Wall clock time and date at job start Tue Mar 31 2020 22:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45194 * 109.47487 * 2 1 4 4 C 1.34230 * 117.00311 * 180.02562 * 3 2 1 5 5 O 1.20823 * 119.99791 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99987 * 179.97438 * 4 3 2 7 7 H 1.08998 * 109.47519 * 60.00352 * 6 4 3 8 8 C 1.53001 * 109.47140 * 299.99504 * 6 4 3 9 9 C 1.53001 * 109.46904 * 179.97438 * 8 6 4 10 10 C 1.53001 * 109.47067 * 60.00399 * 9 8 6 11 11 H 1.08997 * 109.47592 * 179.97438 * 10 9 8 12 12 N 1.46898 * 109.47085 * 59.99751 * 10 9 8 13 13 C 1.46897 * 111.00236 * 86.29722 * 12 10 9 14 14 C 1.53045 * 109.46115 * 86.61121 * 13 12 10 15 15 C 1.53189 * 109.34156 * 181.37221 * 14 13 12 16 16 N 1.46934 * 108.77290 * 305.41395 * 15 14 13 17 17 C 1.36927 * 120.60642 * 233.53384 * 16 15 14 18 18 H 1.07997 * 120.00029 * 28.72011 * 17 16 15 19 19 C 1.38817 * 120.00137 * 208.71892 * 17 16 15 20 20 N 1.31615 * 120.00011 * 16.21459 * 19 17 16 21 21 Si 1.86798 * 120.00058 * 196.21145 * 19 17 16 22 22 H 1.48495 * 109.47219 * 90.00057 * 21 19 17 23 23 H 1.48507 * 109.47239 * 210.00336 * 21 19 17 24 24 H 1.48503 * 109.47099 * 330.00067 * 21 19 17 25 25 C 1.46934 * 118.76173 * 53.55371 * 16 15 14 26 26 C 1.53036 * 109.46334 * 206.68060 * 13 12 10 27 27 C 1.53000 * 109.47193 * 300.00070 * 10 9 8 28 28 C 1.52995 * 109.47299 * 59.99510 * 27 10 9 29 29 H 1.09004 * 109.46750 * 60.00339 * 28 27 10 30 30 C 1.53000 * 109.47299 * 180.02562 * 28 27 10 31 31 H 1.09001 * 109.47178 * 300.00925 * 1 2 3 32 32 H 1.09000 * 109.46796 * 60.00227 * 1 2 3 33 33 H 1.08992 * 109.47364 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47178 * 239.99074 * 2 1 3 35 35 H 1.09012 * 109.46789 * 119.99393 * 2 1 3 36 36 H 1.08998 * 109.46721 * 60.00841 * 8 6 4 37 37 H 1.08996 * 109.47288 * 300.00360 * 8 6 4 38 38 H 1.08996 * 109.47499 * 300.00301 * 9 8 6 39 39 H 1.08999 * 109.47057 * 180.02562 * 9 8 6 40 40 H 1.00910 * 111.00256 * 210.25120 * 12 10 9 41 41 H 1.09000 * 109.44657 * 326.65035 * 13 12 10 42 42 H 1.09003 * 109.49535 * 301.34058 * 14 13 12 43 43 H 1.08999 * 109.49599 * 61.40073 * 14 13 12 44 44 H 1.08998 * 109.58737 * 65.16728 * 15 14 13 45 45 H 1.09003 * 109.58918 * 185.59215 * 15 14 13 46 46 H 0.96996 * 119.99893 * 179.97438 * 20 19 17 47 47 H 1.08998 * 109.58097 * 186.62557 * 25 16 15 48 48 H 1.09003 * 109.58557 * 66.20525 * 25 16 15 49 49 H 1.09001 * 109.49757 * 298.56537 * 26 13 12 50 50 H 1.08995 * 109.50174 * 58.62703 * 26 13 12 51 51 H 1.09001 * 109.47344 * 180.02562 * 27 10 9 52 52 H 1.09004 * 109.46942 * 299.99967 * 27 10 9 53 53 H 1.08993 * 109.47467 * 180.02562 * 30 28 27 54 54 H 1.09001 * 109.47344 * 300.00770 * 30 28 27 55 55 H 1.09004 * 109.46942 * 60.00457 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5865 -0.0005 6 6 3.9208 2.9373 -0.0012 7 1 3.5853 3.4697 0.8888 8 6 3.4489 3.6839 -1.2505 9 6 4.0333 5.0979 -1.2508 10 6 5.5612 5.0183 -1.2509 11 1 5.9776 6.0256 -1.2516 12 7 6.0140 4.3011 -2.4503 13 6 6.1537 5.2171 -3.5902 14 6 7.5473 5.8494 -3.5684 15 6 7.6780 6.8297 -4.7383 16 7 7.3546 6.1233 -5.9855 17 6 8.2278 6.1353 -7.0400 18 1 9.2886 6.2312 -6.8616 19 6 7.7496 6.0242 -8.3385 20 7 6.4736 6.2266 -8.5894 21 14 8.9172 5.5874 -9.7297 22 1 8.9695 4.1118 -9.8872 23 1 8.4354 6.2034 -10.9922 24 1 10.2751 6.1001 -9.4156 25 6 6.0765 5.4045 -6.0798 26 6 5.9646 4.4400 -4.8949 27 6 6.0332 4.2717 -0.0017 28 6 5.4488 2.8577 -0.0013 29 1 5.7848 2.3255 -0.8913 30 6 5.9202 2.1113 1.2483 31 1 -0.3633 0.5140 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.8934 -0.5140 -0.8899 35 1 1.8933 -0.5138 0.8902 36 1 2.3605 3.7410 -1.2501 37 1 3.7845 3.1514 -2.1404 38 1 3.6973 5.6301 -0.3609 39 1 3.6967 5.6299 -2.1406 40 1 6.8775 3.8097 -2.2734 41 1 5.3986 6.0001 -3.5211 42 1 7.6900 6.3831 -2.6288 43 1 8.3024 5.0688 -3.6616 44 1 6.9853 7.6596 -4.5987 45 1 8.6993 7.2076 -4.7861 46 1 6.1396 6.1494 -9.4968 47 1 6.0416 4.8424 -7.0131 48 1 5.2529 6.1179 -6.0495 49 1 6.7346 3.6728 -4.9763 50 1 4.9811 3.9702 -4.8993 51 1 7.1217 4.2154 -0.0015 52 1 5.6971 4.8039 0.8883 53 1 5.5043 1.1038 1.2483 54 1 7.0088 2.0546 1.2487 55 1 5.5838 2.6436 2.1380 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611218209.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:08 Heat of formation + Delta-G solvation = -105.219459 kcal Electronic energy + Delta-G solvation = -31175.202823 eV Core-core repulsion = 27210.822479 eV Total energy + Delta-G solvation = -3964.380344 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.88299 -40.26609 -38.95192 -37.63629 -36.01626 -33.98401 -33.21319 -32.56464 -31.95950 -31.33159 -29.42151 -27.67239 -26.36823 -24.96526 -23.82298 -23.63395 -23.15609 -22.47038 -21.41289 -20.80327 -20.05920 -18.75588 -18.61553 -17.57993 -17.41847 -16.94127 -16.39003 -16.07014 -15.84024 -15.41836 -15.30466 -15.25278 -14.91897 -14.74861 -14.61528 -14.27252 -14.17026 -13.84469 -13.71330 -13.47858 -13.30217 -13.14947 -13.03562 -12.91018 -12.68921 -12.62681 -12.60631 -12.51570 -12.47522 -12.26564 -12.03921 -11.95005 -11.88933 -11.76551 -11.72375 -11.50999 -11.40754 -11.36762 -11.09317 -10.97115 -10.75147 -10.54210 -9.11489 -8.67117 -7.87516 -5.33796 1.21786 1.45251 1.47164 1.55564 1.74934 2.50473 3.22957 3.33316 3.57907 3.71194 3.75238 3.80920 4.00454 4.01873 4.09128 4.12911 4.18695 4.27151 4.33379 4.35583 4.43156 4.46271 4.50152 4.57341 4.64613 4.69330 4.75197 4.84967 4.86183 4.88099 4.92238 4.93040 5.00270 5.02385 5.07387 5.09238 5.15598 5.18618 5.23134 5.30827 5.31618 5.36672 5.40897 5.42292 5.45202 5.53559 5.60093 5.65501 5.66080 5.76113 6.30140 6.40533 6.63835 6.79734 7.15246 7.86848 8.38508 9.18723 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015837 B = 0.002469 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.619862 B =11339.632038 C =12180.541304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.053 3.947 3 O -0.362 6.362 4 C 0.465 3.535 5 O -0.532 6.532 6 C -0.065 4.065 7 H 0.126 0.874 8 C -0.095 4.095 9 C -0.101 4.101 10 C 0.082 3.918 11 H 0.049 0.951 12 N -0.677 5.677 13 C 0.112 3.888 14 C -0.143 4.143 15 C 0.144 3.856 16 N -0.611 5.611 17 C -0.262 4.262 18 H 0.064 0.936 19 C -0.052 4.052 20 N -0.935 5.935 21 Si 0.966 3.034 22 H -0.286 1.286 23 H -0.294 1.294 24 H -0.268 1.268 25 C 0.180 3.820 26 C -0.109 4.109 27 C -0.104 4.104 28 C -0.065 4.065 29 H 0.064 0.936 30 C -0.157 4.157 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.058 0.942 38 H 0.086 0.914 39 H 0.053 0.947 40 H 0.340 0.660 41 H 0.064 0.936 42 H 0.076 0.924 43 H 0.053 0.947 44 H 0.013 0.987 45 H 0.050 0.950 46 H 0.250 0.750 47 H 0.049 0.951 48 H -0.006 1.006 49 H 0.042 0.958 50 H 0.059 0.941 51 H 0.071 0.929 52 H 0.090 0.910 53 H 0.056 0.944 54 H 0.057 0.943 55 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.320 -7.563 24.413 27.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.021 4.021 3 O -0.279 6.279 4 C 0.310 3.690 5 O -0.421 6.421 6 C -0.083 4.083 7 H 0.143 0.857 8 C -0.132 4.132 9 C -0.139 4.139 10 C -0.028 4.028 11 H 0.067 0.933 12 N -0.308 5.308 13 C 0.002 3.998 14 C -0.184 4.184 15 C 0.018 3.982 16 N -0.335 5.335 17 C -0.393 4.393 18 H 0.082 0.918 19 C -0.247 4.247 20 N -0.581 5.581 21 Si 0.795 3.205 22 H -0.213 1.213 23 H -0.220 1.220 24 H -0.193 1.193 25 C 0.054 3.946 26 C -0.149 4.149 27 C -0.142 4.142 28 C -0.083 4.083 29 H 0.083 0.917 30 C -0.214 4.214 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.116 0.884 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.105 0.895 39 H 0.072 0.928 40 H 0.159 0.841 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.072 0.928 44 H 0.030 0.970 45 H 0.068 0.932 46 H 0.059 0.941 47 H 0.067 0.933 48 H 0.012 0.988 49 H 0.061 0.939 50 H 0.077 0.923 51 H 0.090 0.910 52 H 0.109 0.891 53 H 0.074 0.926 54 H 0.076 0.924 55 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.842 -8.077 24.113 27.268 hybrid contribution 1.312 0.032 -1.236 1.803 sum -8.530 -8.045 22.877 25.707 Atomic orbital electron populations 1.21813 0.90581 1.04237 1.03687 1.23226 0.97020 0.79622 1.02211 1.86522 1.24481 1.33283 1.83649 1.24307 0.80382 0.93371 0.70963 1.90593 1.60670 1.44409 1.46459 1.21208 0.96243 0.88267 1.02619 0.85670 1.21290 1.00173 0.96146 0.95622 1.21512 0.94280 0.95825 1.02259 1.21615 0.95842 0.95985 0.89314 0.93298 1.60665 1.36904 1.28656 1.04569 1.21225 0.95139 0.93181 0.90267 1.22515 0.98165 0.99443 0.98227 1.20985 0.97992 0.93012 0.86206 1.44325 1.19344 1.57835 1.11948 1.19500 0.89251 1.44706 0.85822 0.91804 1.25823 0.97647 1.01508 0.99717 1.70179 1.14846 1.53477 1.19608 0.85279 0.78870 0.77725 0.78660 1.21323 1.22035 1.19272 1.20563 0.85784 0.92160 0.96143 1.21906 1.00162 0.97876 0.94910 1.21742 1.00645 0.94269 0.97556 1.20841 0.91463 0.96745 0.99282 0.91737 1.22044 1.01479 1.00920 0.97000 0.90963 0.91615 0.88421 0.92109 0.91208 0.90976 0.92314 0.89543 0.92774 0.84097 0.91742 0.90553 0.92820 0.96950 0.93174 0.94128 0.93266 0.98755 0.93942 0.92269 0.91013 0.89114 0.92556 0.92367 0.91796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 10.29 71.98 0.74 -0.83 16 2 C 0.05 0.88 6.19 71.98 0.45 1.32 16 3 O -0.36 -7.42 10.12 -51.42 -0.52 -7.94 16 4 C 0.47 10.42 6.96 71.24 0.50 10.92 16 5 O -0.53 -14.70 13.41 21.97 0.29 -14.41 16 6 C -0.06 -1.14 2.16 -11.54 -0.02 -1.17 16 7 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 8 C -0.09 -1.83 4.98 30.59 0.15 -1.68 16 9 C -0.10 -1.82 5.53 30.60 0.17 -1.65 16 10 C 0.08 1.55 2.62 44.92 0.12 1.67 16 11 H 0.05 0.96 7.23 -2.39 -0.02 0.94 16 12 N -0.68 -16.67 4.60 -469.34 -2.16 -18.83 16 13 C 0.11 3.50 2.23 44.94 0.10 3.60 16 14 C -0.14 -4.59 5.31 30.67 0.16 -4.42 16 15 C 0.14 5.98 6.52 86.36 0.56 6.54 16 16 N -0.61 -31.30 2.99 -699.06 -2.09 -33.39 16 17 C -0.26 -14.77 9.58 84.04 0.81 -13.96 16 18 H 0.06 3.51 7.88 -2.91 -0.02 3.49 16 19 C -0.05 -2.95 4.93 84.86 0.42 -2.53 16 20 N -0.93 -56.52 11.19 21.65 0.24 -56.28 16 21 Si 0.97 45.80 29.58 68.60 2.03 47.83 16 22 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 23 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 24 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 25 C 0.18 8.92 5.29 86.36 0.46 9.38 16 26 C -0.11 -4.24 5.69 30.67 0.17 -4.06 16 27 C -0.10 -1.57 4.57 30.59 0.14 -1.43 16 28 C -0.06 -1.18 1.73 -10.79 -0.02 -1.20 16 29 H 0.06 1.54 7.40 -2.38 -0.02 1.52 16 30 C -0.16 -2.77 8.87 71.98 0.64 -2.13 16 31 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.10 0.67 8.14 -2.39 -0.02 0.66 16 34 H 0.06 1.11 8.13 -2.39 -0.02 1.09 16 35 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 36 H 0.07 1.31 8.11 -2.39 -0.02 1.29 16 37 H 0.06 1.47 7.60 -2.39 -0.02 1.45 16 38 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.05 1.17 7.55 -2.39 -0.02 1.15 16 40 H 0.34 8.25 7.84 -89.69 -0.70 7.55 16 41 H 0.06 2.11 7.21 -2.39 -0.02 2.09 16 42 H 0.08 2.00 7.55 -2.39 -0.02 1.99 16 43 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.05 2.05 7.93 -2.39 -0.02 2.03 16 46 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 47 H 0.05 2.79 6.08 -2.39 -0.01 2.78 16 48 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 49 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 50 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 51 H 0.07 1.06 8.12 -2.39 -0.02 1.04 16 52 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 53 H 0.06 1.25 5.52 -2.39 -0.01 1.24 16 54 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 55 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 Total: -1.00 -67.39 413.13 3.47 -63.92 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 0.14 Total: 20.73 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: 5.54 Total: -1.64 kcal Atomic # 7 Polarization: -104.49 SS G_CDS: -4.01 Total: -108.50 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.23 Total: -22.35 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -67.39 3.47 -63.92 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611218209.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.300 kcal (2) G-P(sol) polarization free energy of solvation -67.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds