Wall clock time and date at job start Tue Mar 31 2020 23:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46607 * 2 1 4 4 C 1.52994 * 109.46791 * 119.99688 * 2 1 3 5 5 H 1.09000 * 109.51695 * 56.22959 * 4 2 1 6 6 C 1.53239 * 109.49873 * 296.15858 * 4 2 1 7 7 N 1.47077 * 108.52587 * 186.21475 * 6 4 2 8 8 C 1.34781 * 120.87946 * 231.21309 * 7 6 4 9 9 O 1.21585 * 120.00237 * 4.96352 * 8 7 6 10 10 N 1.34778 * 119.99960 * 184.96930 * 8 7 6 11 11 C 1.46497 * 120.00136 * 175.03272 * 10 8 7 12 12 C 1.53042 * 109.45935 * 275.03227 * 11 10 8 13 13 C 1.53193 * 109.31291 * 178.60260 * 12 11 10 14 14 N 1.46928 * 108.76835 * 54.64785 * 13 12 11 15 15 C 1.36940 * 120.63137 * 126.40453 * 14 13 12 16 16 H 1.07995 * 119.99917 * 323.98485 * 15 14 13 17 17 C 1.38805 * 119.99895 * 143.98145 * 15 14 13 18 18 N 1.31620 * 120.00295 * 359.23959 * 17 15 14 19 19 Si 1.86798 * 119.99994 * 179.23491 * 17 15 14 20 20 H 1.48504 * 109.47109 * 90.00180 * 19 17 15 21 21 H 1.48506 * 109.47215 * 210.00116 * 19 17 15 22 22 H 1.48500 * 109.47377 * 330.00373 * 19 17 15 23 23 C 1.46930 * 118.73886 * 306.38863 * 14 13 12 24 24 C 1.53034 * 109.46190 * 154.97203 * 11 10 8 25 25 C 1.47070 * 118.23784 * 51.18422 * 7 6 4 26 26 C 1.53246 * 108.52361 * 308.81558 * 25 7 6 27 27 N 1.46899 * 109.33361 * 53.83023 * 26 25 7 28 28 C 1.46898 * 110.99633 * 172.74644 * 27 26 25 29 29 H 1.09006 * 109.46810 * 185.13659 * 1 2 3 30 30 H 1.08998 * 109.47522 * 305.13657 * 1 2 3 31 31 H 1.09008 * 109.47123 * 65.14221 * 1 2 3 32 32 H 1.08996 * 109.47115 * 240.00389 * 2 1 3 33 33 H 1.09000 * 109.46768 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.47463 * 299.99743 * 3 2 1 35 35 H 1.09001 * 109.46960 * 59.99915 * 3 2 1 36 36 H 1.09001 * 109.63076 * 305.92736 * 6 4 2 37 37 H 1.09006 * 109.62450 * 66.50222 * 6 4 2 38 38 H 0.97005 * 119.99771 * 355.03871 * 10 8 7 39 39 H 1.09001 * 109.45773 * 35.00035 * 11 10 8 40 40 H 1.09003 * 109.49645 * 298.56291 * 12 11 10 41 41 H 1.08995 * 109.50310 * 58.66015 * 12 11 10 42 42 H 1.08997 * 109.59581 * 294.86318 * 13 12 11 43 43 H 1.09000 * 109.70810 * 174.49944 * 13 12 11 44 44 H 0.96996 * 120.00479 * 179.97438 * 18 17 15 45 45 H 1.08991 * 109.58710 * 293.81697 * 23 14 13 46 46 H 1.09000 * 109.70453 * 173.46104 * 23 14 13 47 47 H 1.08998 * 109.49689 * 301.34109 * 24 11 10 48 48 H 1.09002 * 109.49383 * 61.43573 * 24 11 10 49 49 H 1.09004 * 109.62915 * 189.11086 * 25 7 6 50 50 H 1.08998 * 109.63203 * 68.52931 * 25 7 6 51 51 H 1.08996 * 109.49043 * 293.87444 * 26 25 7 52 52 H 1.09001 * 109.51421 * 173.80036 * 26 25 7 53 53 H 1.09001 * 109.47307 * 190.09611 * 28 27 26 54 54 H 1.09009 * 109.47408 * 310.09212 * 28 27 26 55 55 H 1.09002 * 109.47314 * 70.09361 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6228 -1.7276 1.2845 6 6 1.6100 0.0545 2.4989 7 7 2.2345 -0.5705 3.6747 8 6 1.4963 -0.9170 4.7479 9 8 0.2867 -0.7976 4.7180 10 7 2.0991 -1.3958 5.8542 11 6 1.3102 -1.6698 7.0578 12 6 1.1605 -0.3833 7.8732 13 6 0.3058 -0.6657 9.1128 14 7 0.9040 -1.7840 9.8547 15 6 1.2030 -1.6581 11.1851 16 1 1.5629 -0.7158 11.5709 17 6 1.0432 -2.7417 12.0378 18 7 0.5903 -3.8857 11.5706 19 14 1.4713 -2.5763 13.8486 20 1 0.2734 -2.1246 14.6011 21 1 1.9189 -3.8914 14.3736 22 1 2.5618 -1.5814 14.0106 23 6 1.1751 -3.0400 9.1421 24 6 2.0197 -2.7309 7.9020 25 6 3.6857 -0.8078 3.6482 26 6 4.0340 -1.5497 2.3533 27 7 3.5062 -0.7994 1.2059 28 6 3.9649 -1.3840 -0.0613 29 1 -0.3633 -1.0236 0.0920 30 1 -0.3634 0.5914 0.8404 31 1 -0.3634 0.4320 -0.9325 32 1 1.8933 -0.5137 -0.8900 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6765 1.9564 0.8900 36 1 1.9379 1.0908 2.4176 37 1 0.5250 0.0176 2.5975 38 1 3.0553 -1.5588 5.8535 39 1 0.3239 -2.0343 6.7703 40 1 2.1449 -0.0318 8.1822 41 1 0.6761 0.3795 7.2637 42 1 -0.7062 -0.9302 8.8065 43 1 0.2757 0.2196 9.7479 44 1 0.4790 -4.6430 12.1663 45 1 0.2340 -3.4981 8.8382 46 1 1.7199 -3.7224 9.7944 47 1 2.1471 -3.6391 7.3129 48 1 2.9960 -2.3570 8.2107 49 1 3.9732 -1.4150 4.5066 50 1 4.2133 0.1455 3.6773 51 1 3.5891 -2.5445 2.3731 52 1 5.1168 -1.6370 2.2637 53 1 3.7127 -0.7138 -0.8830 54 1 5.0452 -1.5254 -0.0263 55 1 3.4773 -2.3467 -0.2149 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000617017678.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:24 Heat of formation + Delta-G solvation = -16.576984 kcal Electronic energy + Delta-G solvation = -31219.883959 eV Core-core repulsion = 27291.640192 eV Total energy + Delta-G solvation = -3928.243766 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.71636 -40.15994 -38.91226 -36.50125 -36.01142 -35.27826 -33.86802 -31.81895 -31.26997 -30.81587 -29.22413 -28.00124 -26.91321 -25.38657 -25.25461 -23.90624 -23.60004 -22.71331 -21.18846 -20.83006 -19.85718 -19.31673 -18.52029 -17.67045 -16.91999 -16.67902 -16.45755 -16.22448 -16.05498 -15.61964 -15.59738 -15.32653 -15.22346 -14.87848 -14.71180 -14.67262 -14.18579 -14.13859 -13.99866 -13.68276 -13.42450 -13.23349 -12.96945 -12.87719 -12.83561 -12.72556 -12.60574 -12.54151 -12.41040 -12.16343 -12.04402 -12.00439 -11.88595 -11.80881 -11.59422 -11.55329 -11.44329 -11.35608 -11.11460 -10.56009 -10.16840 -9.62459 -9.23707 -8.57508 -7.87458 -5.44152 1.48218 1.49483 1.56838 1.58719 2.10432 2.50583 2.85139 2.89043 3.30652 3.67604 3.70809 3.78874 3.87589 3.96234 4.05803 4.10053 4.12581 4.24191 4.30694 4.34172 4.40437 4.47047 4.54946 4.62828 4.64885 4.65919 4.72631 4.75876 4.82324 4.84149 4.85427 4.87250 5.00538 5.01286 5.05195 5.05988 5.07805 5.16208 5.17208 5.23340 5.29934 5.40850 5.47242 5.50132 5.54526 5.59580 5.65192 5.74070 5.87388 6.02779 6.10752 6.44992 6.95715 7.17451 7.54270 7.82670 8.39577 9.18626 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.027746 B = 0.002208 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.915525 B =12675.370776 C =13087.171606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.084 4.084 3 C -0.138 4.138 4 C 0.084 3.916 5 H 0.023 0.977 6 C 0.136 3.864 7 N -0.631 5.631 8 C 0.702 3.298 9 O -0.636 6.636 10 N -0.727 5.727 11 C 0.180 3.820 12 C -0.122 4.122 13 C 0.146 3.854 14 N -0.610 5.610 15 C -0.266 4.266 16 H 0.066 0.934 17 C -0.045 4.045 18 N -0.935 5.935 19 Si 0.972 3.028 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.267 1.267 23 C 0.180 3.820 24 C -0.128 4.128 25 C 0.111 3.889 26 C 0.043 3.957 27 N -0.535 5.535 28 C 0.022 3.978 29 H 0.045 0.955 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.049 0.951 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.406 0.594 39 H 0.053 0.947 40 H 0.066 0.934 41 H 0.055 0.945 42 H 0.005 0.995 43 H 0.059 0.941 44 H 0.252 0.748 45 H -0.009 1.009 46 H 0.068 0.932 47 H 0.073 0.927 48 H 0.070 0.930 49 H 0.093 0.907 50 H 0.090 0.910 51 H 0.026 0.974 52 H 0.114 0.886 53 H 0.082 0.918 54 H 0.082 0.918 55 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.793 7.063 -26.714 29.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.103 4.103 3 C -0.195 4.195 4 C -0.025 4.025 5 H 0.041 0.959 6 C 0.013 3.987 7 N -0.368 5.368 8 C 0.403 3.597 9 O -0.517 6.517 10 N -0.383 5.383 11 C 0.075 3.925 12 C -0.162 4.162 13 C 0.020 3.980 14 N -0.334 5.334 15 C -0.396 4.396 16 H 0.083 0.917 17 C -0.240 4.240 18 N -0.581 5.581 19 Si 0.799 3.201 20 H -0.213 1.213 21 H -0.218 1.218 22 H -0.191 1.191 23 C 0.054 3.946 24 C -0.167 4.167 25 C -0.011 4.011 26 C -0.086 4.086 27 N -0.260 5.260 28 C -0.125 4.125 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.104 0.896 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.245 0.755 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.023 0.977 43 H 0.077 0.923 44 H 0.061 0.939 45 H 0.010 0.990 46 H 0.086 0.914 47 H 0.091 0.909 48 H 0.089 0.911 49 H 0.111 0.889 50 H 0.108 0.892 51 H 0.044 0.956 52 H 0.132 0.868 53 H 0.100 0.900 54 H 0.101 0.899 55 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 10.103 7.488 -26.593 29.416 hybrid contribution -0.350 -1.295 1.179 1.786 sum 9.753 6.193 -25.414 27.917 Atomic orbital electron populations 1.21896 0.95021 1.01474 1.02475 1.21163 0.95435 0.97560 0.96152 1.21778 1.01904 0.94276 1.01520 1.21968 0.88130 0.97093 0.95345 0.95864 1.21755 0.98099 0.96736 0.82097 1.47422 1.08860 1.64688 1.15859 1.16070 0.84788 0.78032 0.80784 1.90871 1.14198 1.63135 1.83521 1.45309 1.12039 1.69725 1.11224 1.20511 0.94254 0.95094 0.82681 1.22178 1.00702 0.96965 0.96395 1.20964 0.93497 0.91214 0.92337 1.44250 1.71252 1.11162 1.06704 1.19465 1.37456 0.98118 0.84585 0.91678 1.26098 0.99175 0.96709 1.02055 1.70093 1.50280 1.02354 1.35337 0.85218 0.77901 0.76874 0.80089 1.21346 1.21774 1.19139 1.20586 0.94948 0.88336 0.90706 1.22277 0.99844 0.97737 0.96867 1.21963 0.78984 1.01854 0.98322 1.22537 1.01873 0.94212 0.89947 1.61974 1.08288 1.52539 1.03159 1.22484 1.01261 0.97524 0.91246 0.93575 0.93158 0.90937 0.89625 0.91473 0.92108 0.93225 0.89820 0.90903 0.75538 0.92898 0.91533 0.92654 0.97656 0.92297 0.93922 0.99041 0.91373 0.90882 0.91118 0.88915 0.89227 0.95604 0.86784 0.89965 0.89938 0.96193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 8.80 71.98 0.63 -1.57 16 2 C -0.08 -1.12 2.25 -10.79 -0.02 -1.14 16 3 C -0.14 -1.65 8.61 71.98 0.62 -1.03 16 4 C 0.08 1.45 1.77 44.99 0.08 1.53 16 5 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 6 C 0.14 2.98 5.17 86.35 0.45 3.42 16 7 N -0.63 -14.91 3.01 -835.93 -2.52 -17.42 16 8 C 0.70 22.29 8.27 179.05 1.48 23.77 16 9 O -0.64 -26.14 15.43 -3.98 -0.06 -26.20 16 10 N -0.73 -21.00 4.99 -457.69 -2.28 -23.28 16 11 C 0.18 6.49 2.46 45.02 0.11 6.60 16 12 C -0.12 -4.57 5.65 30.67 0.17 -4.40 16 13 C 0.15 6.54 6.52 86.36 0.56 7.10 16 14 N -0.61 -31.37 2.98 -699.10 -2.09 -33.45 16 15 C -0.27 -14.70 9.55 84.03 0.80 -13.90 16 16 H 0.07 3.50 7.83 -2.91 -0.02 3.47 16 17 C -0.04 -2.50 5.23 84.86 0.44 -2.05 16 18 N -0.94 -55.23 10.88 21.65 0.24 -54.99 16 19 Si 0.97 44.61 29.55 68.60 2.03 46.64 16 20 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 21 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 22 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 23 C 0.18 8.81 5.22 86.36 0.45 9.26 16 24 C -0.13 -4.69 5.55 30.67 0.17 -4.52 16 25 C 0.11 1.72 6.54 86.35 0.56 2.29 16 26 C 0.04 0.57 5.62 86.39 0.49 1.05 16 27 N -0.53 -7.36 4.13 -896.08 -3.70 -11.06 16 28 C 0.02 0.22 8.85 127.69 1.13 1.36 16 29 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.05 0.85 6.95 -2.39 -0.02 0.83 16 31 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.09 0.97 6.23 -2.39 -0.01 0.95 16 33 H 0.07 0.81 7.71 -2.39 -0.02 0.79 16 34 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.05 0.68 6.23 -2.39 -0.01 0.67 16 36 H 0.08 1.68 6.05 -2.39 -0.01 1.66 16 37 H 0.07 1.97 5.90 -2.38 -0.01 1.95 16 38 H 0.41 9.01 6.14 -92.70 -0.57 8.44 16 39 H 0.05 2.25 7.51 -2.39 -0.02 2.23 16 40 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 41 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 43 H 0.06 2.55 7.93 -2.39 -0.02 2.53 16 44 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 45 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 46 H 0.07 3.70 6.15 -2.39 -0.01 3.68 16 47 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 48 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 49 H 0.09 1.21 5.74 -2.38 -0.01 1.20 16 50 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 51 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 52 H 0.11 0.94 7.99 -2.39 -0.02 0.93 16 53 H 0.08 0.70 6.47 -2.39 -0.02 0.69 16 54 H 0.08 0.61 7.97 -2.38 -0.02 0.59 16 55 H 0.02 0.23 8.12 -2.39 -0.02 0.21 16 Total: -1.00 -70.39 405.28 0.04 -70.35 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: 0.29 Total: 21.65 kcal Atomic # 6 Polarization: 19.65 SS G_CDS: 8.13 Total: 27.78 kcal Atomic # 7 Polarization: -129.86 SS G_CDS: -10.35 Total: -140.21 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -0.06 Total: -26.20 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -70.39 0.04 -70.35 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617017678.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.771 kcal (2) G-P(sol) polarization free energy of solvation -70.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds