Wall clock time and date at job start Tue Mar 31 2020 22:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42905 * 113.99844 * 2 1 4 4 C 1.53007 * 109.47229 * 209.99502 * 3 2 1 5 5 C 1.52998 * 109.47202 * 300.00347 * 4 3 2 6 6 C 1.53004 * 109.47168 * 299.99664 * 5 4 3 7 7 C 1.52998 * 109.47168 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.46958 * 175.00252 * 7 6 5 9 9 O 1.21277 * 120.00123 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99739 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99838 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47346 * 180.02562 * 11 10 8 13 13 H 1.09000 * 109.51848 * 305.07648 * 12 11 10 14 14 C 1.53036 * 109.49940 * 184.99913 * 12 11 10 15 15 C 1.53037 * 109.53839 * 178.67965 * 14 12 11 16 16 C 1.53196 * 109.31160 * 61.36690 * 15 14 12 17 17 N 1.46932 * 108.77447 * 305.36348 * 16 15 14 18 18 C 1.36933 * 120.63227 * 233.58897 * 17 16 15 19 19 H 1.08000 * 120.00106 * 151.83446 * 18 17 16 20 20 C 1.38815 * 119.99801 * 331.83419 * 18 17 16 21 21 N 1.31612 * 120.00090 * 343.07689 * 20 18 17 22 22 Si 1.86795 * 119.99858 * 163.07634 * 20 18 17 23 23 H 1.48497 * 109.47398 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47290 * 120.00195 * 22 20 18 25 25 H 1.48499 * 109.47370 * 239.99780 * 22 20 18 26 26 C 1.46924 * 118.73801 * 53.60831 * 17 16 15 27 27 C 1.53007 * 109.46785 * 60.00081 * 6 5 4 28 28 C 1.52998 * 109.47202 * 299.99899 * 27 6 5 29 29 H 1.09002 * 109.47109 * 60.00177 * 1 2 3 30 30 H 1.08998 * 109.46787 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47337 * 300.00146 * 1 2 3 32 32 H 1.08993 * 109.47024 * 329.99971 * 3 2 1 33 33 H 1.08995 * 109.46968 * 179.97438 * 4 3 2 34 34 H 1.09002 * 109.46840 * 59.99927 * 4 3 2 35 35 H 1.09000 * 109.47447 * 179.97438 * 5 4 3 36 36 H 1.08997 * 109.47189 * 59.99520 * 5 4 3 37 37 H 1.08995 * 109.47032 * 300.00531 * 6 5 4 38 38 H 1.09001 * 109.47410 * 55.00063 * 7 6 5 39 39 H 1.08999 * 109.47329 * 294.99896 * 7 6 5 40 40 H 0.97000 * 120.00112 * 0.02562 * 10 8 7 41 41 H 1.08991 * 109.47312 * 59.99703 * 11 10 8 42 42 H 1.09004 * 109.47238 * 299.99987 * 11 10 8 43 43 H 1.09003 * 109.45790 * 298.70122 * 14 12 11 44 44 H 1.09000 * 109.45981 * 58.67040 * 14 12 11 45 45 H 1.08996 * 109.49853 * 181.31152 * 15 14 12 46 46 H 1.09000 * 109.49859 * 301.38163 * 15 14 12 47 47 H 1.08995 * 109.58928 * 65.14840 * 16 15 14 48 48 H 1.09000 * 109.58658 * 185.58063 * 16 15 14 49 49 H 0.97004 * 120.00272 * 180.02562 * 21 20 18 50 50 H 1.08993 * 109.59213 * 186.60405 * 26 17 16 51 51 H 1.09005 * 109.58716 * 66.17778 * 26 17 16 52 52 H 1.08995 * 109.46968 * 60.00411 * 27 6 5 53 53 H 1.09004 * 109.46930 * 179.97438 * 27 6 5 54 54 H 1.08997 * 109.47189 * 300.00480 * 28 27 6 55 55 H 1.09003 * 109.46964 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3590 1.2634 -0.7212 5 6 4.2927 0.2893 0.0001 6 6 4.5001 0.7553 1.4426 7 6 5.4334 -0.2191 2.1641 8 6 5.7357 0.3040 3.5447 9 8 5.2527 1.3530 3.9149 10 7 6.5436 -0.3935 4.3676 11 6 6.8380 0.1152 5.7095 12 6 7.7722 -0.8586 6.4306 13 1 7.3304 -1.8550 6.4302 14 6 7.9805 -0.3928 7.8735 15 6 8.8884 -1.3840 8.6052 16 6 10.2529 -1.4296 7.9100 17 7 10.0488 -1.7350 6.4874 18 6 10.7084 -2.7794 5.8964 19 1 10.2674 -3.2881 5.0519 20 6 11.9440 -3.1842 6.3827 21 7 12.6341 -2.3876 7.1710 22 14 12.6271 -4.8596 5.9184 23 1 11.6646 -5.5574 5.0285 24 1 13.9212 -4.6877 5.2107 25 1 12.8384 -5.6660 7.1473 26 6 9.1239 -0.8983 5.7108 27 6 3.1513 0.7974 2.1638 28 6 2.2176 1.7714 1.4425 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.3449 1.9993 -0.5138 33 1 3.8020 2.2592 -0.7215 34 1 3.2112 0.9314 -1.7488 35 1 5.2534 0.2589 -0.5139 36 1 3.8494 -0.7064 0.0001 37 1 4.9434 1.7510 1.4426 38 1 6.3617 -0.3172 1.6014 39 1 4.9512 -1.1935 2.2423 40 1 6.9309 -1.2320 4.0711 41 1 5.9099 0.2133 6.2726 42 1 7.3200 1.0898 5.6310 43 1 8.4451 0.5932 7.8732 44 1 7.0172 -0.3403 8.3808 45 1 9.0175 -1.0642 9.6391 46 1 8.4359 -2.3754 8.5847 47 1 10.7459 -0.4626 8.0091 48 1 10.8692 -2.2048 8.3654 49 1 13.4976 -2.6703 7.5106 50 1 8.9953 -1.3227 4.7152 51 1 9.5249 0.1122 5.6306 52 1 2.7081 -0.1983 2.1638 53 1 3.2991 1.1289 3.1917 54 1 2.6609 2.7672 1.4425 55 1 1.2568 1.8018 1.9566 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760160164.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:56 Heat of formation + Delta-G solvation = -115.859928 kcal Electronic energy + Delta-G solvation = -30182.910495 eV Core-core repulsion = 26218.068746 eV Total energy + Delta-G solvation = -3964.841749 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.13464 -40.07360 -39.29123 -37.18850 -36.14385 -34.64143 -33.01251 -32.29475 -31.81108 -31.62341 -28.46495 -27.29844 -27.19352 -26.14118 -23.83692 -23.60208 -22.87503 -22.19381 -21.26754 -20.54351 -20.44312 -18.68273 -17.85091 -17.21759 -16.91404 -16.89146 -16.76859 -16.42368 -16.22645 -15.82387 -15.52940 -15.07997 -15.02168 -14.90317 -14.71052 -14.49259 -14.07285 -14.01009 -13.88878 -13.73310 -13.39570 -13.23726 -13.01144 -12.93561 -12.87344 -12.83813 -12.50664 -12.33568 -12.21759 -12.09603 -11.96025 -11.94193 -11.81808 -11.57908 -11.47293 -11.33158 -11.26421 -11.08890 -10.95199 -10.64103 -10.53707 -10.25751 -9.96316 -8.67141 -7.86183 -5.32187 1.46814 1.49047 1.59123 1.75008 2.33004 2.51665 2.94902 3.28714 3.60813 3.74650 3.81111 3.87278 3.99393 4.01193 4.02553 4.09230 4.23855 4.25435 4.40719 4.45069 4.51497 4.51970 4.58978 4.61124 4.64230 4.66292 4.69293 4.74982 4.78134 4.84957 4.88229 4.89449 4.92033 4.96989 5.01996 5.10203 5.10550 5.18229 5.21756 5.24545 5.32885 5.33913 5.37754 5.41410 5.50637 5.56889 5.61098 5.66188 5.68007 5.78347 6.37016 6.39834 6.64409 7.15549 7.34626 7.86902 8.39266 9.20247 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017692 B = 0.002045 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.292347 B =13689.461217 C =14635.273919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.398 6.398 3 C 0.088 3.912 4 C -0.115 4.115 5 C -0.106 4.106 6 C -0.065 4.065 7 C -0.134 4.134 8 C 0.508 3.492 9 O -0.579 6.579 10 N -0.723 5.723 11 C 0.139 3.861 12 C -0.099 4.099 13 H 0.076 0.924 14 C -0.098 4.098 15 C -0.130 4.130 16 C 0.173 3.827 17 N -0.610 5.610 18 C -0.258 4.258 19 H 0.072 0.928 20 C -0.055 4.055 21 N -0.937 5.937 22 Si 0.966 3.034 23 H -0.263 1.263 24 H -0.295 1.295 25 H -0.292 1.292 26 C 0.153 3.847 27 C -0.108 4.108 28 C -0.137 4.137 29 H 0.050 0.950 30 H 0.091 0.909 31 H 0.041 0.959 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.410 0.590 41 H 0.067 0.933 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.078 0.922 45 H 0.068 0.932 46 H 0.053 0.947 47 H -0.008 1.008 48 H 0.051 0.949 49 H 0.248 0.752 50 H 0.058 0.942 51 H 0.004 0.996 52 H 0.056 0.944 53 H 0.054 0.946 54 H 0.069 0.931 55 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.303 5.650 -13.619 27.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.317 6.317 3 C 0.030 3.970 4 C -0.152 4.152 5 C -0.143 4.143 6 C -0.084 4.084 7 C -0.173 4.173 8 C 0.297 3.703 9 O -0.459 6.459 10 N -0.375 5.375 11 C 0.014 3.986 12 C -0.120 4.120 13 H 0.094 0.906 14 C -0.136 4.136 15 C -0.169 4.169 16 C 0.047 3.953 17 N -0.333 5.333 18 C -0.388 4.388 19 H 0.089 0.911 20 C -0.250 4.250 21 N -0.583 5.583 22 Si 0.795 3.205 23 H -0.187 1.187 24 H -0.222 1.222 25 H -0.219 1.219 26 C 0.027 3.973 27 C -0.146 4.146 28 C -0.175 4.175 29 H 0.069 0.931 30 H 0.109 0.891 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.129 0.871 39 H 0.126 0.874 40 H 0.247 0.753 41 H 0.086 0.914 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.097 0.903 45 H 0.087 0.913 46 H 0.072 0.928 47 H 0.010 0.990 48 H 0.070 0.930 49 H 0.058 0.942 50 H 0.077 0.923 51 H 0.022 0.978 52 H 0.075 0.925 53 H 0.072 0.928 54 H 0.088 0.912 55 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -23.379 6.188 -13.300 27.600 hybrid contribution 1.000 -0.757 0.196 1.270 sum -22.379 5.431 -13.104 26.496 Atomic orbital electron populations 1.22898 0.80546 1.03346 1.00335 1.87901 1.20373 1.28361 1.95086 1.22193 0.95277 0.84457 0.95034 1.21645 0.93664 1.00700 0.99239 1.21458 0.99640 0.99575 0.93654 1.20850 0.94647 0.98198 0.94749 1.21800 1.02707 1.01460 0.91349 1.21255 0.77284 0.83846 0.87941 1.90632 1.52877 1.24770 1.77622 1.46124 1.49537 1.26450 1.15415 1.21193 0.98122 0.96625 0.82633 1.21703 0.95419 0.98944 0.95899 0.90575 1.21342 0.99683 0.98276 0.94281 1.22000 0.96893 0.99191 0.98821 1.20627 0.93608 0.97023 0.84015 1.44324 1.49592 1.33564 1.05783 1.19571 0.98237 1.06809 1.14196 0.91075 1.25834 0.96171 1.01911 1.01080 1.70204 1.12988 1.36219 1.38926 0.85217 0.77811 0.80171 0.77314 1.18682 1.22186 1.21929 1.21022 0.89136 0.92777 0.94340 1.21478 0.94665 0.99356 0.99053 1.21974 0.99653 0.99439 0.96409 0.93148 0.89060 0.94081 0.91238 0.90057 0.90638 0.90901 0.91537 0.92028 0.87068 0.87363 0.75340 0.91424 0.92907 0.92791 0.90307 0.91325 0.92791 0.99017 0.93046 0.94242 0.92320 0.97804 0.92536 0.92755 0.91187 0.92226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.82 113.37 1.23 1.52 16 2 O -0.40 -6.80 9.00 -148.98 -1.34 -8.14 16 3 C 0.09 1.31 2.92 30.60 0.09 1.40 16 4 C -0.12 -1.58 5.66 30.60 0.17 -1.40 16 5 C -0.11 -1.61 5.06 30.59 0.15 -1.45 16 6 C -0.07 -1.24 1.84 -10.79 -0.02 -1.26 16 7 C -0.13 -2.43 5.17 29.85 0.15 -2.28 16 8 C 0.51 12.90 7.54 87.66 0.66 13.56 16 9 O -0.58 -18.73 13.97 -3.02 -0.04 -18.77 16 10 N -0.72 -17.75 5.33 -463.06 -2.47 -20.22 16 11 C 0.14 3.82 5.07 86.38 0.44 4.25 16 12 C -0.10 -3.07 2.37 -10.71 -0.03 -3.10 16 13 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 14 C -0.10 -3.02 5.17 30.62 0.16 -2.86 16 15 C -0.13 -4.74 6.08 30.67 0.19 -4.55 16 16 C 0.17 8.32 5.30 86.36 0.46 8.78 16 17 N -0.61 -29.92 2.99 -699.09 -2.09 -32.01 16 18 C -0.26 -13.82 9.58 84.03 0.81 -13.02 16 19 H 0.07 3.65 7.88 -2.91 -0.02 3.62 16 20 C -0.05 -3.04 4.92 84.86 0.42 -2.62 16 21 N -0.94 -55.54 11.20 21.65 0.24 -55.29 16 22 Si 0.97 44.28 29.59 68.60 2.03 46.31 16 23 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 24 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 25 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 26 C 0.15 6.02 5.60 86.36 0.48 6.50 16 27 C -0.11 -2.26 4.80 30.60 0.15 -2.12 16 28 C -0.14 -2.40 5.63 30.59 0.17 -2.23 16 29 H 0.05 0.46 8.09 -2.39 -0.02 0.44 16 30 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.04 0.46 7.87 -2.39 -0.02 0.44 16 32 H 0.07 0.84 7.79 -2.39 -0.02 0.82 16 33 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.07 1.10 7.68 -2.39 -0.02 1.08 16 37 H 0.06 1.35 7.95 -2.39 -0.02 1.33 16 38 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.41 8.80 7.71 -92.71 -0.71 8.09 16 41 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 43 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 46 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 47 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 48 H 0.05 2.81 6.06 -2.39 -0.01 2.80 16 49 H 0.25 14.27 8.31 -92.71 -0.77 13.49 16 50 H 0.06 2.17 7.14 -2.39 -0.02 2.15 16 51 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 52 H 0.06 1.22 7.68 -2.39 -0.02 1.20 16 53 H 0.05 1.43 5.95 -2.38 -0.01 1.42 16 54 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 55 H 0.06 1.01 7.87 -2.39 -0.02 0.99 16 Total: -1.00 -67.99 415.19 2.13 -65.85 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: 0.12 Total: 23.13 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: 5.68 Total: -0.86 kcal Atomic # 7 Polarization: -103.20 SS G_CDS: -4.32 Total: -107.52 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -1.38 Total: -26.91 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -67.99 2.13 -65.85 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760160164.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.006 kcal (2) G-P(sol) polarization free energy of solvation -67.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds