Wall clock time and date at job start Tue Mar 31 2020 22:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00005 * 2 1 4 4 C 1.53006 * 109.46924 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47163 * 64.99968 * 4 3 2 6 6 C 1.46504 * 119.99776 * 270.00253 * 5 4 3 7 7 C 1.50704 * 109.46604 * 269.99971 * 6 5 4 8 8 H 1.07998 * 120.00215 * 359.97438 * 7 6 5 9 9 C 1.37885 * 119.99686 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99988 * 359.97438 * 9 7 6 11 11 Si 1.86791 * 119.99812 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47418 * 59.99642 * 11 9 7 13 13 H 1.48507 * 109.47218 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47318 * 299.99573 * 11 9 7 15 15 C 1.34774 * 120.00327 * 90.00131 * 5 4 3 16 16 O 1.21286 * 119.99388 * 359.97438 * 15 5 4 17 17 C 1.50693 * 120.00484 * 179.72609 * 15 5 4 18 18 H 1.09002 * 110.27199 * 58.18381 * 17 15 5 19 19 C 1.54600 * 110.30629 * 295.99337 * 17 15 5 20 20 C 1.54941 * 102.91699 * 219.12569 * 19 17 15 21 21 N 1.48532 * 103.22893 * 37.41419 * 20 19 17 22 22 C 1.46903 * 110.99670 * 200.28082 * 21 20 19 23 23 C 1.52998 * 109.47126 * 299.05424 * 22 21 20 24 24 C 1.52995 * 109.47372 * 180.02562 * 23 22 21 25 25 C 1.53007 * 109.46996 * 60.00075 * 24 23 22 26 26 C 1.52998 * 109.46998 * 300.00153 * 25 24 23 27 27 C 1.52997 * 109.47319 * 59.99687 * 26 25 24 28 28 C 1.47905 * 105.81847 * 320.79154 * 21 20 19 29 29 H 1.08997 * 109.47567 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46681 * 300.00291 * 1 2 3 31 31 H 1.09006 * 109.46957 * 59.99650 * 1 2 3 32 32 H 1.08994 * 109.47089 * 60.00601 * 3 2 1 33 33 H 1.08999 * 109.46939 * 299.99614 * 3 2 1 34 34 H 1.09004 * 109.46789 * 304.99829 * 4 3 2 35 35 H 1.08999 * 109.47183 * 185.00254 * 4 3 2 36 36 H 1.08992 * 109.47400 * 29.99581 * 6 5 4 37 37 H 1.09001 * 109.47077 * 150.00427 * 6 5 4 38 38 H 0.96998 * 120.00161 * 180.02562 * 10 9 7 39 39 H 1.09004 * 110.72282 * 337.47835 * 19 17 15 40 40 H 1.08998 * 110.72638 * 100.76914 * 19 17 15 41 41 H 1.08994 * 110.66556 * 278.97460 * 20 19 17 42 42 H 1.09007 * 110.80927 * 155.91621 * 20 19 17 43 43 H 1.08996 * 109.47493 * 59.05568 * 22 21 20 44 44 H 1.09003 * 109.47424 * 300.00587 * 23 22 21 45 45 H 1.08996 * 109.47199 * 60.00156 * 23 22 21 46 46 H 1.08996 * 109.47245 * 300.00142 * 24 23 22 47 47 H 1.09000 * 109.47623 * 179.97438 * 24 23 22 48 48 H 1.08996 * 109.47270 * 180.02562 * 25 24 23 49 49 H 1.08996 * 109.47069 * 59.99959 * 25 24 23 50 50 H 1.09009 * 109.47245 * 299.99998 * 26 25 24 51 51 H 1.08996 * 109.47199 * 180.02562 * 26 25 24 52 52 H 1.09000 * 109.47570 * 180.02562 * 27 26 25 53 53 H 1.09003 * 109.46753 * 60.00411 * 27 26 25 54 54 H 1.09007 * 109.91586 * 265.98041 * 28 21 20 55 55 H 1.08997 * 109.91645 * 144.69130 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.1051 -0.8922 -1.3427 7 6 5.5009 -1.2979 -0.9448 8 1 6.2198 -0.5461 -0.6544 9 6 5.8605 -2.6290 -0.9526 10 7 4.9853 -3.5446 -1.3067 11 14 7.5908 -3.1319 -0.4601 12 1 7.8545 -2.6971 0.9352 13 1 7.7220 -4.6083 -0.5511 14 1 8.5713 -2.4901 -1.3722 15 6 4.2616 1.3336 -2.3218 16 8 4.1540 2.5393 -2.2474 17 6 4.7203 0.6960 -3.6079 18 1 3.9726 -0.0114 -3.9664 19 6 6.0778 -0.0141 -3.4003 20 6 6.8376 0.3004 -4.7135 21 7 6.4251 1.6942 -5.0194 22 6 6.6430 2.0083 -6.4378 23 6 8.1311 1.8742 -6.7672 24 6 8.3581 2.2020 -8.2442 25 6 7.9008 3.6349 -8.5248 26 6 6.4128 3.7691 -8.1955 27 6 6.1857 3.4412 -6.7184 28 6 4.9895 1.7750 -4.6731 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6887 1.8463 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 3.8514 0.5681 0.8410 35 1 3.9786 2.1764 0.0890 36 1 3.3852 -1.3630 -0.6734 37 1 3.9120 -1.2115 -2.3669 38 1 5.2381 -4.4810 -1.3118 39 1 6.6037 0.4026 -2.5412 40 1 5.9372 -1.0887 -3.2839 41 1 6.5266 -0.3763 -5.5094 42 1 7.9153 0.2429 -4.5607 43 1 6.0704 1.3164 -7.0554 44 1 8.7037 2.5661 -6.1496 45 1 8.4569 0.8535 -6.5669 46 1 7.7855 1.5103 -8.8621 47 1 9.4183 2.1069 -8.4788 48 1 8.0622 3.8683 -9.5772 49 1 8.4735 4.3266 -7.9069 50 1 5.8400 3.0773 -8.8133 51 1 6.0869 4.7897 -8.3957 52 1 5.1255 3.5363 -6.4838 53 1 6.7583 4.1329 -6.1005 54 1 4.3826 1.5827 -5.5580 55 1 4.7599 2.7610 -4.2692 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610505581.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:19 Heat of formation + Delta-G solvation = -109.897161 kcal Electronic energy + Delta-G solvation = -31706.444526 eV Core-core repulsion = 27741.861342 eV Total energy + Delta-G solvation = -3964.583184 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.46535 -40.11474 -38.77363 -37.75521 -36.67863 -34.54757 -33.38082 -31.85728 -31.28108 -29.84483 -29.00310 -28.80094 -27.13035 -24.92029 -24.61804 -23.62621 -23.25202 -21.86636 -21.58995 -20.63046 -19.69003 -18.40406 -18.28868 -17.57522 -17.34701 -17.10240 -16.50498 -16.36548 -16.08399 -15.89227 -15.56086 -15.18389 -15.12645 -14.91175 -14.72958 -14.40239 -14.19715 -13.90852 -13.70998 -13.51316 -13.28881 -13.13463 -13.01708 -12.86212 -12.80198 -12.70550 -12.60635 -12.53807 -12.35280 -12.14534 -12.11001 -12.03504 -11.92832 -11.83358 -11.74701 -11.46366 -11.40691 -11.08791 -10.84558 -10.71646 -10.57951 -10.39377 -9.41426 -9.30858 -8.10910 -6.20791 1.45293 1.46712 1.53129 1.77332 2.31044 2.49063 2.93579 2.99065 3.19458 3.60626 3.66511 3.83873 3.86853 3.99225 4.14299 4.15169 4.21019 4.32206 4.33111 4.35117 4.38552 4.40445 4.50803 4.52233 4.55184 4.55491 4.62194 4.64794 4.65889 4.70060 4.74626 4.83509 4.89524 4.94202 5.01226 5.02953 5.11369 5.14741 5.18815 5.23024 5.29889 5.31440 5.35938 5.38754 5.41980 5.48171 5.57808 5.74186 5.91011 5.97498 6.16259 6.23219 6.28405 6.64589 6.89616 7.34257 7.48367 8.94729 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010048 B = 0.003727 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2785.894828 B = 7510.967521 C = 9694.889858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.409 6.409 3 C 0.057 3.943 4 C 0.115 3.885 5 N -0.590 5.590 6 C 0.263 3.737 7 C -0.525 4.525 8 H 0.052 0.948 9 C 0.028 3.972 10 N -0.919 5.919 11 Si 0.943 3.057 12 H -0.277 1.277 13 H -0.285 1.285 14 H -0.267 1.267 15 C 0.521 3.479 16 O -0.591 6.591 17 C -0.110 4.110 18 H 0.092 0.908 19 C -0.085 4.085 20 C 0.040 3.960 21 N -0.521 5.521 22 C 0.078 3.922 23 C -0.109 4.109 24 C -0.114 4.114 25 C -0.117 4.117 26 C -0.113 4.113 27 C -0.109 4.109 28 C 0.060 3.940 29 H 0.089 0.911 30 H 0.057 0.943 31 H 0.041 0.959 32 H 0.081 0.919 33 H 0.040 0.960 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.023 0.977 37 H 0.021 0.979 38 H 0.265 0.735 39 H 0.054 0.946 40 H 0.080 0.920 41 H 0.050 0.950 42 H 0.085 0.915 43 H 0.038 0.962 44 H 0.061 0.939 45 H 0.058 0.942 46 H 0.063 0.937 47 H 0.073 0.927 48 H 0.075 0.925 49 H 0.060 0.940 50 H 0.063 0.937 51 H 0.072 0.928 52 H 0.053 0.947 53 H 0.059 0.941 54 H 0.053 0.947 55 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.188 9.995 -10.372 14.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.329 6.329 3 C -0.021 4.021 4 C -0.008 4.008 5 N -0.319 5.319 6 C 0.142 3.858 7 C -0.564 4.564 8 H 0.070 0.930 9 C -0.172 4.172 10 N -0.559 5.559 11 Si 0.769 3.231 12 H -0.203 1.203 13 H -0.211 1.211 14 H -0.192 1.192 15 C 0.310 3.690 16 O -0.474 6.474 17 C -0.132 4.132 18 H 0.110 0.890 19 C -0.123 4.123 20 C -0.087 4.087 21 N -0.246 5.246 22 C -0.030 4.030 23 C -0.147 4.147 24 C -0.152 4.152 25 C -0.155 4.155 26 C -0.151 4.151 27 C -0.147 4.147 28 C -0.068 4.068 29 H 0.107 0.893 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.099 0.901 33 H 0.058 0.942 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.041 0.959 37 H 0.039 0.961 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.099 0.901 41 H 0.068 0.932 42 H 0.103 0.897 43 H 0.056 0.944 44 H 0.080 0.920 45 H 0.077 0.923 46 H 0.081 0.919 47 H 0.092 0.908 48 H 0.094 0.906 49 H 0.079 0.921 50 H 0.082 0.918 51 H 0.090 0.910 52 H 0.072 0.928 53 H 0.078 0.922 54 H 0.072 0.928 55 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.134 10.604 -10.036 14.601 hybrid contribution -0.095 -1.146 0.252 1.177 sum 0.039 9.458 -9.784 13.608 Atomic orbital electron populations 1.22872 0.80018 1.03337 1.00607 1.88008 1.21147 1.28246 1.95472 1.22916 0.93608 0.84739 1.00788 1.21478 0.92891 0.99312 0.87089 1.48117 1.63702 1.09085 1.11032 1.19031 0.95896 0.73998 0.96862 1.21530 0.97476 0.92125 1.45291 0.92996 1.25459 1.00189 0.96334 0.95230 1.70019 1.35850 1.01370 1.48663 0.85842 0.81298 0.77024 0.78971 1.20268 1.21088 1.19212 1.20592 0.75912 0.86321 0.86141 1.90528 1.56717 1.15349 1.84820 1.21985 0.99852 0.98127 0.93250 0.88995 1.22391 0.92320 1.00756 0.96833 1.23262 1.00549 0.88712 0.96190 1.64841 1.15887 1.23775 1.20049 1.21897 0.97277 0.96962 0.86900 1.21556 0.94342 1.01535 0.97283 1.21508 1.01680 0.97165 0.94805 1.21541 0.95603 0.96593 1.01747 1.21508 0.97086 1.01898 0.94652 1.21550 1.00537 0.95237 0.97384 1.22678 0.89151 0.99210 0.95785 0.89273 0.92405 0.93988 0.90081 0.94214 0.90235 0.89096 0.95851 0.96135 0.92623 0.92671 0.90126 0.93165 0.89674 0.94375 0.92017 0.92279 0.91863 0.90846 0.90644 0.92138 0.91838 0.90970 0.92824 0.92210 0.92836 0.89913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 11.01 113.37 1.25 1.97 16 2 O -0.41 -14.65 9.53 -148.98 -1.42 -16.07 16 3 C 0.06 1.86 6.28 71.98 0.45 2.31 16 4 C 0.12 4.36 5.81 86.38 0.50 4.86 16 5 N -0.59 -25.53 2.42 -826.13 -2.00 -27.52 16 6 C 0.26 12.76 4.52 85.63 0.39 13.14 16 7 C -0.53 -26.77 6.18 25.60 0.16 -26.61 16 8 H 0.05 2.70 7.23 -2.91 -0.02 2.68 16 9 C 0.03 1.45 5.38 84.66 0.46 1.90 16 10 N -0.92 -50.41 13.29 21.45 0.28 -50.13 16 11 Si 0.94 41.54 29.54 68.60 2.03 43.56 16 12 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 13 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 14 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 15 C 0.52 22.27 6.92 87.66 0.61 22.87 16 16 O -0.59 -26.72 14.82 -3.05 -0.05 -26.77 16 17 C -0.11 -4.23 2.46 -10.66 -0.03 -4.26 16 18 H 0.09 3.50 7.32 -2.39 -0.02 3.48 16 19 C -0.08 -3.32 4.42 31.80 0.14 -3.18 16 20 C 0.04 1.30 5.46 86.65 0.47 1.77 16 21 N -0.52 -16.37 5.11 -857.85 -4.38 -20.76 16 22 C 0.08 1.96 1.62 44.91 0.07 2.03 16 23 C -0.11 -2.41 5.08 30.59 0.16 -2.25 16 24 C -0.11 -1.92 5.92 30.60 0.18 -1.74 16 25 C -0.12 -1.84 5.92 30.60 0.18 -1.65 16 26 C -0.11 -1.97 5.92 30.59 0.18 -1.79 16 27 C -0.11 -2.51 5.13 30.59 0.16 -2.35 16 28 C 0.06 2.02 5.05 86.44 0.44 2.45 16 29 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.08 3.06 8.07 -2.39 -0.02 3.05 16 35 H 0.09 3.30 7.42 -2.39 -0.02 3.29 16 36 H 0.02 1.25 7.11 -2.39 -0.02 1.24 16 37 H 0.02 1.05 6.01 -2.39 -0.01 1.04 16 38 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 39 H 0.05 2.41 6.89 -2.38 -0.02 2.39 16 40 H 0.08 3.54 6.34 -2.39 -0.02 3.52 16 41 H 0.05 1.51 7.99 -2.39 -0.02 1.49 16 42 H 0.08 2.61 7.65 -2.38 -0.02 2.60 16 43 H 0.04 0.97 8.00 -2.39 -0.02 0.95 16 44 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.06 1.33 6.95 -2.39 -0.02 1.32 16 46 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 49 H 0.06 0.98 8.14 -2.39 -0.02 0.97 16 50 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 51 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 52 H 0.05 1.31 7.15 -2.39 -0.02 1.29 16 53 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 54 H 0.05 1.61 7.58 -2.38 -0.02 1.60 16 55 H 0.08 3.10 6.42 -2.39 -0.02 3.09 16 Total: -1.00 -60.24 411.42 1.06 -59.18 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: 0.84 Total: 29.03 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: 5.76 Total: 9.48 kcal Atomic # 7 Polarization: -92.31 SS G_CDS: -6.10 Total: -98.41 kcal Atomic # 8 Polarization: -41.38 SS G_CDS: -1.46 Total: -42.84 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.56 kcal Total: -60.24 1.06 -59.18 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610505581.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.720 kcal (2) G-P(sol) polarization free energy of solvation -60.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds