Wall clock time and date at job start Tue Mar 31 2020 22:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45196 * 109.47121 * 2 1 4 4 C 1.34233 * 116.99855 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00364 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99802 * 180.02562 * 4 3 2 7 7 H 1.09000 * 109.47234 * 60.00224 * 6 4 3 8 8 C 1.52994 * 109.47094 * 299.99954 * 6 4 3 9 9 C 1.53008 * 109.46991 * 179.97438 * 8 6 4 10 10 C 1.53002 * 109.46724 * 60.00209 * 9 8 6 11 11 H 1.09000 * 109.47193 * 59.99973 * 10 9 8 12 12 N 1.46900 * 109.46555 * 179.97438 * 10 9 8 13 13 C 1.46897 * 111.00439 * 274.99844 * 12 10 9 14 14 C 1.53034 * 109.46478 * 155.00165 * 13 12 10 15 15 C 1.53194 * 109.31631 * 181.38805 * 14 13 12 16 16 N 1.46928 * 108.88836 * 305.29172 * 15 14 13 17 17 C 1.36934 * 120.63084 * 233.67060 * 16 15 14 18 18 H 1.07993 * 120.00334 * 27.39912 * 17 16 15 19 19 C 1.38820 * 119.99795 * 207.39526 * 17 16 15 20 20 N 1.31613 * 120.00097 * 17.26991 * 19 17 16 21 21 Si 1.86807 * 119.99669 * 197.26997 * 19 17 16 22 22 H 1.48498 * 109.47115 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46875 * 120.00003 * 21 19 17 24 24 H 1.48497 * 109.47091 * 240.00248 * 21 19 17 25 25 C 1.47211 * 118.55611 * 53.54535 * 16 15 14 26 26 C 1.53045 * 109.46059 * 275.07233 * 13 12 10 27 27 C 1.52994 * 109.47216 * 299.99654 * 10 9 8 28 28 C 1.52996 * 109.47056 * 179.97438 * 6 4 3 29 29 H 1.09006 * 109.47408 * 60.00264 * 28 6 4 30 30 C 1.52999 * 109.47265 * 300.00369 * 28 6 4 31 31 H 1.08993 * 109.47306 * 299.99798 * 1 2 3 32 32 H 1.09006 * 109.47190 * 60.00072 * 1 2 3 33 33 H 1.08997 * 109.47385 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.46960 * 240.00568 * 2 1 3 35 35 H 1.08994 * 109.47266 * 120.00336 * 2 1 3 36 36 H 1.09000 * 109.47301 * 300.00229 * 8 6 4 37 37 H 1.09001 * 109.47222 * 60.00540 * 8 6 4 38 38 H 1.08998 * 109.47149 * 299.99736 * 9 8 6 39 39 H 1.09005 * 109.46888 * 180.02562 * 9 8 6 40 40 H 1.00904 * 111.00130 * 151.04630 * 12 10 9 41 41 H 1.08998 * 109.44622 * 35.03339 * 13 12 10 42 42 H 1.08997 * 109.49513 * 61.43676 * 14 13 12 43 43 H 1.09004 * 109.49828 * 301.33903 * 14 13 12 44 44 H 1.09000 * 109.58642 * 65.14938 * 15 14 13 45 45 H 1.09000 * 109.58560 * 185.43802 * 15 14 13 46 46 H 0.97008 * 119.99917 * 179.97438 * 20 19 17 47 47 H 1.08998 * 109.53679 * 186.67414 * 25 16 15 48 48 H 1.08996 * 109.68174 * 66.35764 * 25 16 15 49 49 H 1.09000 * 109.49621 * 298.56344 * 26 13 12 50 50 H 1.09003 * 109.49716 * 58.62711 * 26 13 12 51 51 H 1.08995 * 109.47335 * 180.02562 * 27 10 9 52 52 H 1.09009 * 109.47425 * 300.00519 * 27 10 9 53 53 H 1.09000 * 109.47041 * 299.99584 * 30 28 6 54 54 H 1.09000 * 109.47404 * 60.00173 * 30 28 6 55 55 H 1.09009 * 109.47150 * 180.02562 * 30 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0015 6 6 3.9207 2.9374 0.0000 7 1 3.5853 3.4690 0.8905 8 6 3.4486 3.6850 -1.2485 9 6 4.0329 5.0991 -1.2476 10 6 5.5609 5.0195 -1.2481 11 1 5.8967 4.4882 -2.1386 12 7 6.1218 6.3772 -1.2479 13 6 6.2120 6.9099 -2.6139 14 6 6.1860 8.4393 -2.5676 15 6 6.2453 8.9906 -3.9956 16 7 7.4223 8.4302 -4.6734 17 6 8.3417 9.2519 -5.2687 18 1 8.4828 10.2585 -4.9036 19 6 9.0925 8.7912 -6.3416 20 7 8.7069 7.7208 -7.0033 21 14 10.6503 9.6904 -6.8461 22 1 10.8630 10.8539 -5.9483 23 1 11.8096 8.7680 -6.7433 24 1 10.5168 10.1637 -8.2473 25 6 7.5919 6.9680 -4.6953 26 6 7.5175 6.4395 -3.2594 27 6 6.0330 4.2719 0.0004 28 6 5.4486 2.8573 -0.0001 29 1 5.7846 2.3256 -0.8904 30 6 5.9203 2.1098 1.2487 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5138 0.8899 36 1 3.7841 3.1534 -2.1390 37 1 2.3601 3.7422 -1.2479 38 1 3.6970 5.6305 -0.3572 39 1 3.6961 5.6320 -2.1369 40 1 7.0218 6.3965 -0.7921 41 1 5.3667 6.5499 -3.2003 42 1 7.0449 8.8008 -2.0021 43 1 5.2665 8.7732 -2.0866 44 1 5.3424 8.7050 -4.5353 45 1 6.3244 10.0773 -3.9648 46 1 9.2314 7.3991 -7.7533 47 1 8.5619 6.7200 -5.1261 48 1 6.8003 6.5156 -5.2926 49 1 8.3638 6.8198 -2.6874 50 1 7.5460 5.3499 -3.2704 51 1 7.1215 4.2155 0.0003 52 1 5.6971 4.8033 0.8910 53 1 5.5844 2.6415 2.1390 54 1 5.5037 1.1025 1.2483 55 1 7.0089 2.0531 1.2488 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611218207.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:00 Heat of formation + Delta-G solvation = -108.511852 kcal Electronic energy + Delta-G solvation = -30674.840300 eV Core-core repulsion = 26710.317188 eV Total energy + Delta-G solvation = -3964.523113 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.93013 -40.21011 -39.02491 -37.67936 -36.21768 -34.11985 -33.30857 -32.60597 -31.84804 -31.44002 -29.39872 -27.73611 -26.43724 -24.74689 -23.79174 -23.66439 -23.24980 -22.43563 -21.24700 -20.95700 -20.56005 -18.78730 -18.66558 -17.61842 -17.48700 -16.91741 -16.41022 -16.14222 -15.75953 -15.52994 -15.34834 -15.26970 -15.01239 -14.77622 -14.75676 -14.31411 -14.20039 -14.07135 -13.68559 -13.42891 -13.26499 -13.16622 -13.04425 -12.95864 -12.75015 -12.61915 -12.55687 -12.48406 -12.40984 -12.35415 -12.21514 -12.06139 -11.93913 -11.83066 -11.76146 -11.53711 -11.46332 -11.31280 -11.19084 -11.05857 -10.85726 -10.57619 -9.24634 -8.68734 -7.88079 -5.32662 1.14678 1.44664 1.46507 1.57353 1.68043 2.50454 3.12011 3.27953 3.50717 3.64394 3.68664 3.73728 3.99011 4.00660 4.07997 4.10374 4.11703 4.22643 4.26387 4.34583 4.36615 4.42554 4.45929 4.49853 4.55914 4.64698 4.70502 4.72249 4.81480 4.83897 4.86946 4.92362 4.95926 5.00258 5.01729 5.02900 5.12723 5.14774 5.23338 5.26621 5.27519 5.30310 5.34697 5.37294 5.39803 5.49471 5.52223 5.59539 5.64141 5.71529 6.22060 6.38288 6.58387 6.73422 7.13694 7.85790 8.37991 9.18358 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.021168 B = 0.002087 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.407591 B =13412.530470 C =13513.758343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.052 3.948 3 O -0.360 6.360 4 C 0.467 3.533 5 O -0.531 6.531 6 C -0.069 4.069 7 H 0.131 0.869 8 C -0.104 4.104 9 C -0.097 4.097 10 C 0.083 3.917 11 H 0.026 0.974 12 N -0.672 5.672 13 C 0.109 3.891 14 C -0.103 4.103 15 C 0.139 3.861 16 N -0.610 5.610 17 C -0.258 4.258 18 H 0.068 0.932 19 C -0.055 4.055 20 N -0.937 5.937 21 Si 0.967 3.033 22 H -0.265 1.265 23 H -0.291 1.291 24 H -0.292 1.292 25 C 0.181 3.819 26 C -0.151 4.151 27 C -0.103 4.103 28 C -0.068 4.068 29 H 0.058 0.942 30 C -0.156 4.156 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.054 0.946 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.057 0.943 40 H 0.343 0.657 41 H 0.061 0.939 42 H 0.052 0.948 43 H 0.080 0.920 44 H 0.012 0.988 45 H 0.054 0.946 46 H 0.249 0.751 47 H 0.049 0.951 48 H -0.008 1.008 49 H 0.052 0.948 50 H 0.055 0.945 51 H 0.068 0.932 52 H 0.088 0.912 53 H 0.065 0.935 54 H 0.061 0.939 55 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.026 -13.208 19.732 28.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 O -0.277 6.277 4 C 0.311 3.689 5 O -0.420 6.420 6 C -0.087 4.087 7 H 0.148 0.852 8 C -0.142 4.142 9 C -0.136 4.136 10 C -0.027 4.027 11 H 0.044 0.956 12 N -0.302 5.302 13 C -0.001 4.001 14 C -0.142 4.142 15 C 0.013 3.987 16 N -0.334 5.334 17 C -0.388 4.388 18 H 0.085 0.915 19 C -0.250 4.250 20 N -0.584 5.584 21 Si 0.795 3.205 22 H -0.189 1.189 23 H -0.218 1.218 24 H -0.219 1.219 25 C 0.054 3.946 26 C -0.191 4.191 27 C -0.141 4.141 28 C -0.087 4.087 29 H 0.077 0.923 30 C -0.213 4.213 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.116 0.884 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.108 0.892 38 H 0.102 0.898 39 H 0.076 0.924 40 H 0.161 0.839 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.099 0.901 44 H 0.030 0.970 45 H 0.073 0.927 46 H 0.058 0.942 47 H 0.068 0.932 48 H 0.010 0.990 49 H 0.071 0.929 50 H 0.073 0.927 51 H 0.086 0.914 52 H 0.106 0.894 53 H 0.084 0.916 54 H 0.080 0.920 55 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.389 -13.260 19.753 28.334 hybrid contribution 1.852 -0.581 -1.479 2.440 sum -13.536 -13.841 18.274 26.622 Atomic orbital electron populations 1.21819 0.90561 1.04268 1.03737 1.23253 0.97029 0.79460 1.02358 1.86525 1.24191 1.33434 1.83536 1.24161 0.80528 0.93079 0.71098 1.90602 1.60695 1.44318 1.46429 1.21239 0.95826 0.88644 1.03041 0.85155 1.21482 1.01895 0.95551 0.95250 1.21453 0.93661 0.95304 1.03136 1.21585 0.95744 0.88214 0.97144 0.95559 1.60714 1.30945 1.21893 1.16634 1.21272 0.95226 0.95104 0.88519 1.21786 1.01737 0.94427 0.96249 1.21098 0.88391 0.96970 0.92223 1.44395 1.23496 1.02022 1.63517 1.19568 1.13556 0.97153 1.08571 0.91460 1.25811 1.03483 0.99578 0.96147 1.70200 1.39307 1.27613 1.21251 0.85213 0.79665 0.78181 0.77452 1.18935 1.21789 1.21935 1.20521 0.98777 0.83044 0.92233 1.22639 0.99025 0.99030 0.98423 1.21689 1.00466 0.93753 0.98173 1.20908 0.91823 0.96332 0.99639 0.92335 1.22016 1.01581 1.00963 0.96701 0.91057 0.91462 0.88410 0.91810 0.91224 0.92743 0.89201 0.89772 0.92435 0.83853 0.92026 0.92875 0.90122 0.97036 0.92715 0.94220 0.93211 0.98993 0.92929 0.92684 0.91380 0.89371 0.91574 0.92039 0.92338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.29 71.98 0.74 -0.53 16 2 C 0.05 0.75 6.19 71.98 0.45 1.19 16 3 O -0.36 -6.48 10.12 -51.45 -0.52 -7.00 16 4 C 0.47 9.39 6.96 71.24 0.50 9.88 16 5 O -0.53 -13.43 13.41 21.97 0.29 -13.13 16 6 C -0.07 -1.13 2.16 -11.54 -0.02 -1.15 16 7 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 8 C -0.10 -1.75 5.14 30.59 0.16 -1.60 16 9 C -0.10 -1.84 5.41 30.60 0.17 -1.67 16 10 C 0.08 1.77 2.30 44.91 0.10 1.88 16 11 H 0.03 0.68 7.10 -2.39 -0.02 0.67 16 12 N -0.67 -16.41 6.06 -469.35 -2.84 -19.25 16 13 C 0.11 3.43 2.24 44.94 0.10 3.53 16 14 C -0.10 -3.40 5.69 30.67 0.17 -3.22 16 15 C 0.14 5.80 6.51 86.36 0.56 6.36 16 16 N -0.61 -31.14 3.01 -698.36 -2.10 -33.24 16 17 C -0.26 -14.43 9.59 84.04 0.81 -13.62 16 18 H 0.07 3.66 7.88 -2.91 -0.02 3.64 16 19 C -0.06 -3.14 4.92 84.86 0.42 -2.73 16 20 N -0.94 -56.59 11.18 21.65 0.24 -56.34 16 21 Si 0.97 45.54 29.59 68.60 2.03 47.57 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 23 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 24 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 25 C 0.18 8.90 5.33 86.31 0.46 9.36 16 26 C -0.15 -5.64 5.31 30.67 0.16 -5.47 16 27 C -0.10 -1.78 4.48 30.61 0.14 -1.64 16 28 C -0.07 -1.23 1.89 -10.78 -0.02 -1.25 16 29 H 0.06 1.30 8.10 -2.38 -0.02 1.28 16 30 C -0.16 -2.70 8.87 71.98 0.64 -2.06 16 31 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 33 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.06 0.97 8.13 -2.39 -0.02 0.95 16 35 H 0.07 0.97 8.13 -2.39 -0.02 0.95 16 36 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.09 1.33 8.11 -2.39 -0.02 1.31 16 38 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.06 1.25 7.43 -2.38 -0.02 1.23 16 40 H 0.34 8.05 8.10 -89.69 -0.73 7.33 16 41 H 0.06 2.07 7.11 -2.39 -0.02 2.05 16 42 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 44 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.05 2.23 7.93 -2.39 -0.02 2.21 16 46 H 0.25 14.51 8.31 -92.70 -0.77 13.74 16 47 H 0.05 2.80 6.04 -2.39 -0.01 2.78 16 48 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 49 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 50 H 0.05 1.92 7.41 -2.39 -0.02 1.90 16 51 H 0.07 1.20 8.12 -2.39 -0.02 1.18 16 52 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 53 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 54 H 0.06 1.30 5.52 -2.39 -0.01 1.28 16 55 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 Total: -1.00 -66.59 415.38 2.74 -63.84 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: 0.12 Total: 20.29 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: 5.52 Total: -2.74 kcal Atomic # 7 Polarization: -104.14 SS G_CDS: -4.70 Total: -108.84 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.23 Total: -20.14 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -66.59 2.74 -63.84 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611218207.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.668 kcal (2) G-P(sol) polarization free energy of solvation -66.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds