Wall clock time and date at job start Tue Mar 31 2020 22:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42898 * 113.99712 * 2 1 4 4 C 1.53007 * 109.46983 * 175.15907 * 3 2 1 5 5 N 1.46507 * 109.47116 * 65.79939 * 4 3 2 6 6 C 1.46497 * 119.99830 * 84.68988 * 5 4 3 7 7 C 1.50708 * 109.46951 * 90.00322 * 6 5 4 8 8 H 1.08005 * 119.99702 * 0.27287 * 7 6 5 9 9 C 1.37872 * 120.00167 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99817 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 120.00074 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.47130 * 90.00097 * 11 9 7 13 13 H 1.48504 * 109.47425 * 210.00344 * 11 9 7 14 14 H 1.48505 * 109.47180 * 330.00241 * 11 9 7 15 15 C 1.34773 * 119.99841 * 264.69709 * 5 4 3 16 16 O 1.21275 * 120.00070 * 5.03614 * 15 5 4 17 17 C 1.50698 * 119.99811 * 185.03967 * 15 5 4 18 18 H 1.09001 * 110.29093 * 324.55654 * 17 15 5 19 19 C 1.54261 * 110.32360 * 86.68608 * 17 15 5 20 20 C 1.54380 * 105.06144 * 118.89989 * 19 17 15 21 21 N 1.48559 * 104.59477 * 23.85011 * 20 19 17 22 22 C 1.46901 * 110.99772 * 200.96686 * 21 20 19 23 23 C 1.53006 * 109.46912 * 301.17707 * 22 21 20 24 24 C 1.53001 * 109.47031 * 179.97438 * 23 22 21 25 25 C 1.53001 * 109.47085 * 60.00607 * 24 23 22 26 26 C 1.53012 * 109.46944 * 299.99784 * 25 24 23 27 27 C 1.52999 * 109.46857 * 59.99872 * 26 25 24 28 28 C 1.48566 * 104.22342 * 320.51627 * 21 20 19 29 29 H 1.08999 * 109.47468 * 299.99545 * 1 2 3 30 30 H 1.09007 * 109.47460 * 60.00152 * 1 2 3 31 31 H 1.09005 * 109.47464 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47577 * 55.16219 * 3 2 1 33 33 H 1.08998 * 109.47605 * 295.15488 * 3 2 1 34 34 H 1.09000 * 109.46956 * 305.80130 * 4 3 2 35 35 H 1.08997 * 109.47175 * 185.79827 * 4 3 2 36 36 H 1.08995 * 109.47639 * 330.00661 * 6 5 4 37 37 H 1.09003 * 109.47147 * 209.99845 * 6 5 4 38 38 H 0.97006 * 119.99639 * 179.97438 * 10 9 7 39 39 H 1.09005 * 110.32467 * 237.78765 * 19 17 15 40 40 H 1.08992 * 110.32563 * 359.89571 * 19 17 15 41 41 H 1.08998 * 110.41533 * 142.63460 * 20 19 17 42 42 H 1.09000 * 110.40634 * 264.95113 * 20 19 17 43 43 H 1.08999 * 109.47496 * 61.17645 * 22 21 20 44 44 H 1.08994 * 109.47403 * 300.00448 * 23 22 21 45 45 H 1.08998 * 109.46866 * 60.00644 * 23 22 21 46 46 H 1.08994 * 109.47426 * 300.00475 * 24 23 22 47 47 H 1.09000 * 109.46956 * 180.02562 * 24 23 22 48 48 H 1.08991 * 109.47419 * 179.97438 * 25 24 23 49 49 H 1.08999 * 109.47467 * 59.99386 * 25 24 23 50 50 H 1.08999 * 109.46714 * 300.00063 * 26 25 24 51 51 H 1.08998 * 109.47120 * 179.97438 * 26 25 24 52 52 H 1.09000 * 109.46761 * 180.02562 * 27 26 25 53 53 H 1.08999 * 109.47302 * 60.00552 * 27 26 25 54 54 H 1.08998 * 110.41653 * 280.70820 * 28 21 20 55 55 H 1.08999 * 110.40822 * 158.25637 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5307 1.1868 0.1217 5 7 4.0678 0.5415 -1.0789 6 6 4.3600 1.3406 -2.2715 7 6 5.7818 1.8361 -2.2082 8 1 6.4068 1.5775 -1.3661 9 6 6.2864 2.6152 -3.2277 10 7 7.5274 3.0471 -3.1726 11 14 5.2079 3.0560 -4.6877 12 1 4.4901 4.3255 -4.4075 13 1 6.0545 3.2224 -5.8963 14 1 4.2214 1.9706 -4.9201 15 6 4.2931 -0.7873 -1.0862 16 8 3.9667 -1.4629 -0.1334 17 6 4.9506 -1.4335 -2.2783 18 1 4.6323 -0.9424 -3.1979 19 6 6.4859 -1.3722 -2.1419 20 6 6.9458 -2.8458 -2.1197 21 7 5.8586 -3.5877 -2.8086 22 6 5.8835 -5.0119 -2.4493 23 6 7.2382 -5.6109 -2.8328 24 6 7.2644 -7.0941 -2.4580 25 6 6.1513 -7.8292 -3.2074 26 6 4.7965 -7.2301 -2.8241 27 6 4.7704 -5.7470 -3.1987 28 6 4.6119 -2.9389 -2.3268 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6216 1.8762 0.8434 33 1 1.7588 1.8151 -0.9302 34 1 3.7794 0.5882 0.9981 35 1 3.9656 2.1809 0.2253 36 1 3.6803 2.1916 -2.3141 37 1 4.2288 0.7257 -3.1619 38 1 7.8825 3.5950 -3.8901 39 1 6.9214 -0.8527 -2.9955 40 1 6.7640 -0.8732 -1.2137 41 1 7.8853 -2.9591 -2.6606 42 1 7.0550 -3.1944 -1.0928 43 1 5.7299 -5.1185 -1.3755 44 1 7.3918 -5.5043 -3.9066 45 1 8.0311 -5.0876 -2.2985 46 1 7.1110 -7.2003 -1.3842 47 1 8.2296 -7.5207 -2.7308 48 1 6.1702 -8.8858 -2.9409 49 1 6.3046 -7.7229 -4.2814 50 1 4.6432 -7.3364 -1.7501 51 1 4.0036 -7.7535 -3.3583 52 1 3.8055 -5.3201 -2.9252 53 1 4.9237 -5.6407 -4.2726 54 1 4.3537 -3.3028 -1.3323 55 1 3.7942 -3.1223 -3.0239 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610505580.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:15 Heat of formation + Delta-G solvation = -106.959828 kcal Electronic energy + Delta-G solvation = -31683.358339 eV Core-core repulsion = 27718.902527 eV Total energy + Delta-G solvation = -3964.455812 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.44763 -40.11646 -38.74375 -37.76492 -36.71422 -34.52352 -33.41546 -31.87009 -31.49054 -29.88541 -29.41592 -28.97332 -27.15971 -24.69706 -24.52617 -23.68927 -23.24853 -21.83102 -21.64404 -20.64888 -19.58191 -18.96404 -18.27698 -17.67126 -17.29138 -17.10485 -16.58155 -16.39873 -16.06019 -15.84186 -15.43266 -15.19454 -15.13298 -14.89833 -14.79602 -14.54998 -14.43220 -13.98946 -13.81636 -13.63010 -13.50331 -13.16781 -13.13494 -13.05332 -12.80314 -12.63181 -12.60020 -12.43249 -12.28684 -12.24331 -12.08502 -12.03898 -11.97943 -11.93139 -11.66808 -11.54959 -11.41579 -11.09583 -10.84436 -10.77707 -10.61343 -10.45581 -9.47839 -9.38742 -8.23918 -6.29099 1.40577 1.44229 1.51810 1.80019 2.24736 2.37743 2.92200 2.98749 3.10015 3.60121 3.63992 3.78280 3.88353 3.96976 4.10883 4.14411 4.16757 4.23775 4.32647 4.34474 4.36311 4.40337 4.48605 4.52905 4.53555 4.54176 4.60318 4.63552 4.64497 4.70570 4.73825 4.75646 4.81283 4.82801 4.85471 4.94571 4.97712 5.01591 5.10854 5.15158 5.18848 5.25475 5.29089 5.32220 5.35488 5.38254 5.49155 5.56977 5.73078 5.83359 6.13285 6.25172 6.33158 6.65909 6.76797 7.31204 7.42942 8.91774 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009584 B = 0.003785 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2920.685727 B = 7395.659040 C = 9382.203002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.406 6.406 3 C 0.051 3.949 4 C 0.114 3.886 5 N -0.592 5.592 6 C 0.217 3.783 7 C -0.525 4.525 8 H 0.036 0.964 9 C 0.026 3.974 10 N -0.939 5.939 11 Si 0.931 3.069 12 H -0.265 1.265 13 H -0.287 1.287 14 H -0.243 1.243 15 C 0.525 3.475 16 O -0.578 6.578 17 C -0.105 4.105 18 H 0.097 0.903 19 C -0.085 4.085 20 C 0.043 3.957 21 N -0.505 5.505 22 C 0.075 3.925 23 C -0.109 4.109 24 C -0.115 4.115 25 C -0.116 4.116 26 C -0.115 4.115 27 C -0.107 4.107 28 C 0.058 3.942 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.266 0.734 39 H 0.072 0.928 40 H 0.044 0.956 41 H 0.094 0.906 42 H 0.037 0.963 43 H 0.027 0.973 44 H 0.069 0.931 45 H 0.056 0.944 46 H 0.057 0.943 47 H 0.075 0.925 48 H 0.074 0.926 49 H 0.065 0.935 50 H 0.056 0.944 51 H 0.075 0.925 52 H 0.053 0.947 53 H 0.070 0.930 54 H 0.046 0.954 55 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.668 -14.840 -0.267 17.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.326 6.326 3 C -0.026 4.026 4 C -0.009 4.009 5 N -0.322 5.322 6 C 0.095 3.905 7 C -0.564 4.564 8 H 0.054 0.946 9 C -0.173 4.173 10 N -0.579 5.579 11 Si 0.755 3.245 12 H -0.190 1.190 13 H -0.213 1.213 14 H -0.166 1.166 15 C 0.314 3.686 16 O -0.459 6.459 17 C -0.127 4.127 18 H 0.115 0.885 19 C -0.124 4.124 20 C -0.085 4.085 21 N -0.228 5.228 22 C -0.034 4.034 23 C -0.147 4.147 24 C -0.153 4.153 25 C -0.154 4.154 26 C -0.153 4.153 27 C -0.145 4.145 28 C -0.070 4.070 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.116 0.884 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.063 0.937 41 H 0.112 0.888 42 H 0.055 0.945 43 H 0.045 0.955 44 H 0.088 0.912 45 H 0.075 0.925 46 H 0.076 0.924 47 H 0.094 0.906 48 H 0.092 0.908 49 H 0.084 0.916 50 H 0.075 0.925 51 H 0.093 0.907 52 H 0.071 0.929 53 H 0.088 0.912 54 H 0.064 0.936 55 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.558 -15.212 -0.443 17.459 hybrid contribution -0.151 1.216 0.461 1.309 sum -8.708 -13.996 0.017 16.484 Atomic orbital electron populations 1.22864 0.80219 1.03148 1.00669 1.88060 1.20829 1.28186 1.95481 1.22981 0.93266 0.84996 1.01379 1.21510 0.92361 0.98915 0.88098 1.47825 1.62199 1.07091 1.15075 1.19657 0.95223 0.91555 0.84067 1.21395 0.96777 1.31606 1.06604 0.94583 1.25621 0.95897 0.95152 1.00670 1.70039 1.16521 1.36688 1.34631 0.85962 0.79513 0.80116 0.78956 1.19029 1.21336 1.16621 1.20522 0.77272 0.82141 0.88654 1.90565 1.53897 1.63084 1.38353 1.21938 0.96903 0.96650 0.97174 0.88466 1.21906 0.92486 0.96275 1.01720 1.23047 0.96282 0.92260 0.96882 1.65498 1.01851 1.02570 1.52925 1.21904 0.97482 0.87138 0.96853 1.21573 0.94978 0.96149 1.01995 1.21517 0.99606 0.93997 1.00208 1.21535 0.93855 0.99517 1.00465 1.21519 0.98236 0.94365 1.01202 1.21523 0.96915 0.95424 1.00609 1.22894 0.93817 0.90958 0.99358 0.92767 0.93579 0.89538 0.90149 0.92812 0.91266 0.88370 0.93968 0.94064 0.92471 0.90957 0.93746 0.88796 0.94512 0.95478 0.91186 0.92485 0.92437 0.90649 0.90783 0.91605 0.92503 0.90665 0.92857 0.91168 0.93585 0.89319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 11.01 113.37 1.25 1.88 16 2 O -0.41 -13.56 9.95 -148.73 -1.48 -15.04 16 3 C 0.05 1.52 6.28 71.98 0.45 1.98 16 4 C 0.11 4.11 5.83 86.38 0.50 4.61 16 5 N -0.59 -24.42 2.42 -826.14 -2.00 -26.42 16 6 C 0.22 9.29 4.02 85.64 0.34 9.63 16 7 C -0.53 -27.03 9.33 25.60 0.24 -26.79 16 8 H 0.04 2.13 8.06 -2.91 -0.02 2.11 16 9 C 0.03 1.35 5.47 84.65 0.46 1.82 16 10 N -0.94 -54.47 13.96 21.45 0.30 -54.17 16 11 Si 0.93 39.62 27.47 68.60 1.88 41.50 16 12 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 13 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 14 H -0.24 -9.43 6.54 99.48 0.65 -8.78 16 15 C 0.53 22.32 6.42 87.66 0.56 22.88 16 16 O -0.58 -26.82 14.61 -2.76 -0.04 -26.86 16 17 C -0.10 -4.02 2.79 -10.64 -0.03 -4.05 16 18 H 0.10 3.74 6.07 -2.39 -0.01 3.72 16 19 C -0.09 -3.32 6.02 31.49 0.19 -3.13 16 20 C 0.04 1.40 5.29 86.45 0.46 1.85 16 21 N -0.50 -15.34 5.20 -856.31 -4.45 -19.80 16 22 C 0.07 1.90 1.72 44.92 0.08 1.98 16 23 C -0.11 -2.36 5.03 30.60 0.15 -2.21 16 24 C -0.12 -1.98 5.92 30.60 0.18 -1.79 16 25 C -0.12 -1.78 5.92 30.60 0.18 -1.60 16 26 C -0.12 -2.00 5.92 30.60 0.18 -1.82 16 27 C -0.11 -2.35 5.19 30.59 0.16 -2.19 16 28 C 0.06 1.95 5.05 86.45 0.44 2.39 16 29 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 32 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.05 1.54 8.13 -2.39 -0.02 1.52 16 34 H 0.07 2.67 7.34 -2.39 -0.02 2.65 16 35 H 0.10 3.35 8.11 -2.39 -0.02 3.33 16 36 H 0.04 1.70 7.49 -2.39 -0.02 1.68 16 37 H 0.04 1.74 5.02 -2.39 -0.01 1.73 16 38 H 0.27 14.56 8.31 -92.70 -0.77 13.79 16 39 H 0.07 3.01 8.14 -2.38 -0.02 2.99 16 40 H 0.04 1.94 7.70 -2.39 -0.02 1.92 16 41 H 0.09 2.76 7.67 -2.39 -0.02 2.74 16 42 H 0.04 1.21 7.99 -2.39 -0.02 1.19 16 43 H 0.03 0.77 7.97 -2.39 -0.02 0.75 16 44 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.06 1.28 6.91 -2.39 -0.02 1.27 16 46 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 50 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 51 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 52 H 0.05 1.25 7.10 -2.39 -0.02 1.24 16 53 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 54 H 0.05 1.72 6.55 -2.39 -0.02 1.71 16 55 H 0.09 2.73 7.71 -2.39 -0.02 2.72 16 Total: -1.00 -64.90 415.56 0.78 -64.11 By element: Atomic # 1 Polarization: 30.46 SS G_CDS: 0.78 Total: 31.23 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: 5.80 Total: 5.44 kcal Atomic # 7 Polarization: -94.23 SS G_CDS: -6.15 Total: -100.39 kcal Atomic # 8 Polarization: -40.38 SS G_CDS: -1.52 Total: -41.90 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 1.88 Total: 41.50 kcal Total: -64.90 0.78 -64.11 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610505580.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.847 kcal (2) G-P(sol) polarization free energy of solvation -64.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds