1 9.9027 0.9129 -2.4064 45 1 8.8248 -0.5002 -2.3120 46 1 9.6954 0.8872 -4.8882 47 1 10.3558 -0.6464 -4.2696 48 1 8.8329 -2.6512 -4.0478 49 1 7.7173 -1.6504 -3.0894 50 1 7.0325 -3.0564 -5.7097 51 1 6.5472 -3.5992 -4.0846 52 1 4.7180 -2.3279 -5.1699 53 1 5.3307 -1.4585 -3.7413 54 1 6.1392 -0.9274 -6.6358 55 1 5.0444 0.0815 -5.6618 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610391656.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:07 Heat of formation + Delta-G solvation = -60.065349 kcal Electronic energy + Delta-G solvation = -33597.873212 eV Core-core repulsion = 29635.450897 eV Total energy + Delta-G solvation = -3962.422315 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.22777 -39.54383 -38.64446 -37.16473 -36.48301 -34.39795 -33.93102 -31.82395 -30.88714 -30.46098 -29.17507 -27.34640 -26.58730 -25.93656 -24.34711 -24.12450 -23.44999 -21.86890 -21.61981 -20.75939 -18.87724 -18.44197 -17.76773 -17.36506 -17.09225 -16.80476 -16.62476 -16.39782 -15.96542 -15.69697 -15.61310 -15.39201 -15.17065 -14.84988 -14.63698 -14.26129 -14.14042 -13.99074 -13.84545 -13.41117 -13.20602 -13.07569 -12.97494 -12.88735 -12.82720 -12.60500 -12.57609 -12.35288 -12.30111 -12.14460 -12.03782 -11.90477 -11.77972 -11.47933 -11.40863 -11.23923 -11.09286 -10.86700 -10.79334 -10.51795 -10.16637 -9.69806 -9.18478 -8.81545 -7.97209 -6.10523 1.33920 1.35818 1.43557 1.92123 2.21289 2.43721 3.18025 3.29289 3.47214 3.71480 3.81360 3.84447 4.06005 4.16277 4.18085 4.31184 4.37599 4.37959 4.40646 4.46176 4.52555 4.55467 4.58856 4.61102 4.62548 4.66994 4.67817 4.73426 4.77456 4.82950 4.87097 4.90930 4.92959 4.99816 5.04637 5.09691 5.19232 5.24145 5.26527 5.29576 5.40302 5.42918 5.54180 5.58678 5.60900 5.64184 5.80540 5.97913 6.15158 6.23409 6.43238 6.53624 6.62344 6.81781 7.11522 7.55003 7.59370 9.05188 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011282 B = 0.004874 C = 0.004249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.125098 B = 5742.824762 C = 6587.723669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.397 6.397 3 C 0.071 3.929 4 C 0.055 3.945 5 N -0.529 5.529 6 C 0.200 3.800 7 C -0.527 4.527 8 H 0.050 0.950 9 C 0.014 3.986 10 N -0.923 5.923 11 Si 0.939 3.061 12 H -0.280 1.280 13 H -0.290 1.290 14 H -0.264 1.264 15 C 0.043 3.957 16 C 0.508 3.492 17 O -0.529 6.529 18 N -0.609 5.609 19 C 0.105 3.895 20 C -0.139 4.139 21 C -0.106 4.106 22 C -0.092 4.092 23 H 0.095 0.905 24 C -0.105 4.105 25 C -0.119 4.119 26 C -0.121 4.121 27 C -0.103 4.103 28 C 0.158 3.842 29 H 0.085 0.915 30 H 0.058 0.942 31 H 0.039 0.961 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.048 0.952 35 H 0.034 0.966 36 H 0.103 0.897 37 H 0.029 0.971 38 H 0.011 0.989 39 H 0.254 0.746 40 H 0.051 0.949 41 H 0.115 0.885 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.098 0.902 45 H 0.048 0.952 46 H 0.084 0.916 47 H 0.074 0.926 48 H 0.067 0.933 49 H 0.043 0.957 50 H 0.068 0.932 51 H 0.026 0.974 52 H 0.015 0.985 53 H 0.072 0.928 54 H 0.062 0.938 55 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.068 13.179 -4.377 18.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.316 6.316 3 C -0.006 4.006 4 C -0.073 4.073 5 N -0.253 5.253 6 C 0.073 3.927 7 C -0.566 4.566 8 H 0.068 0.932 9 C -0.184 4.184 10 N -0.564 5.564 11 Si 0.765 3.235 12 H -0.206 1.206 13 H -0.216 1.216 14 H -0.189 1.189 15 C -0.088 4.088 16 C 0.297 3.703 17 O -0.406 6.406 18 N -0.345 5.345 19 C -0.017 4.017 20 C -0.177 4.177 21 C -0.143 4.143 22 C -0.111 4.111 23 H 0.114 0.886 24 C -0.143 4.143 25 C -0.156 4.156 26 C -0.158 4.158 27 C -0.140 4.140 28 C 0.055 3.945 29 H 0.103 0.897 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.052 0.948 36 H 0.121 0.879 37 H 0.047 0.953 38 H 0.029 0.971 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.132 0.868 42 H 0.111 0.889 43 H 0.103 0.897 44 H 0.116 0.884 45 H 0.066 0.934 46 H 0.103 0.897 47 H 0.093 0.907 48 H 0.086 0.914 49 H 0.062 0.938 50 H 0.087 0.913 51 H 0.045 0.955 52 H 0.034 0.966 53 H 0.090 0.910 54 H 0.080 0.920 55 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 11.333 12.887 -5.129 17.911 hybrid contribution -0.090 -1.684 1.490 2.251 sum 11.243 11.203 -3.639 16.283 Atomic orbital electron populations 1.22722 0.81665 1.02099 1.00159 1.88293 1.19710 1.28576 1.95056 1.22580 0.93681 0.84480 0.99852 1.22167 0.94716 0.99574 0.90834 1.62291 1.16646 1.18215 1.28174 1.19651 0.96582 0.81953 0.94469 1.21855 1.23904 0.94532 1.16326 0.93196 1.25600 0.96144 0.98466 0.98168 1.70135 1.40101 1.08308 1.37867 0.85845 0.78997 0.77941 0.80676 1.20608 1.21618 1.18869 1.21923 0.91821 1.01994 0.93034 1.20587 0.82422 0.77631 0.89667 1.90682 1.45633 1.43501 1.60813 1.48012 1.09884 1.59241 1.17328 1.21953 0.87053 0.95962 0.96765 1.21992 0.97940 0.99706 0.98064 1.21588 0.96722 1.00593 0.95445 1.21504 0.94891 0.94492 1.00175 0.88634 1.21523 0.96820 0.97004 0.98911 1.21556 0.96287 0.97464 1.00317 1.22021 0.95509 0.95881 1.02433 1.21674 0.98047 0.97001 0.97294 1.20942 0.94524 0.96063 0.82985 0.89740 0.92373 0.94270 0.91293 0.91368 0.93326 0.94801 0.87863 0.95313 0.97132 0.93682 0.93149 0.86765 0.88867 0.89729 0.88399 0.93366 0.89734 0.90689 0.91422 0.93841 0.91312 0.95489 0.96574 0.90992 0.91995 0.91304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.04 11.01 113.37 1.25 2.29 16 2 O -0.40 -17.62 7.73 -148.98 -1.15 -18.77 16 3 C 0.07 2.52 6.24 71.98 0.45 2.97 16 4 C 0.06 2.06 5.34 86.30 0.46 2.52 16 5 N -0.53 -23.21 4.40 -905.37 -3.98 -27.19 16 6 C 0.20 11.07 4.35 85.56 0.37 11.44 16 7 C -0.53 -29.98 7.30 25.60 0.19 -29.79 16 8 H 0.05 2.75 5.99 -2.91 -0.02 2.73 16 9 C 0.01 0.85 5.45 84.65 0.46 1.32 16 10 N -0.92 -58.70 13.30 21.45 0.29 -58.42 16 11 Si 0.94 46.21 29.54 68.60 2.03 48.24 16 12 H -0.28 -13.57 7.11 99.48 0.71 -12.87 16 13 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 14 H -0.26 -12.28 7.11 99.48 0.71 -11.58 16 15 C 0.04 1.60 3.67 85.56 0.31 1.91 16 16 C 0.51 19.26 5.88 87.66 0.52 19.78 16 17 O -0.53 -24.42 8.44 -3.03 -0.03 -24.44 16 18 N -0.61 -17.36 2.34 -797.19 -1.87 -19.23 16 19 C 0.10 2.06 6.36 86.33 0.55 2.61 16 20 C -0.14 -2.48 5.70 30.67 0.17 -2.30 16 21 C -0.11 -1.70 5.44 30.73 0.17 -1.53 16 22 C -0.09 -2.02 2.64 -10.78 -0.03 -2.05 16 23 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 24 C -0.11 -3.09 4.66 30.59 0.14 -2.94 16 25 C -0.12 -4.22 5.92 30.59 0.18 -4.04 16 26 C -0.12 -5.07 4.82 30.60 0.15 -4.93 16 27 C -0.10 -3.44 4.87 30.42 0.15 -3.29 16 28 C 0.16 4.14 2.88 44.66 0.13 4.27 16 29 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 30 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.03 1.45 6.05 -2.38 -0.01 1.43 16 36 H 0.10 2.91 7.78 -2.39 -0.02 2.89 16 37 H 0.03 1.80 5.52 -2.39 -0.01 1.79 16 38 H 0.01 0.67 4.78 -2.38 -0.01 0.66 16 39 H 0.25 15.47 8.31 -92.71 -0.77 14.70 16 40 H 0.05 2.01 6.52 -2.39 -0.02 2.00 16 41 H 0.11 3.19 7.34 -2.39 -0.02 3.17 16 42 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.08 1.65 5.96 -2.39 -0.01 1.64 16 44 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.05 1.14 6.17 -2.39 -0.01 1.13 16 46 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 49 H 0.04 1.52 5.72 -2.39 -0.01 1.50 16 50 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 51 H 0.03 1.08 8.14 -2.39 -0.02 1.07 16 52 H 0.02 0.72 8.14 -2.39 -0.02 0.71 16 53 H 0.07 3.63 3.34 -32.32 -0.11 3.53 16 54 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 55 H 0.07 2.68 6.08 -2.39 -0.01 2.66 16 Total: -1.00 -77.05 389.43 1.67 -75.37 By element: Atomic # 1 Polarization: 25.44 SS G_CDS: 0.77 Total: 26.21 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: 5.62 Total: -1.77 kcal Atomic # 7 Polarization: -99.27 SS G_CDS: -5.56 Total: -104.83 kcal Atomic # 8 Polarization: -42.04 SS G_CDS: -1.18 Total: -43.22 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -77.05 1.67 -75.37 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610391656.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.308 kcal (2) G-P(sol) polarization free energy of solvation -77.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds