Wall clock time and date at job start Tue Mar 31 2020 22:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45197 * 109.47100 * 2 1 4 4 C 1.34230 * 117.00539 * 180.02562 * 3 2 1 5 5 O 1.20830 * 119.99543 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00379 * 180.02562 * 4 3 2 7 7 H 1.08992 * 109.47486 * 59.99615 * 6 4 3 8 8 C 1.53007 * 109.47011 * 299.99652 * 6 4 3 9 9 C 1.52992 * 109.47185 * 180.02562 * 8 6 4 10 10 C 1.53000 * 109.47283 * 60.00131 * 9 8 6 11 11 H 1.08992 * 109.47170 * 59.99746 * 10 9 8 12 12 N 1.46900 * 109.47122 * 180.02562 * 10 9 8 13 13 C 1.46901 * 110.99878 * 274.07551 * 12 10 9 14 14 C 1.53037 * 109.45909 * 272.42124 * 13 12 10 15 15 C 1.53199 * 109.30814 * 178.61388 * 14 13 12 16 16 N 1.46918 * 108.77589 * 54.63778 * 15 14 13 17 17 C 1.36942 * 120.63043 * 126.36527 * 16 15 14 18 18 H 1.07999 * 120.00087 * 331.31596 * 17 16 15 19 19 C 1.38810 * 120.00124 * 151.03547 * 17 16 15 20 20 N 1.31629 * 119.99816 * 346.00544 * 19 17 16 21 21 Si 1.86799 * 120.00107 * 166.00594 * 19 17 16 22 22 H 1.48497 * 109.47457 * 90.00283 * 21 19 17 23 23 H 1.48507 * 109.46788 * 210.00022 * 21 19 17 24 24 H 1.48497 * 109.47035 * 329.99837 * 21 19 17 25 25 C 1.46924 * 118.74196 * 306.64116 * 16 15 14 26 26 C 1.52755 * 109.00746 * 53.30957 * 25 16 15 27 27 C 1.52998 * 109.47140 * 299.99674 * 10 9 8 28 28 C 1.53000 * 109.47196 * 179.97438 * 6 4 3 29 29 H 1.09003 * 109.46948 * 299.99464 * 28 6 4 30 30 C 1.53002 * 109.47226 * 59.99471 * 28 6 4 31 31 H 1.09000 * 109.47463 * 299.99956 * 1 2 3 32 32 H 1.09003 * 109.47429 * 60.00667 * 1 2 3 33 33 H 1.09009 * 109.46689 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47463 * 240.00044 * 2 1 3 35 35 H 1.08999 * 109.47696 * 119.99756 * 2 1 3 36 36 H 1.09002 * 109.47010 * 300.00234 * 8 6 4 37 37 H 1.08998 * 109.47177 * 59.99885 * 8 6 4 38 38 H 1.09002 * 109.47164 * 299.99926 * 9 8 6 39 39 H 1.08998 * 109.47108 * 180.02562 * 9 8 6 40 40 H 1.00899 * 110.99981 * 150.12333 * 12 10 9 41 41 H 1.09004 * 109.44805 * 32.39274 * 13 12 10 42 42 H 1.08996 * 109.49613 * 58.66925 * 14 13 12 43 43 H 1.08995 * 109.52933 * 298.57632 * 14 13 12 44 44 H 1.09006 * 109.58923 * 294.84536 * 15 14 13 45 45 H 1.08997 * 109.58352 * 174.42703 * 15 14 13 46 46 H 0.97001 * 119.99555 * 179.97438 * 20 19 17 47 47 H 1.08994 * 109.59014 * 173.14399 * 25 16 15 48 48 H 1.09000 * 109.58629 * 293.57381 * 25 16 15 49 49 H 1.08999 * 109.56802 * 185.55981 * 26 25 16 50 50 H 1.08996 * 109.38903 * 65.51701 * 26 25 16 51 51 H 1.08998 * 109.47414 * 180.02562 * 27 10 9 52 52 H 1.09001 * 109.47181 * 300.00689 * 27 10 9 53 53 H 1.09001 * 109.46752 * 179.97438 * 30 28 6 54 54 H 1.08988 * 109.47521 * 300.00278 * 30 28 6 55 55 H 1.09002 * 109.47124 * 60.00680 * 30 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9206 2.9375 0.0000 7 1 3.5850 3.4691 0.8904 8 6 3.4484 3.6852 -1.2487 9 6 4.0336 5.0987 -1.2485 10 6 5.5615 5.0182 -1.2495 11 1 5.8967 4.4863 -2.1399 12 7 6.1234 6.3755 -1.2487 13 6 6.2338 6.9004 -2.6163 14 6 7.5775 6.4806 -3.2166 15 6 7.6744 7.0002 -4.6545 16 7 7.4425 8.4510 -4.6497 17 6 8.3466 9.3039 -5.2246 18 1 9.3916 9.0347 -5.2670 19 6 7.9189 10.5120 -5.7580 20 7 6.6361 10.7230 -5.9642 21 14 9.1638 11.8381 -6.1834 22 1 9.6144 11.6621 -7.5874 23 1 8.5354 13.1747 -6.0291 24 1 10.3312 11.7318 -5.2718 25 6 6.2254 8.9698 -4.0110 26 6 6.1419 8.4278 -2.5853 27 6 6.0337 4.2707 -0.0009 28 6 5.4485 2.8575 -0.0001 29 1 5.7845 2.3251 0.8897 30 6 5.9200 2.1110 -1.2497 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 -0.3633 -1.0278 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 3.7840 3.1535 -2.1391 37 1 2.3599 3.7421 -1.2482 38 1 3.6984 5.6306 -0.3580 39 1 3.6969 5.6315 -2.1378 40 1 7.0167 6.3968 -0.7801 41 1 5.4231 6.5001 -3.2252 42 1 7.6519 5.3932 -3.2170 43 1 8.3891 6.9007 -2.6226 44 1 6.9201 6.5116 -5.2713 45 1 8.6670 6.7901 -5.0528 46 1 6.3373 11.5673 -6.3366 47 1 6.2622 10.0588 -3.9848 48 1 5.3504 8.6451 -4.5741 49 1 5.1946 8.7261 -2.1362 50 1 6.9663 8.8299 -1.9965 51 1 7.1222 4.2137 -0.0014 52 1 5.6984 4.8025 0.8895 53 1 7.0086 2.0544 -1.2499 54 1 5.5035 1.1038 -1.2500 55 1 5.5841 2.6435 -2.1395 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611218208.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:04 Heat of formation + Delta-G solvation = -103.931495 kcal Electronic energy + Delta-G solvation = -30837.220522 eV Core-core repulsion = 26872.896028 eV Total energy + Delta-G solvation = -3964.324493 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.99775 -40.30580 -39.11417 -37.65809 -36.21789 -34.02363 -32.98458 -32.42390 -31.98559 -31.35642 -29.38453 -28.08976 -26.44150 -24.74169 -23.85308 -23.69689 -23.37061 -22.60879 -21.59696 -20.83446 -19.60779 -18.72729 -18.65472 -17.63073 -17.55267 -16.91632 -16.56487 -16.18624 -15.94096 -15.34123 -15.23411 -15.10650 -15.00088 -14.80342 -14.66820 -14.53132 -14.25075 -13.95898 -13.77287 -13.58078 -13.37467 -13.18070 -12.98415 -12.93458 -12.66004 -12.57098 -12.54212 -12.53836 -12.37661 -12.31645 -12.21461 -11.94198 -11.91328 -11.89302 -11.79310 -11.52002 -11.46066 -11.17630 -11.16914 -11.00148 -10.81855 -10.53465 -9.18157 -8.65254 -7.86061 -5.33674 1.15772 1.46549 1.47797 1.57616 1.69448 2.51460 3.15214 3.30970 3.52708 3.65496 3.70621 3.76311 3.98962 4.00747 4.08304 4.11948 4.16696 4.21131 4.24918 4.34797 4.37811 4.42617 4.44904 4.48021 4.56488 4.62561 4.72500 4.76681 4.84487 4.86161 4.89523 4.92479 4.97273 4.97775 5.02540 5.07869 5.13640 5.17440 5.19157 5.26003 5.29392 5.31885 5.33202 5.35244 5.40248 5.51540 5.55476 5.62678 5.66403 5.78678 6.25937 6.41702 6.63227 6.74469 7.16588 7.87434 8.39224 9.20100 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.027076 B = 0.002058 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.892267 B =13599.829857 C =13970.215553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.361 6.361 4 C 0.467 3.533 5 O -0.529 6.529 6 C -0.071 4.071 7 H 0.128 0.872 8 C -0.104 4.104 9 C -0.100 4.100 10 C 0.085 3.915 11 H 0.040 0.960 12 N -0.679 5.679 13 C 0.111 3.889 14 C -0.143 4.143 15 C 0.144 3.856 16 N -0.610 5.610 17 C -0.263 4.263 18 H 0.064 0.936 19 C -0.053 4.053 20 N -0.936 5.936 21 Si 0.969 3.031 22 H -0.285 1.285 23 H -0.292 1.292 24 H -0.270 1.270 25 C 0.178 3.822 26 C -0.109 4.109 27 C -0.106 4.106 28 C -0.064 4.064 29 H 0.080 0.920 30 C -0.162 4.162 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.098 0.902 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.053 0.947 40 H 0.344 0.656 41 H 0.060 0.940 42 H 0.071 0.929 43 H 0.057 0.943 44 H 0.010 0.990 45 H 0.050 0.950 46 H 0.250 0.750 47 H 0.054 0.946 48 H -0.008 1.008 49 H 0.064 0.936 50 H 0.046 0.954 51 H 0.072 0.928 52 H 0.083 0.917 53 H 0.056 0.944 54 H 0.061 0.939 55 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.867 -20.575 16.305 28.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.278 6.278 4 C 0.312 3.688 5 O -0.419 6.419 6 C -0.089 4.089 7 H 0.146 0.854 8 C -0.142 4.142 9 C -0.138 4.138 10 C -0.025 4.025 11 H 0.058 0.942 12 N -0.309 5.309 13 C 0.001 3.999 14 C -0.184 4.184 15 C 0.018 3.982 16 N -0.334 5.334 17 C -0.393 4.393 18 H 0.082 0.918 19 C -0.248 4.248 20 N -0.582 5.582 21 Si 0.797 3.203 22 H -0.211 1.211 23 H -0.218 1.218 24 H -0.195 1.195 25 C 0.051 3.949 26 C -0.149 4.149 27 C -0.143 4.143 28 C -0.084 4.084 29 H 0.099 0.901 30 C -0.219 4.219 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.116 0.884 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.163 0.837 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.076 0.924 44 H 0.028 0.972 45 H 0.068 0.932 46 H 0.059 0.941 47 H 0.072 0.928 48 H 0.010 0.990 49 H 0.082 0.918 50 H 0.065 0.935 51 H 0.091 0.909 52 H 0.102 0.898 53 H 0.076 0.924 54 H 0.080 0.920 55 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.358 -20.457 16.368 28.172 hybrid contribution 1.302 0.181 -1.145 1.743 sum -9.055 -20.276 15.223 26.923 Atomic orbital electron populations 1.21823 0.90690 1.04254 1.03683 1.23246 0.96944 0.79454 1.02402 1.86529 1.24311 1.33451 1.83538 1.24143 0.80488 0.93058 0.71117 1.90600 1.60639 1.44254 1.46410 1.21219 0.96130 0.88638 1.02949 0.85413 1.21498 1.01589 0.95426 0.95671 1.21461 0.94259 0.95332 1.02777 1.21607 0.95282 0.87879 0.97697 0.94197 1.60632 1.31614 1.22545 1.16084 1.21239 0.95489 0.94444 0.88768 1.22512 0.98523 0.99814 0.97552 1.20972 0.98155 0.84229 0.94872 1.44293 1.23217 1.01119 1.64762 1.19497 0.89408 0.99538 1.30839 0.91808 1.25861 0.97648 1.02145 0.99121 1.70175 1.14862 1.24681 1.48468 0.85260 0.78637 0.78451 0.77992 1.21150 1.21782 1.19535 1.20515 0.86527 0.98163 0.89651 1.21853 1.00658 0.95306 0.97087 1.21671 1.00693 0.93864 0.98119 1.20863 0.91557 0.96244 0.99693 0.90132 1.22146 1.01400 1.00964 0.97416 0.91172 0.91491 0.88386 0.91659 0.91239 0.91992 0.89699 0.90406 0.92789 0.83723 0.92176 0.91093 0.92421 0.97214 0.93152 0.94110 0.92789 0.98999 0.91787 0.93493 0.90936 0.89846 0.92448 0.91975 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.29 71.98 0.74 -0.52 16 2 C 0.05 0.73 6.19 71.98 0.45 1.17 16 3 O -0.36 -6.37 10.12 -51.41 -0.52 -6.89 16 4 C 0.47 9.00 6.96 71.23 0.50 9.50 16 5 O -0.53 -12.71 13.41 21.95 0.29 -12.41 16 6 C -0.07 -1.10 2.41 -11.54 -0.03 -1.13 16 7 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 8 C -0.10 -1.72 4.86 30.59 0.15 -1.57 16 9 C -0.10 -1.92 5.42 30.59 0.17 -1.76 16 10 C 0.08 1.71 2.02 44.91 0.09 1.80 16 11 H 0.04 0.91 5.59 -2.39 -0.01 0.89 16 12 N -0.68 -16.62 6.07 -469.32 -2.85 -19.47 16 13 C 0.11 3.50 2.23 44.94 0.10 3.60 16 14 C -0.14 -4.69 5.31 30.67 0.16 -4.53 16 15 C 0.14 6.05 6.52 86.37 0.56 6.61 16 16 N -0.61 -31.21 3.00 -699.95 -2.10 -33.31 16 17 C -0.26 -14.70 9.59 84.03 0.81 -13.89 16 18 H 0.06 3.48 7.87 -2.91 -0.02 3.46 16 19 C -0.05 -2.98 4.98 84.86 0.42 -2.56 16 20 N -0.94 -56.15 11.09 21.65 0.24 -55.91 16 21 Si 0.97 45.41 29.58 68.60 2.03 47.44 16 22 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 23 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 25 C 0.18 8.75 5.25 86.22 0.45 9.21 16 26 C -0.11 -4.18 5.67 30.53 0.17 -4.01 16 27 C -0.11 -1.69 4.71 30.58 0.14 -1.54 16 28 C -0.06 -1.06 2.36 -10.81 -0.03 -1.09 16 29 H 0.08 1.33 8.10 -2.39 -0.02 1.31 16 30 C -0.16 -3.12 8.18 71.98 0.59 -2.53 16 31 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.10 0.47 8.14 -2.38 -0.02 0.45 16 34 H 0.06 0.94 8.13 -2.39 -0.02 0.92 16 35 H 0.07 0.93 8.13 -2.39 -0.02 0.91 16 36 H 0.06 1.13 6.43 -2.39 -0.02 1.12 16 37 H 0.08 1.28 8.11 -2.39 -0.02 1.26 16 38 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.05 1.23 7.53 -2.39 -0.02 1.21 16 40 H 0.34 7.87 8.04 -89.69 -0.72 7.15 16 41 H 0.06 2.03 7.18 -2.38 -0.02 2.01 16 42 H 0.07 1.97 7.63 -2.39 -0.02 1.95 16 43 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.01 0.42 8.14 -2.38 -0.02 0.41 16 45 H 0.05 2.08 7.93 -2.39 -0.02 2.06 16 46 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 47 H 0.05 3.03 6.04 -2.39 -0.01 3.01 16 48 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 49 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 50 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 51 H 0.07 1.12 8.12 -2.39 -0.02 1.11 16 52 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 53 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 54 H 0.06 1.39 5.52 -2.39 -0.01 1.38 16 55 H 0.05 1.08 4.81 -2.39 -0.01 1.07 16 Total: -1.00 -66.01 408.73 2.68 -63.33 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: 0.14 Total: 20.46 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: 5.45 Total: -3.24 kcal Atomic # 7 Polarization: -103.99 SS G_CDS: -4.71 Total: -108.69 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.23 Total: -19.31 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -66.01 2.68 -63.33 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611218208.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.598 kcal (2) G-P(sol) polarization free energy of solvation -66.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds