Wall clock time and date at job start Tue Mar 31 2020 22:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00163 * 2 1 4 4 C 1.52999 * 109.47073 * 210.00518 * 3 2 1 5 5 C 1.53000 * 109.47055 * 299.99268 * 4 3 2 6 6 C 1.52999 * 109.47581 * 300.00666 * 5 4 3 7 7 C 1.53000 * 109.47295 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.46966 * 174.99630 * 7 6 5 9 9 O 1.21281 * 119.99956 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00195 * 179.97438 * 8 7 6 11 11 C 1.46499 * 120.00180 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.46919 * 180.02562 * 11 10 8 13 13 C 1.53047 * 109.45650 * 295.02575 * 12 11 10 14 14 C 1.53194 * 109.30956 * 178.60373 * 13 12 11 15 15 N 1.46930 * 108.76886 * 54.65532 * 14 13 12 16 16 C 1.36930 * 120.63273 * 126.40173 * 15 14 13 17 17 H 1.08002 * 120.00009 * 332.61566 * 16 15 14 18 18 C 1.38810 * 120.00135 * 152.60926 * 16 15 14 19 19 N 1.31626 * 120.00011 * 159.34419 * 18 16 15 20 20 Si 1.86804 * 119.99940 * 339.35062 * 18 16 15 21 21 H 1.48499 * 109.47230 * 92.94208 * 20 18 16 22 22 H 1.48500 * 109.46886 * 212.93939 * 20 18 16 23 23 H 1.48496 * 109.46737 * 332.93950 * 20 18 16 24 24 C 1.46932 * 118.73747 * 306.38583 * 15 14 13 25 25 C 1.53043 * 109.45832 * 174.97401 * 12 11 10 26 26 C 1.52999 * 109.47223 * 59.99289 * 6 5 4 27 27 C 1.52993 * 109.47170 * 89.99983 * 3 2 1 28 28 H 1.08995 * 109.47131 * 60.00066 * 1 2 3 29 29 H 1.09000 * 109.46805 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46641 * 299.99862 * 1 2 3 31 31 H 1.09007 * 109.46778 * 329.99962 * 3 2 1 32 32 H 1.09003 * 109.46894 * 179.97438 * 4 3 2 33 33 H 1.08997 * 109.47510 * 59.99714 * 4 3 2 34 34 H 1.08994 * 109.47289 * 180.02562 * 5 4 3 35 35 H 1.09003 * 109.46768 * 60.00536 * 5 4 3 36 36 H 1.09003 * 109.46964 * 299.99750 * 6 5 4 37 37 H 1.08994 * 109.47085 * 294.99850 * 7 6 5 38 38 H 1.09007 * 109.46637 * 54.99983 * 7 6 5 39 39 H 0.97006 * 119.99507 * 0.02562 * 10 8 7 40 40 H 1.08994 * 109.47300 * 300.00006 * 11 10 8 41 41 H 1.08998 * 109.47435 * 60.00507 * 11 10 8 42 42 H 1.09000 * 109.46479 * 54.99912 * 12 11 10 43 43 H 1.08994 * 109.49990 * 298.56429 * 13 12 11 44 44 H 1.08998 * 109.49982 * 58.66803 * 13 12 11 45 45 H 1.09001 * 109.59964 * 294.86832 * 14 13 12 46 46 H 1.09001 * 109.70611 * 174.50870 * 14 13 12 47 47 H 0.97002 * 119.99923 * 179.97438 * 19 18 16 48 48 H 1.08994 * 109.58466 * 293.81983 * 24 15 14 49 49 H 1.08999 * 109.70146 * 173.46168 * 24 15 14 50 50 H 1.08995 * 109.49740 * 301.33459 * 25 12 11 51 51 H 1.09007 * 109.49941 * 61.43617 * 25 12 11 52 52 H 1.09003 * 109.46774 * 60.00345 * 26 6 5 53 53 H 1.08997 * 109.47263 * 180.02562 * 26 6 5 54 54 H 1.09003 * 109.47162 * 180.02562 * 27 3 2 55 55 H 1.08994 * 109.47383 * 300.00059 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.3589 1.2632 -0.7214 5 6 4.2928 0.2893 -0.0001 6 6 4.5003 0.7551 1.4424 7 6 5.4336 -0.2192 2.1638 8 6 5.7361 0.3039 3.5443 9 8 5.2524 1.3525 3.9149 10 7 6.5434 -0.3940 4.3675 11 6 6.8370 0.1143 5.7098 12 6 7.7704 -0.8600 6.4311 13 6 7.0474 -2.1909 6.6505 14 6 7.9964 -3.1751 7.3416 15 7 8.5059 -2.5554 8.5725 16 6 8.3933 -3.1989 9.7759 17 1 7.5916 -3.9041 9.9383 18 6 9.3097 -2.9450 10.7872 19 7 9.0027 -3.2189 12.0375 20 14 10.9785 -2.2145 10.3736 21 1 10.9131 -0.7352 10.4867 22 1 11.9963 -2.7386 11.3194 23 1 11.3525 -2.5889 8.9862 24 6 9.1389 -1.2321 8.4875 25 6 8.1772 -0.2698 7.7833 26 6 3.1516 0.7974 2.1637 27 6 2.2177 1.7713 1.4424 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.3450 1.9994 -0.5139 32 1 3.8020 2.2591 -0.7217 33 1 3.2111 0.9313 -1.7490 34 1 5.2537 0.2595 -0.5137 35 1 3.8494 -0.7065 -0.0001 36 1 4.9436 1.7509 1.4424 37 1 4.9516 -1.1936 2.2420 38 1 6.3619 -0.3172 1.6008 39 1 6.9299 -1.2329 4.0712 40 1 7.3192 1.0886 5.6319 41 1 5.9085 0.2123 6.2724 42 1 8.6609 -1.0262 5.8248 43 1 6.1706 -2.0296 7.2776 44 1 6.7372 -2.5994 5.6888 45 1 8.8291 -3.4074 6.6777 46 1 7.4597 -4.0911 7.5888 47 1 9.6432 -3.0418 12.7441 48 1 10.0647 -1.3060 7.9171 49 1 9.3558 -0.8635 9.4901 50 1 8.6712 0.6893 7.6279 51 1 7.2896 -0.1268 8.3997 52 1 2.7083 -0.1984 2.1637 53 1 3.2994 1.1297 3.1912 54 1 2.6607 2.7673 1.4424 55 1 1.2570 1.8014 1.9563 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759164249.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:19 Heat of formation + Delta-G solvation = -112.374176 kcal Electronic energy + Delta-G solvation = -30085.578122 eV Core-core repulsion = 26120.887526 eV Total energy + Delta-G solvation = -3964.690596 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.15015 -40.12579 -39.45379 -37.22297 -36.35289 -34.49892 -33.15564 -32.59634 -31.86929 -31.63692 -29.11932 -27.71596 -27.03418 -25.42111 -24.27457 -23.60384 -22.93709 -22.38270 -21.24880 -20.72186 -20.49478 -18.78766 -17.91401 -17.31626 -17.18580 -16.88586 -16.77642 -16.37770 -16.23665 -15.91303 -15.40888 -15.17695 -15.15894 -15.07129 -14.85945 -14.56081 -14.44109 -14.12524 -13.92708 -13.79299 -13.52067 -13.39536 -13.23781 -12.99209 -12.90681 -12.80210 -12.54474 -12.30186 -12.24614 -12.11853 -12.09930 -11.96092 -11.73354 -11.58712 -11.47493 -11.31489 -11.26251 -11.19289 -10.95413 -10.73428 -10.60423 -10.26459 -9.97425 -8.91520 -8.16232 -5.47332 1.30436 1.41164 1.50709 1.75700 2.30905 2.42226 2.93829 3.06288 3.38061 3.74173 3.80159 3.81196 3.86109 3.89116 3.96900 4.02590 4.23476 4.25405 4.38496 4.43985 4.45717 4.50658 4.51518 4.55210 4.61310 4.65120 4.65411 4.69210 4.74487 4.75523 4.78404 4.86323 4.87509 4.90178 4.96354 5.01643 5.09789 5.11715 5.17570 5.18517 5.21731 5.22049 5.28032 5.32910 5.37899 5.46883 5.56417 5.63075 5.66845 5.87878 6.13171 6.35537 6.66431 6.93865 7.37342 7.64575 8.04538 9.03829 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.028603 B = 0.001841 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.677666 B =15207.493074 C =15504.751222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.087 3.913 4 C -0.115 4.115 5 C -0.105 4.105 6 C -0.066 4.066 7 C -0.131 4.131 8 C 0.506 3.494 9 O -0.582 6.582 10 N -0.719 5.719 11 C 0.136 3.864 12 C -0.079 4.079 13 C -0.117 4.117 14 C 0.141 3.859 15 N -0.622 5.622 16 C -0.247 4.247 17 H 0.048 0.952 18 C -0.040 4.040 19 N -0.960 5.960 20 Si 0.950 3.050 21 H -0.276 1.276 22 H -0.313 1.313 23 H -0.257 1.257 24 C 0.120 3.880 25 C -0.121 4.121 26 C -0.110 4.110 27 C -0.138 4.138 28 H 0.051 0.949 29 H 0.091 0.909 30 H 0.038 0.962 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.108 0.892 38 H 0.119 0.881 39 H 0.414 0.586 40 H 0.062 0.938 41 H 0.048 0.952 42 H 0.090 0.910 43 H 0.043 0.957 44 H 0.090 0.910 45 H 0.042 0.958 46 H 0.051 0.949 47 H 0.261 0.739 48 H 0.038 0.962 49 H 0.045 0.955 50 H 0.081 0.919 51 H 0.049 0.951 52 H 0.055 0.945 53 H 0.051 0.949 54 H 0.070 0.930 55 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.196 9.150 -31.824 34.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C 0.030 3.970 4 C -0.152 4.152 5 C -0.142 4.142 6 C -0.085 4.085 7 C -0.171 4.171 8 C 0.294 3.706 9 O -0.462 6.462 10 N -0.372 5.372 11 C 0.011 3.989 12 C -0.098 4.098 13 C -0.156 4.156 14 C 0.017 3.983 15 N -0.347 5.347 16 C -0.377 4.377 17 H 0.066 0.934 18 C -0.235 4.235 19 N -0.606 5.606 20 Si 0.779 3.221 21 H -0.203 1.203 22 H -0.242 1.242 23 H -0.182 1.182 24 C -0.005 4.005 25 C -0.161 4.161 26 C -0.147 4.147 27 C -0.176 4.176 28 H 0.069 0.931 29 H 0.110 0.890 30 H 0.057 0.943 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.126 0.874 38 H 0.137 0.863 39 H 0.251 0.749 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.109 0.891 43 H 0.062 0.938 44 H 0.109 0.891 45 H 0.060 0.940 46 H 0.070 0.930 47 H 0.069 0.931 48 H 0.056 0.944 49 H 0.063 0.937 50 H 0.099 0.901 51 H 0.068 0.932 52 H 0.073 0.927 53 H 0.069 0.931 54 H 0.088 0.912 55 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.385 9.697 -31.422 34.800 hybrid contribution 0.543 0.017 1.065 1.196 sum -10.843 9.714 -30.357 33.667 Atomic orbital electron populations 1.22893 0.80600 1.03351 1.00271 1.87894 1.20299 1.28372 1.95079 1.22203 0.95475 0.84429 0.94941 1.21646 0.93526 1.00825 0.99244 1.21457 0.99742 0.99463 0.93552 1.20852 0.94442 0.98404 0.94782 1.21793 1.02871 1.01271 0.91138 1.21334 0.77268 0.83857 0.88097 1.90658 1.52641 1.25213 1.77696 1.46022 1.49859 1.26477 1.14824 1.21192 0.98222 0.96859 0.82577 1.21173 0.98455 0.94551 0.95582 1.21945 0.97846 0.95279 1.00553 1.21142 0.95699 0.94977 0.86506 1.44507 1.70152 1.15945 1.04076 1.18867 1.07507 1.21604 0.89743 0.93381 1.25958 1.01700 1.00825 0.94978 1.69987 1.36472 1.54272 0.99869 0.85849 0.80796 0.77714 0.77704 1.20257 1.24165 1.18165 1.21384 0.95009 0.85522 0.98541 1.21895 0.99590 0.98481 0.96125 1.21488 0.95018 0.99234 0.98977 1.21976 0.99580 0.99500 0.96520 0.93091 0.89033 0.94286 0.91413 0.90011 0.90593 0.90419 0.91570 0.91938 0.87385 0.86261 0.74864 0.91963 0.93403 0.89149 0.93818 0.89125 0.94035 0.93036 0.93056 0.94441 0.93678 0.90082 0.93189 0.92651 0.93051 0.91183 0.92621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.82 113.37 1.23 1.51 16 2 O -0.40 -6.39 9.00 -148.98 -1.34 -7.74 16 3 C 0.09 1.20 2.92 30.59 0.09 1.29 16 4 C -0.12 -1.32 5.66 30.59 0.17 -1.15 16 5 C -0.10 -1.26 5.06 30.59 0.15 -1.11 16 6 C -0.07 -1.04 1.84 -10.79 -0.02 -1.06 16 7 C -0.13 -1.79 5.17 29.85 0.15 -1.64 16 8 C 0.51 10.77 7.55 87.66 0.66 11.43 16 9 O -0.58 -17.42 13.96 -3.03 -0.04 -17.46 16 10 N -0.72 -13.51 5.27 -463.07 -2.44 -15.95 16 11 C 0.14 3.22 5.06 86.38 0.44 3.66 16 12 C -0.08 -2.00 2.19 -10.76 -0.02 -2.02 16 13 C -0.12 -3.25 5.25 30.68 0.16 -3.09 16 14 C 0.14 5.06 6.52 86.36 0.56 5.63 16 15 N -0.62 -28.65 2.77 -699.07 -1.94 -30.59 16 16 C -0.25 -14.12 10.03 84.03 0.84 -13.27 16 17 H 0.05 3.02 8.06 -2.91 -0.02 2.99 16 18 C -0.04 -2.38 5.23 84.86 0.44 -1.93 16 19 N -0.96 -61.13 13.97 21.65 0.30 -60.83 16 20 Si 0.95 46.67 24.35 68.60 1.67 48.34 16 21 H -0.28 -12.82 6.62 99.48 0.66 -12.17 16 22 H -0.31 -15.66 7.11 99.48 0.71 -14.96 16 23 H -0.26 -11.89 6.63 99.48 0.66 -11.23 16 24 C 0.12 4.93 4.20 86.36 0.36 5.30 16 25 C -0.12 -3.90 5.36 30.67 0.16 -3.73 16 26 C -0.11 -2.16 4.80 30.59 0.15 -2.01 16 27 C -0.14 -2.31 5.63 30.59 0.17 -2.14 16 28 H 0.05 0.44 8.08 -2.39 -0.02 0.42 16 29 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.04 0.44 7.87 -2.39 -0.02 0.42 16 31 H 0.07 0.76 7.79 -2.38 -0.02 0.74 16 32 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.07 0.91 7.68 -2.39 -0.02 0.89 16 36 H 0.06 1.16 7.96 -2.39 -0.02 1.15 16 37 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.12 1.01 8.14 -2.38 -0.02 0.99 16 39 H 0.41 5.38 7.65 -92.70 -0.71 4.67 16 40 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.09 1.84 7.15 -2.39 -0.02 1.82 16 45 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.05 1.93 7.93 -2.39 -0.02 1.91 16 47 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 48 H 0.04 1.45 7.07 -2.39 -0.02 1.43 16 49 H 0.05 2.10 4.50 -2.39 -0.01 2.09 16 50 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 51 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 52 H 0.05 1.14 7.68 -2.39 -0.02 1.12 16 53 H 0.05 1.32 5.95 -2.39 -0.01 1.30 16 54 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 55 H 0.06 0.95 7.87 -2.39 -0.02 0.93 16 Total: -1.00 -74.12 408.50 1.96 -72.16 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.04 Total: 16.41 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: 5.71 Total: -4.34 kcal Atomic # 7 Polarization: -103.29 SS G_CDS: -4.07 Total: -107.37 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -1.38 Total: -25.19 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 1.67 Total: 48.34 kcal Total: -74.12 1.96 -72.16 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759164249.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.218 kcal (2) G-P(sol) polarization free energy of solvation -74.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds