Wall clock time and date at job start Tue Mar 31 2020 22:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42899 * 114.00376 * 2 1 4 4 C 1.53005 * 109.47347 * 180.81816 * 3 2 1 5 5 N 1.46897 * 109.47021 * 67.95338 * 4 3 2 6 6 C 1.46900 * 111.00103 * 285.02601 * 5 4 3 7 7 C 1.50703 * 109.46984 * 173.26596 * 6 5 4 8 8 H 1.08001 * 120.00011 * 354.61688 * 7 6 5 9 9 C 1.37873 * 119.99780 * 174.62150 * 7 6 5 10 10 N 1.31517 * 120.00180 * 354.54075 * 9 7 6 11 11 Si 1.86803 * 120.00020 * 174.53613 * 9 7 6 12 12 H 1.48507 * 109.46912 * 94.85472 * 11 9 7 13 13 H 1.48494 * 109.47335 * 214.85329 * 11 9 7 14 14 H 1.48499 * 109.46874 * 334.85835 * 11 9 7 15 15 C 1.46905 * 110.99890 * 161.06596 * 5 4 3 16 16 C 1.50696 * 109.47156 * 293.95425 * 15 5 4 17 17 O 1.21277 * 120.00376 * 0.02562 * 16 15 5 18 18 N 1.34782 * 119.99506 * 179.97438 * 16 15 5 19 19 C 1.47100 * 120.91153 * 0.02562 * 18 16 15 20 20 C 1.53107 * 109.17699 * 126.60934 * 19 18 16 21 21 C 1.53336 * 109.61472 * 53.80518 * 20 19 18 22 22 C 1.52777 * 109.21181 * 299.33653 * 21 20 19 23 23 H 1.08998 * 109.39223 * 302.30584 * 22 21 20 24 24 C 1.52804 * 110.70375 * 182.01417 * 22 21 20 25 25 C 1.53142 * 109.02514 * 178.95650 * 24 22 21 26 26 C 1.52914 * 109.86796 * 59.55803 * 25 24 22 27 27 C 1.53157 * 109.85322 * 300.94139 * 26 25 24 28 28 C 1.46685 * 120.90623 * 180.02562 * 18 16 15 29 29 H 1.08992 * 109.50859 * 115.06090 * 28 18 16 30 30 H 1.09006 * 109.47535 * 183.67281 * 1 2 3 31 31 H 1.09009 * 109.47161 * 303.66929 * 1 2 3 32 32 H 1.08995 * 109.47282 * 63.66953 * 1 2 3 33 33 H 1.09004 * 109.47288 * 60.81607 * 3 2 1 34 34 H 1.09004 * 109.46986 * 300.81906 * 3 2 1 35 35 H 1.08996 * 109.47028 * 307.95066 * 4 3 2 36 36 H 1.09004 * 109.46843 * 187.95196 * 4 3 2 37 37 H 1.08996 * 109.46670 * 293.26095 * 6 5 4 38 38 H 1.08991 * 109.47145 * 53.26183 * 6 5 4 39 39 H 0.96997 * 120.00141 * 180.02562 * 10 9 7 40 40 H 1.09003 * 109.46992 * 173.95231 * 15 5 4 41 41 H 1.09001 * 109.46574 * 53.95656 * 15 5 4 42 42 H 1.08999 * 109.53061 * 246.54098 * 19 18 16 43 43 H 1.08996 * 109.53113 * 6.68626 * 19 18 16 44 44 H 1.09004 * 109.43745 * 173.93912 * 20 19 18 45 45 H 1.08998 * 109.43653 * 293.79941 * 20 19 18 46 46 H 1.09004 * 109.49893 * 179.41979 * 21 20 19 47 47 H 1.08999 * 109.55268 * 59.29474 * 21 20 19 48 48 H 1.09007 * 109.54561 * 298.82331 * 24 22 21 49 49 H 1.09003 * 109.54403 * 59.00134 * 24 22 21 50 50 H 1.09009 * 109.40757 * 179.67422 * 25 24 22 51 51 H 1.08999 * 109.40733 * 299.51454 * 25 24 22 52 52 H 1.08992 * 109.40836 * 61.05556 * 26 25 24 53 53 H 1.09005 * 109.40536 * 180.90623 * 26 25 24 54 54 H 1.09001 * 109.54391 * 299.71479 * 27 26 25 55 55 H 1.08996 * 109.54767 * 179.43764 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0206 5 7 3.9656 0.6352 -1.3132 6 6 3.6902 -0.8057 -1.3907 7 6 3.9897 -1.3002 -2.7825 8 1 4.2650 -0.5996 -3.5569 9 6 3.9123 -2.6470 -3.0670 10 7 3.6827 -3.5108 -2.1023 11 14 4.1332 -3.2449 -4.8230 12 1 5.5488 -3.6394 -5.0370 13 1 3.2515 -4.4156 -5.0619 14 1 3.7752 -2.1548 -5.7657 15 6 5.3874 0.9134 -1.5565 16 6 5.5891 2.3985 -1.7132 17 8 4.6418 3.1513 -1.6300 18 7 6.8224 2.8903 -1.9448 19 6 7.9854 1.9957 -2.0489 20 6 8.7182 2.2744 -3.3641 21 6 9.0531 3.7676 -3.4602 22 6 7.7573 4.5763 -3.4323 23 1 7.1138 4.2573 -4.2522 24 6 8.0490 6.0693 -3.5765 25 6 6.7254 6.8395 -3.5698 26 6 5.9797 6.5801 -2.2602 27 6 5.7094 5.0807 -2.1039 28 6 7.0416 4.3324 -2.1000 29 1 7.6625 4.6963 -1.2816 30 1 -0.3634 -1.0256 0.0658 31 1 -0.3634 0.5698 0.8553 32 1 -0.3633 0.4558 -0.9210 33 1 1.7003 1.8412 0.8972 34 1 1.6770 1.8515 -0.8826 35 1 3.8581 0.5212 0.7817 36 1 3.9798 2.1697 0.1215 37 1 4.3184 -1.3347 -0.6742 38 1 2.6411 -0.9881 -1.1583 39 1 3.6286 -4.4584 -2.3024 40 1 5.7065 0.4053 -2.4665 41 1 5.9773 0.5535 -0.7135 42 1 8.6592 2.1750 -1.2112 43 1 7.6502 0.9587 -2.0314 44 1 9.6388 1.6917 -3.3969 45 1 8.0806 1.9913 -4.2016 46 1 9.5838 3.9622 -4.3923 47 1 9.6807 4.0558 -2.6169 48 1 8.6687 6.4019 -2.7436 49 1 8.5726 6.2495 -4.5153 50 1 6.9267 7.9065 -3.6666 51 1 6.1102 6.5097 -4.4069 52 1 6.5854 6.9281 -1.4236 53 1 5.0321 7.1186 -2.2702 54 1 5.0978 4.7317 -2.9359 55 1 5.1868 4.9004 -1.1645 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610391657.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:11 Heat of formation + Delta-G solvation = -94.909762 kcal Electronic energy + Delta-G solvation = -32059.697666 eV Core-core repulsion = 28095.764384 eV Total energy + Delta-G solvation = -3963.933282 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.82862 -39.72068 -38.78174 -37.19340 -36.89453 -34.62166 -34.05575 -31.75198 -31.12482 -30.80787 -29.30165 -27.51455 -26.68196 -25.97465 -24.11745 -23.71453 -23.60100 -22.06326 -21.35097 -20.86627 -19.82918 -18.51468 -17.75052 -17.37071 -17.24451 -16.87376 -16.71375 -16.44947 -16.02896 -15.78451 -15.50837 -15.26550 -15.18241 -15.08161 -14.82184 -14.40225 -14.18590 -13.98884 -13.81289 -13.56229 -13.49801 -13.31094 -13.03638 -12.89932 -12.72687 -12.71835 -12.54967 -12.41046 -12.35417 -12.25762 -12.10219 -12.03466 -11.85568 -11.83521 -11.68192 -11.44694 -11.34351 -11.10542 -10.84015 -10.62264 -10.33495 -9.87315 -9.43860 -8.94136 -8.13708 -6.21917 1.39429 1.42321 1.53960 1.69930 2.00278 2.42716 3.01285 3.19737 3.28968 3.55808 3.73263 3.78646 3.94358 4.06453 4.19604 4.19831 4.23658 4.25645 4.32519 4.35616 4.38441 4.42389 4.49219 4.54899 4.58258 4.59440 4.62721 4.64842 4.66798 4.78637 4.83032 4.86257 4.89863 4.95784 4.97403 5.01476 5.09707 5.15818 5.18650 5.26115 5.31912 5.33826 5.35429 5.43993 5.51370 5.58449 5.59755 5.69428 5.80777 6.17144 6.26903 6.42598 6.52495 6.67525 6.94634 7.33578 7.45495 8.96990 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010392 B = 0.003848 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2693.761780 B = 7275.269757 C = 9123.408102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.408 6.408 3 C 0.078 3.922 4 C 0.061 3.939 5 N -0.527 5.527 6 C 0.204 3.796 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.009 3.991 10 N -0.929 5.929 11 Si 0.960 3.040 12 H -0.269 1.269 13 H -0.282 1.282 14 H -0.271 1.271 15 C 0.048 3.952 16 C 0.519 3.481 17 O -0.544 6.544 18 N -0.611 5.611 19 C 0.099 3.901 20 C -0.133 4.133 21 C -0.107 4.107 22 C -0.097 4.097 23 H 0.047 0.953 24 C -0.103 4.103 25 C -0.120 4.120 26 C -0.121 4.121 27 C -0.098 4.098 28 C 0.152 3.848 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.038 0.962 33 H 0.070 0.930 34 H 0.044 0.956 35 H 0.019 0.981 36 H 0.094 0.906 37 H -0.043 1.043 38 H 0.046 0.954 39 H 0.263 0.737 40 H 0.096 0.904 41 H 0.053 0.947 42 H 0.090 0.910 43 H 0.077 0.923 44 H 0.097 0.903 45 H 0.048 0.952 46 H 0.078 0.922 47 H 0.080 0.920 48 H 0.078 0.922 49 H 0.076 0.924 50 H 0.078 0.922 51 H 0.046 0.954 52 H 0.072 0.928 53 H 0.059 0.941 54 H 0.038 0.962 55 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.172 18.996 0.799 22.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.328 6.328 3 C 0.001 3.999 4 C -0.068 4.068 5 N -0.252 5.252 6 C 0.078 3.922 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.189 4.189 10 N -0.569 5.569 11 Si 0.785 3.215 12 H -0.194 1.194 13 H -0.208 1.208 14 H -0.196 1.196 15 C -0.083 4.083 16 C 0.307 3.693 17 O -0.422 6.422 18 N -0.345 5.345 19 C -0.023 4.023 20 C -0.171 4.171 21 C -0.144 4.144 22 C -0.117 4.117 23 H 0.066 0.934 24 C -0.141 4.141 25 C -0.157 4.157 26 C -0.159 4.159 27 C -0.136 4.136 28 C 0.050 3.950 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.088 0.912 34 H 0.062 0.938 35 H 0.037 0.963 36 H 0.112 0.888 37 H -0.025 1.025 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.114 0.886 41 H 0.070 0.930 42 H 0.108 0.892 43 H 0.096 0.904 44 H 0.116 0.884 45 H 0.067 0.933 46 H 0.096 0.904 47 H 0.099 0.901 48 H 0.096 0.904 49 H 0.095 0.905 50 H 0.096 0.904 51 H 0.065 0.935 52 H 0.090 0.910 53 H 0.077 0.923 54 H 0.057 0.943 55 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.471 19.262 0.520 21.931 hybrid contribution -0.129 -1.267 -0.201 1.289 sum 10.342 17.995 0.319 20.758 Atomic orbital electron populations 1.22805 0.80638 1.02892 1.00403 1.88060 1.20811 1.28712 1.95207 1.22464 0.93081 0.84311 1.00031 1.22167 0.94976 0.99698 0.89909 1.61792 1.15692 1.16911 1.30799 1.19708 0.96836 0.80959 0.94650 1.21426 1.46235 0.92160 0.96259 0.92792 1.25773 0.95177 0.96819 1.01176 1.70114 1.50814 1.02352 1.33627 0.85521 0.78319 0.77744 0.79925 1.19444 1.20779 1.19578 1.21870 0.91127 0.92725 1.02548 1.20687 0.82563 0.90352 0.75649 1.90639 1.41576 1.59035 1.50934 1.48241 1.07015 1.08003 1.71266 1.21964 0.87076 0.93877 0.99384 1.21943 1.00955 0.97937 0.96307 1.21544 0.96156 0.93293 1.03425 1.21506 0.97161 0.96893 0.96099 0.93429 1.21498 0.97207 0.92301 1.03094 1.21558 0.96466 1.00706 0.96981 1.21678 1.00476 0.95242 0.98500 1.21798 0.95185 0.94361 1.02247 1.21323 0.97200 0.78643 0.97860 0.90029 0.89952 0.92170 0.94335 0.91184 0.93768 0.96301 0.88777 1.02500 0.93600 0.92859 0.88568 0.92964 0.89188 0.90438 0.88440 0.93287 0.90362 0.90134 0.90361 0.90493 0.90384 0.93495 0.90959 0.92252 0.94327 0.91824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 11.01 113.37 1.25 2.18 16 2 O -0.41 -17.51 7.80 -148.98 -1.16 -18.67 16 3 C 0.08 2.98 6.23 71.98 0.45 3.43 16 4 C 0.06 2.49 5.04 86.31 0.43 2.93 16 5 N -0.53 -24.86 4.20 -905.36 -3.80 -28.66 16 6 C 0.20 11.41 4.50 85.56 0.38 11.80 16 7 C -0.52 -30.44 8.21 25.60 0.21 -30.23 16 8 H 0.05 3.13 7.18 -2.91 -0.02 3.11 16 9 C 0.01 0.51 5.45 84.65 0.46 0.97 16 10 N -0.93 -56.83 13.28 21.45 0.28 -56.54 16 11 Si 0.96 45.02 29.54 68.60 2.03 47.04 16 12 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 13 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 14 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 15 C 0.05 1.97 3.65 85.55 0.31 2.28 16 16 C 0.52 18.64 7.16 87.66 0.63 19.27 16 17 O -0.54 -21.78 10.14 -3.02 -0.03 -21.81 16 18 N -0.61 -16.85 2.97 -795.73 -2.36 -19.21 16 19 C 0.10 2.17 6.34 86.30 0.55 2.71 16 20 C -0.13 -2.42 6.08 30.74 0.19 -2.24 16 21 C -0.11 -1.60 5.27 30.63 0.16 -1.44 16 22 C -0.10 -1.85 2.01 -10.87 -0.02 -1.88 16 23 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 24 C -0.10 -1.49 5.30 30.58 0.16 -1.32 16 25 C -0.12 -1.98 5.91 30.61 0.18 -1.80 16 26 C -0.12 -2.38 5.91 30.62 0.18 -2.19 16 27 C -0.10 -2.64 3.66 30.58 0.11 -2.53 16 28 C 0.15 3.53 2.65 44.95 0.12 3.65 16 29 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.08 2.59 8.14 -2.38 -0.02 2.57 16 31 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 32 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 34 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 35 H 0.02 0.80 8.01 -2.39 -0.02 0.78 16 36 H 0.09 3.62 5.84 -2.39 -0.01 3.61 16 37 H -0.04 -2.62 8.12 -2.39 -0.02 -2.63 16 38 H 0.05 2.79 5.18 -2.39 -0.01 2.78 16 39 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 40 H 0.10 4.19 6.07 -2.39 -0.01 4.18 16 41 H 0.05 2.01 7.94 -2.39 -0.02 1.99 16 42 H 0.09 1.54 8.14 -2.39 -0.02 1.53 16 43 H 0.08 1.92 5.98 -2.39 -0.01 1.91 16 44 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 45 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 47 H 0.08 0.97 8.14 -2.39 -0.02 0.96 16 48 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 49 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 50 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 51 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 52 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 53 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 54 H 0.04 1.29 7.24 -2.39 -0.02 1.28 16 55 H 0.06 2.02 6.40 -2.39 -0.02 2.00 16 Total: -1.00 -71.87 406.45 1.55 -70.32 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: 0.83 Total: 21.94 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: 5.76 Total: 5.58 kcal Atomic # 7 Polarization: -98.53 SS G_CDS: -5.88 Total: -104.41 kcal Atomic # 8 Polarization: -39.29 SS G_CDS: -1.19 Total: -40.48 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -71.87 1.55 -70.32 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610391657.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.585 kcal (2) G-P(sol) polarization free energy of solvation -71.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds