Wall clock time and date at job start Tue Mar 31 2020 23:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46849 * 110.99801 * 2 1 4 4 C 1.53043 * 109.52269 * 185.83860 * 3 2 1 5 5 C 1.53112 * 109.27812 * 300.81591 * 4 3 2 6 6 C 1.52999 * 109.52581 * 297.68959 * 5 4 3 7 7 C 1.53001 * 109.52055 * 177.55683 * 5 4 3 8 8 N 1.46506 * 109.47014 * 180.12618 * 7 5 4 9 9 C 1.34774 * 119.99936 * 179.97438 * 8 7 5 10 10 O 1.21588 * 119.99887 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99875 * 180.02562 * 9 8 7 12 12 C 1.46496 * 120.00231 * 180.02562 * 11 9 8 13 13 C 1.53358 * 109.41924 * 275.12893 * 12 11 9 14 14 C 1.53188 * 109.15126 * 178.67149 * 13 12 11 15 15 N 1.46927 * 108.89428 * 54.57704 * 14 13 12 16 16 C 1.36933 * 120.63022 * 126.33925 * 15 14 13 17 17 H 1.08000 * 120.00191 * 331.82823 * 16 15 14 18 18 C 1.38816 * 120.00216 * 151.82741 * 16 15 14 19 19 N 1.31624 * 119.99356 * 343.07025 * 18 16 15 20 20 Si 1.86793 * 120.00395 * 163.07047 * 18 16 15 21 21 H 1.48493 * 109.47484 * 90.00085 * 20 18 16 22 22 H 1.48503 * 109.47169 * 210.00310 * 20 18 16 23 23 H 1.48506 * 109.47138 * 329.99723 * 20 18 16 24 24 C 1.46927 * 118.73625 * 306.32307 * 15 14 13 25 25 C 1.53041 * 109.46693 * 154.99889 * 12 11 9 26 26 C 1.53124 * 109.21279 * 57.62365 * 5 4 3 27 27 C 1.46850 * 111.00084 * 124.20313 * 2 1 3 28 28 H 1.08990 * 109.47323 * 60.00676 * 1 2 3 29 29 H 1.09004 * 109.46755 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47297 * 299.99919 * 1 2 3 31 31 H 1.08998 * 109.46563 * 65.82227 * 3 2 1 32 32 H 1.09003 * 109.44986 * 305.84763 * 3 2 1 33 33 H 1.09003 * 109.50153 * 180.87729 * 4 3 2 34 34 H 1.08994 * 109.49909 * 60.76222 * 4 3 2 35 35 H 1.08998 * 109.46914 * 299.86824 * 6 5 4 36 36 H 1.09003 * 109.47315 * 59.87400 * 6 5 4 37 37 H 1.09003 * 109.46832 * 179.87372 * 6 5 4 38 38 H 1.08996 * 109.46797 * 60.13223 * 7 5 4 39 39 H 1.08990 * 109.47453 * 300.12871 * 7 5 4 40 40 H 0.97007 * 120.00059 * 0.02562 * 8 7 5 41 41 H 0.97000 * 119.99973 * 0.02562 * 11 9 8 42 42 H 1.09005 * 109.46233 * 35.02540 * 12 11 9 43 43 H 1.08999 * 109.68305 * 58.70550 * 13 12 11 44 44 H 1.09002 * 109.46954 * 298.51328 * 13 12 11 45 45 H 1.08997 * 109.58674 * 294.71955 * 14 13 12 46 46 H 1.09000 * 109.58865 * 174.43595 * 14 13 12 47 47 H 0.96997 * 119.99488 * 180.02562 * 19 18 16 48 48 H 1.09002 * 109.58387 * 173.39335 * 24 15 14 49 49 H 1.09004 * 109.58558 * 293.67310 * 24 15 14 50 50 H 1.08998 * 109.49362 * 61.43206 * 25 12 11 51 51 H 1.08995 * 109.49667 * 301.34226 * 25 12 11 52 52 H 1.09003 * 109.50214 * 62.31824 * 26 5 4 53 53 H 1.08997 * 109.50916 * 182.43207 * 26 5 4 54 54 H 1.08994 * 109.46629 * 294.18004 * 27 2 1 55 55 H 1.09000 * 109.45875 * 54.16234 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3343 -0.1467 5 6 4.1188 0.5372 1.0144 6 6 3.7971 1.2377 2.3360 7 6 5.6361 0.4452 0.8405 8 7 6.2093 -0.3202 1.9504 9 6 7.5392 -0.5316 2.0074 10 8 8.2632 -0.0867 1.1378 11 7 8.0664 -1.2361 3.0282 12 6 9.5120 -1.4654 3.0904 13 6 9.8701 -2.6945 2.2460 14 6 11.3863 -2.9090 2.2884 15 7 11.8159 -2.9925 3.6910 16 6 12.5479 -4.0616 4.1339 17 1 12.4444 -5.0232 3.6534 18 6 13.4232 -3.9094 5.2006 19 7 13.8054 -2.7058 5.5716 20 14 14.0584 -5.4126 6.1094 21 1 15.3127 -5.8845 5.4697 22 1 14.3284 -5.0574 7.5258 23 1 13.0391 -6.4912 6.0553 24 6 11.4454 -1.9069 4.6091 25 6 9.9288 -1.7019 4.5439 26 6 3.5183 -0.8714 1.0226 27 6 1.9953 -0.7707 1.1338 28 1 -0.3633 0.5137 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.7324 1.8609 0.9375 32 1 1.5633 1.9255 -0.8331 33 1 3.9099 2.3513 -0.1310 34 1 3.7813 0.8568 -1.0906 35 1 4.2230 2.2410 2.3285 36 1 2.7160 1.3028 2.4590 37 1 4.2232 0.6684 3.1621 38 1 6.0623 1.4483 0.8326 39 1 5.8643 -0.0540 -0.1011 40 1 5.6316 -0.6755 2.6440 41 1 7.4887 -1.5914 3.7217 42 1 10.0353 -0.5926 2.7000 43 1 9.5537 -2.5364 1.2149 44 1 9.3669 -3.5726 2.6508 45 1 11.8874 -2.0721 1.8020 46 1 11.6388 -3.8357 1.7731 47 1 14.4172 -2.5994 6.3166 48 1 11.7347 -2.1734 5.6257 49 1 11.9534 -0.9889 4.3134 50 1 9.4249 -2.5892 4.9270 51 1 9.6522 -0.8371 5.1469 52 1 3.7816 -1.3846 0.0976 53 1 3.9102 -1.4292 1.8730 54 1 1.7325 -0.2707 2.0660 55 1 1.5636 -1.7715 1.1242 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611562426.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:03 Heat of formation + Delta-G solvation = -37.178493 kcal Electronic energy + Delta-G solvation = -30376.733819 eV Core-core repulsion = 26447.596704 eV Total energy + Delta-G solvation = -3929.137115 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.43507 -40.52324 -39.04591 -36.93249 -35.90492 -34.44482 -33.65122 -31.84599 -31.75349 -31.09908 -29.37752 -27.98356 -26.79867 -25.57541 -24.27734 -23.93109 -23.58238 -22.40269 -21.72373 -21.02640 -19.59079 -19.17015 -18.60301 -17.46987 -16.83785 -16.66741 -16.47778 -16.05445 -15.93104 -15.69047 -15.55342 -15.42057 -15.34541 -15.09045 -14.74641 -14.67835 -14.41326 -14.26014 -14.01835 -13.41675 -13.32778 -13.18972 -13.00493 -12.99108 -12.89569 -12.60110 -12.52894 -12.50267 -12.39998 -12.21984 -12.01949 -12.01123 -11.85891 -11.55611 -11.52931 -11.40695 -11.33974 -11.18508 -11.12993 -10.54849 -10.27064 -9.68896 -9.18580 -8.69650 -7.86943 -5.32412 1.48983 1.49970 1.60202 1.74793 2.22123 2.52896 3.03600 3.26661 3.35584 3.61769 3.67825 3.70935 3.81878 3.92237 4.08283 4.21135 4.23869 4.36047 4.36521 4.43037 4.46897 4.48000 4.60299 4.66524 4.68372 4.71608 4.77762 4.79078 4.81316 4.83689 4.88349 4.95455 5.03719 5.04904 5.06619 5.07614 5.08625 5.12691 5.17344 5.26393 5.30792 5.33017 5.47932 5.49439 5.55251 5.63463 5.65765 5.71623 6.07445 6.17664 6.18160 6.40052 7.15402 7.16866 7.65903 7.84900 8.38259 9.20314 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.030404 B = 0.001858 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.724886 B =15067.170457 C =15289.599143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.559 5.559 3 C 0.058 3.942 4 C -0.103 4.103 5 C -0.062 4.062 6 C -0.142 4.142 7 C 0.154 3.846 8 N -0.728 5.728 9 C 0.699 3.301 10 O -0.639 6.639 11 N -0.727 5.727 12 C 0.182 3.818 13 C -0.123 4.123 14 C 0.144 3.856 15 N -0.608 5.608 16 C -0.263 4.263 17 H 0.067 0.933 18 C -0.051 4.051 19 N -0.936 5.936 20 Si 0.970 3.030 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.269 1.269 24 C 0.178 3.822 25 C -0.127 4.127 26 C -0.104 4.104 27 C 0.056 3.944 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.027 0.973 31 H 0.041 0.959 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.050 0.950 40 H 0.408 0.592 41 H 0.409 0.591 42 H 0.053 0.947 43 H 0.056 0.944 44 H 0.066 0.934 45 H 0.006 0.994 46 H 0.057 0.943 47 H 0.251 0.749 48 H 0.064 0.936 49 H -0.006 1.006 50 H 0.071 0.929 51 H 0.076 0.924 52 H 0.060 0.940 53 H 0.075 0.925 54 H 0.042 0.958 55 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.668 7.335 -6.496 32.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.284 5.284 3 C -0.070 4.070 4 C -0.142 4.142 5 C -0.063 4.063 6 C -0.199 4.199 7 C 0.030 3.970 8 N -0.385 5.385 9 C 0.398 3.602 10 O -0.520 6.520 11 N -0.381 5.381 12 C 0.076 3.924 13 C -0.163 4.163 14 C 0.018 3.982 15 N -0.332 5.332 16 C -0.393 4.393 17 H 0.085 0.915 18 C -0.246 4.246 19 N -0.582 5.582 20 Si 0.797 3.203 21 H -0.214 1.214 22 H -0.217 1.217 23 H -0.194 1.194 24 C 0.052 3.948 25 C -0.166 4.166 26 C -0.141 4.141 27 C -0.071 4.071 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.246 0.754 41 H 0.245 0.755 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.085 0.915 45 H 0.024 0.976 46 H 0.075 0.925 47 H 0.060 0.940 48 H 0.082 0.918 49 H 0.012 0.988 50 H 0.090 0.910 51 H 0.095 0.905 52 H 0.079 0.921 53 H 0.094 0.906 54 H 0.060 0.940 55 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -29.771 7.552 -7.595 31.639 hybrid contribution 0.262 -0.424 1.618 1.693 sum -29.508 7.129 -5.977 30.940 Atomic orbital electron populations 1.22369 0.86470 1.02465 1.00969 1.61926 1.08368 1.14191 1.43888 1.22100 0.94809 0.89008 1.01045 1.21564 0.94679 1.00343 0.97581 1.20753 0.91871 0.96608 0.97023 1.21948 1.01954 1.00450 0.95556 1.21188 0.92515 0.95022 0.88323 1.44973 1.04700 1.59419 1.29436 1.16170 0.82842 0.79016 0.82133 1.90899 1.60985 1.58101 1.42025 1.45113 1.08391 1.57799 1.26841 1.20528 0.79065 0.96763 0.96015 1.22231 0.96907 0.98004 0.99172 1.20961 0.92897 0.98423 0.85922 1.44339 1.61415 1.22928 1.04494 1.19511 1.16241 0.89154 1.14421 0.91517 1.25830 0.97472 0.98958 1.02326 1.70190 1.35888 1.22419 1.29660 0.85253 0.78142 0.79413 0.77464 1.21397 1.21742 1.19355 1.20574 0.90216 0.88749 0.95285 1.22241 0.98062 1.01845 0.94468 1.21623 0.94584 0.95446 1.02492 1.22119 0.94998 0.98421 0.91604 0.90949 0.91056 0.95405 0.94077 0.90227 0.90426 0.91600 0.92484 0.91614 0.92064 0.92772 0.93128 0.75433 0.75493 0.92826 0.92490 0.91545 0.97641 0.92477 0.94022 0.91776 0.98806 0.91037 0.90511 0.92090 0.90603 0.93979 0.90495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.59 127.69 1.22 1.45 16 2 N -0.56 -6.70 4.91 -922.56 -4.53 -11.23 16 3 C 0.06 0.62 5.22 86.33 0.45 1.07 16 4 C -0.10 -1.23 4.88 30.65 0.15 -1.08 16 5 C -0.06 -0.76 0.53 -52.10 -0.03 -0.79 16 6 C -0.14 -1.46 7.73 71.98 0.56 -0.91 16 7 C 0.15 2.86 4.57 86.38 0.39 3.26 16 8 N -0.73 -14.16 4.98 -478.54 -2.39 -16.55 16 9 C 0.70 20.29 8.53 179.06 1.53 21.82 16 10 O -0.64 -25.14 16.01 -3.99 -0.06 -25.20 16 11 N -0.73 -19.38 5.08 -457.18 -2.32 -21.71 16 12 C 0.18 6.33 2.42 45.13 0.11 6.44 16 13 C -0.12 -4.52 5.68 30.78 0.17 -4.35 16 14 C 0.14 6.41 6.50 86.36 0.56 6.97 16 15 N -0.61 -31.08 2.99 -699.11 -2.09 -33.17 16 16 C -0.26 -14.55 9.58 84.04 0.81 -13.75 16 17 H 0.07 3.59 7.88 -2.91 -0.02 3.57 16 18 C -0.05 -2.82 4.92 84.86 0.42 -2.41 16 19 N -0.94 -55.41 11.20 21.65 0.24 -55.17 16 20 Si 0.97 44.63 29.59 68.60 2.03 46.66 16 21 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 22 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 23 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 24 C 0.18 8.58 5.30 86.36 0.46 9.04 16 25 C -0.13 -4.52 5.55 30.67 0.17 -4.35 16 26 C -0.10 -1.23 4.68 30.65 0.14 -1.09 16 27 C 0.06 0.61 5.22 86.33 0.45 1.06 16 28 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.07 0.59 8.09 -2.38 -0.02 0.57 16 30 H 0.03 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.04 0.41 6.51 -2.39 -0.02 0.39 16 32 H 0.08 0.77 8.12 -2.39 -0.02 0.75 16 33 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.07 0.60 4.93 -2.39 -0.01 0.59 16 37 H 0.06 0.58 6.87 -2.39 -0.02 0.56 16 38 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.41 5.38 6.21 -92.70 -0.58 4.80 16 41 H 0.41 7.96 8.62 -92.71 -0.80 7.16 16 42 H 0.05 2.20 7.58 -2.38 -0.02 2.18 16 43 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 45 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 46 H 0.06 2.46 7.93 -2.39 -0.02 2.45 16 47 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 48 H 0.06 3.43 6.06 -2.39 -0.01 3.42 16 49 H -0.01 -0.32 8.14 -2.38 -0.02 -0.34 16 50 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 51 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 52 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 53 H 0.08 0.77 6.95 -2.39 -0.02 0.75 16 54 H 0.04 0.41 6.52 -2.39 -0.02 0.40 16 55 H 0.08 0.79 8.09 -2.39 -0.02 0.77 16 Total: -1.00 -70.79 409.62 -2.07 -72.86 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: -0.50 Total: 21.13 kcal Atomic # 6 Polarization: 14.81 SS G_CDS: 7.57 Total: 22.38 kcal Atomic # 7 Polarization: -126.73 SS G_CDS: -11.09 Total: -137.82 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.06 Total: -25.20 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -70.79 -2.07 -72.86 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611562426.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.681 kcal (2) G-P(sol) polarization free energy of solvation -70.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds