Wall clock time and date at job start Tue Mar 31 2020 23:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.46648 * 2 1 4 4 N 1.29391 * 125.58816 * 359.97438 * 3 2 1 5 5 N 1.40173 * 108.14386 * 179.78046 * 4 3 2 6 6 C 1.46493 * 126.35489 * 180.25657 * 5 4 3 7 7 N 1.46901 * 109.46987 * 285.12297 * 6 5 4 8 8 C 1.46905 * 111.00050 * 278.95340 * 7 6 5 9 9 C 1.50700 * 109.47312 * 167.81773 * 8 7 6 10 10 H 1.08000 * 119.99572 * 4.21980 * 9 8 7 11 11 C 1.37878 * 120.00118 * 184.21770 * 9 8 7 12 12 N 1.31512 * 119.99905 * 184.97476 * 11 9 8 13 13 Si 1.86795 * 119.99966 * 4.96814 * 11 9 8 14 14 H 1.48506 * 109.47038 * 90.00161 * 13 11 9 15 15 H 1.48497 * 109.47487 * 210.00119 * 13 11 9 16 16 H 1.48506 * 109.47405 * 330.00238 * 13 11 9 17 17 C 1.46902 * 111.00290 * 155.00084 * 7 6 5 18 18 C 1.52995 * 109.46933 * 284.79797 * 17 7 6 19 19 C 1.52996 * 109.47079 * 174.39695 * 18 17 7 20 20 C 1.53000 * 109.47336 * 184.99776 * 19 18 17 21 21 C 1.53005 * 109.47236 * 294.39851 * 18 17 7 22 22 C 1.52995 * 109.47087 * 65.33643 * 21 18 17 23 23 C 1.34946 * 107.29752 * 0.35693 * 5 4 3 24 24 O 1.21809 * 126.30773 * 179.90695 * 23 5 4 25 25 N 1.34817 * 107.39321 * 359.64889 * 23 5 4 26 26 C 1.46498 * 125.83361 * 180.24542 * 25 23 5 27 27 C 1.53000 * 109.47165 * 89.97594 * 26 25 23 28 28 H 1.08992 * 109.47683 * 299.99806 * 1 2 3 29 29 H 1.08999 * 109.46954 * 60.00178 * 1 2 3 30 30 H 1.09002 * 109.47221 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47041 * 240.00035 * 2 1 3 32 32 H 1.08999 * 109.46954 * 119.99822 * 2 1 3 33 33 H 1.08999 * 109.47358 * 45.12179 * 6 5 4 34 34 H 1.08997 * 109.47632 * 165.12562 * 6 5 4 35 35 H 1.08998 * 109.47221 * 287.82327 * 8 7 6 36 36 H 1.08998 * 109.47213 * 47.82100 * 8 7 6 37 37 H 0.97004 * 119.99932 * 180.02562 * 12 11 9 38 38 H 1.09001 * 109.47170 * 44.79533 * 17 7 6 39 39 H 1.08997 * 109.47235 * 164.79877 * 17 7 6 40 40 H 1.09005 * 109.47185 * 54.40005 * 18 17 7 41 41 H 1.08995 * 109.47405 * 305.00198 * 19 18 17 42 42 H 1.09004 * 109.47001 * 65.00105 * 19 18 17 43 43 H 1.09002 * 109.47426 * 180.02562 * 20 19 18 44 44 H 1.09001 * 109.47640 * 300.00597 * 20 19 18 45 45 H 1.09004 * 109.46806 * 60.00210 * 20 19 18 46 46 H 1.09000 * 109.47133 * 185.33447 * 21 18 17 47 47 H 1.08994 * 109.47042 * 305.33658 * 21 18 17 48 48 H 1.09007 * 109.47066 * 53.00057 * 22 21 18 49 49 H 1.08994 * 109.47244 * 173.00006 * 22 21 18 50 50 H 1.09002 * 109.47186 * 293.00267 * 22 21 18 51 51 H 1.09003 * 109.47417 * 209.97394 * 26 25 23 52 52 H 1.08996 * 109.47120 * 329.97862 * 26 25 23 53 53 H 1.08998 * 109.47109 * 299.99840 * 27 26 25 54 54 H 1.08999 * 109.47339 * 59.99888 * 27 26 25 55 55 H 1.09004 * 109.47373 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 1.2911 2.4815 -0.0005 5 7 2.1329 3.6023 0.0048 6 6 1.7111 5.0051 0.0115 7 7 1.2240 5.3763 -1.3238 8 6 2.3421 5.6899 -2.2237 9 6 1.8381 5.7718 -3.6415 10 1 0.7820 5.6751 -3.8456 11 6 2.7252 5.9702 -4.6782 12 7 2.2778 6.1395 -5.9032 13 14 4.5626 5.9987 -4.3426 14 1 5.1098 4.6237 -4.4666 15 1 5.2317 6.8882 -5.3255 16 1 4.8071 6.5067 -2.9687 17 6 0.2798 6.4990 -1.2466 18 6 -1.0657 5.9982 -0.7177 19 6 -2.0046 7.1873 -0.5049 20 6 -3.3043 6.7019 0.1401 21 6 -1.6853 5.0341 -1.7314 22 6 -0.8122 3.7829 -1.8449 23 6 3.4041 3.1493 0.0004 24 8 4.4130 3.8319 0.0013 25 7 3.3519 1.8022 0.0006 26 6 4.5055 0.8992 0.0016 27 6 4.9063 0.5855 1.4445 28 1 -0.3634 0.5137 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.9121 5.1409 0.7403 34 1 2.5576 5.6379 0.2782 35 1 2.7811 6.6458 -1.9383 36 1 3.0973 4.9072 -2.1512 37 1 2.9020 6.2787 -6.6326 38 1 0.6743 7.2600 -0.5732 39 1 0.1431 6.9278 -2.2393 40 1 -0.9140 5.4810 0.2298 41 1 -1.5252 7.9165 0.1480 42 1 -2.2271 7.6511 -1.4660 43 1 -3.9734 7.5490 0.2912 44 1 -3.7838 5.9726 -0.5129 45 1 -3.0818 6.2382 1.1011 46 1 -2.6844 4.7511 -1.4000 47 1 -1.7496 5.5217 -2.7041 48 1 -0.6454 3.3649 -0.8521 49 1 -1.3145 3.0448 -2.4701 50 1 0.1455 4.0475 -2.2932 51 1 4.2433 -0.0259 -0.5119 52 1 5.3404 1.3758 -0.5119 53 1 5.1685 1.5105 1.9580 54 1 4.0714 0.1089 1.9581 55 1 5.7649 -0.0860 1.4453 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842594638.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:30 Heat of formation + Delta-G solvation = 20.100499 kcal Electronic energy + Delta-G solvation = -32564.005814 eV Core-core repulsion = 28637.352503 eV Total energy + Delta-G solvation = -3926.653311 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.39412 -39.76945 -38.50991 -37.05995 -36.11434 -34.76338 -34.48765 -32.30936 -32.12051 -30.56839 -30.23515 -28.66631 -26.67844 -25.29912 -24.67586 -24.32455 -23.35727 -22.24779 -21.80798 -21.38239 -20.59800 -19.17473 -18.41856 -17.90704 -17.09721 -16.87767 -16.51772 -16.29459 -16.10073 -15.74082 -15.35752 -15.31102 -15.03052 -14.90856 -14.57637 -14.35222 -14.30675 -14.13489 -13.76278 -13.49200 -13.41868 -13.24160 -13.15701 -13.08435 -12.81168 -12.72519 -12.71926 -12.60641 -12.37011 -12.25300 -12.17468 -12.13457 -11.92696 -11.87238 -11.71582 -11.59307 -11.34766 -11.25595 -11.12671 -11.04286 -10.89540 -10.80018 -9.50343 -8.93475 -8.35771 -6.34888 0.83201 1.15136 1.19225 1.22323 1.35118 1.62164 2.14732 2.23515 2.94650 3.02485 3.48565 3.66837 3.89540 3.92638 4.06164 4.07925 4.12217 4.13650 4.25716 4.34798 4.43748 4.48096 4.56998 4.62186 4.65613 4.67690 4.70246 4.72635 4.76753 4.90266 4.93180 4.93687 4.96149 5.04936 5.13254 5.15531 5.18584 5.20379 5.21956 5.22512 5.23329 5.31291 5.44908 5.46747 5.53487 5.55735 5.59653 5.73852 5.84312 5.88663 6.24465 6.28623 6.46275 6.71412 6.78380 7.04070 7.27224 8.79897 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.007481 B = 0.005682 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3742.137092 B = 4926.625354 C = 7276.962275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.037 4.037 3 C 0.267 3.733 4 N -0.271 5.271 5 N -0.439 5.439 6 C 0.318 3.682 7 N -0.524 5.524 8 C 0.181 3.819 9 C -0.498 4.498 10 H 0.055 0.945 11 C 0.024 3.976 12 N -0.935 5.935 13 Si 0.927 3.073 14 H -0.279 1.279 15 H -0.272 1.272 16 H -0.271 1.271 17 C 0.071 3.929 18 C -0.069 4.069 19 C -0.117 4.117 20 C -0.145 4.145 21 C -0.096 4.096 22 C -0.146 4.146 23 C 0.626 3.374 24 O -0.609 6.609 25 N -0.552 5.552 26 C 0.113 3.887 27 C -0.158 4.158 28 H 0.057 0.943 29 H 0.042 0.958 30 H 0.091 0.909 31 H 0.112 0.888 32 H 0.127 0.873 33 H 0.122 0.878 34 H 0.056 0.944 35 H -0.021 1.021 36 H 0.001 0.999 37 H 0.267 0.733 38 H 0.039 0.961 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.051 0.949 43 H 0.061 0.939 44 H 0.054 0.946 45 H 0.059 0.941 46 H 0.066 0.934 47 H 0.026 0.974 48 H 0.068 0.932 49 H 0.012 0.988 50 H 0.070 0.930 51 H 0.132 0.868 52 H 0.070 0.930 53 H 0.031 0.969 54 H 0.079 0.921 55 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.892 -14.215 18.217 23.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.077 4.077 3 C -0.011 4.011 4 N -0.093 5.093 5 N -0.259 5.259 6 C 0.107 3.893 7 N -0.249 5.249 8 C 0.054 3.946 9 C -0.537 4.537 10 H 0.073 0.927 11 C -0.175 4.175 12 N -0.576 5.576 13 Si 0.753 3.247 14 H -0.205 1.205 15 H -0.197 1.197 16 H -0.195 1.195 17 C -0.057 4.057 18 C -0.088 4.088 19 C -0.155 4.155 20 C -0.202 4.202 21 C -0.134 4.134 22 C -0.204 4.204 23 C 0.325 3.675 24 O -0.487 6.487 25 N -0.280 5.280 26 C -0.007 4.007 27 C -0.216 4.216 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.110 0.890 31 H 0.130 0.870 32 H 0.145 0.855 33 H 0.140 0.860 34 H 0.074 0.926 35 H -0.003 1.003 36 H 0.019 0.981 37 H 0.076 0.924 38 H 0.057 0.943 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.070 0.930 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.078 0.922 46 H 0.084 0.916 47 H 0.045 0.955 48 H 0.087 0.913 49 H 0.031 0.969 50 H 0.088 0.912 51 H 0.150 0.850 52 H 0.088 0.912 53 H 0.051 0.949 54 H 0.098 0.902 55 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.332 -13.634 17.842 23.080 hybrid contribution 2.481 1.077 -0.542 2.758 sum -2.851 -12.557 17.301 21.567 Atomic orbital electron populations 1.21586 0.92563 1.03280 1.02351 1.20484 0.97892 0.82937 1.06361 1.25228 0.79735 0.99218 0.96927 1.76941 1.17710 0.90423 1.24245 1.49167 1.03265 1.06175 1.67296 1.21816 0.99118 0.75738 0.92637 1.61843 1.15979 1.39056 1.08028 1.19827 0.89549 0.92696 0.92502 1.21114 0.95057 1.47600 0.89893 0.92677 1.25509 1.02082 0.94895 0.94978 1.69997 1.36063 1.51102 1.00439 0.86051 0.82130 0.78310 0.78252 1.20541 1.19705 1.19539 1.22112 0.92183 0.90346 1.01010 1.21173 0.92764 0.96310 0.98571 1.21514 0.96244 0.96937 1.00794 1.21751 0.96451 1.01341 1.00634 1.21347 0.98462 0.96268 0.97301 1.22002 1.00988 0.95584 1.01794 1.17175 0.84961 0.83510 0.81837 1.90994 1.34372 1.61827 1.61498 1.46237 1.08811 1.06058 1.66879 1.21960 0.85230 0.93170 1.00364 1.22100 1.03693 1.01737 0.94049 0.92394 0.93847 0.89018 0.86998 0.85549 0.85999 0.92570 1.00328 0.98102 0.92406 0.94282 0.92036 0.90663 0.91415 0.92977 0.91978 0.92719 0.92171 0.91567 0.95469 0.91312 0.96857 0.91159 0.85013 0.91176 0.94947 0.90227 0.87963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.37 71.98 0.67 -1.28 16 2 C -0.04 -0.48 5.90 29.85 0.18 -0.31 16 3 C 0.27 6.65 7.70 137.69 1.06 7.71 16 4 N -0.27 -8.47 9.77 -49.60 -0.48 -8.95 16 5 N -0.44 -16.41 3.74 -487.63 -1.82 -18.23 16 6 C 0.32 11.71 6.04 170.81 1.03 12.74 16 7 N -0.52 -22.00 1.09 -913.17 -1.00 -23.00 16 8 C 0.18 9.46 3.61 85.56 0.31 9.77 16 9 C -0.50 -29.60 8.52 25.60 0.22 -29.38 16 10 H 0.06 3.55 7.36 -2.91 -0.02 3.53 16 11 C 0.02 1.44 5.47 84.66 0.46 1.91 16 12 N -0.94 -59.51 13.96 21.45 0.30 -59.21 16 13 Si 0.93 48.89 27.37 68.60 1.88 50.76 16 14 H -0.28 -14.69 7.11 99.48 0.71 -13.98 16 15 H -0.27 -13.59 7.11 99.48 0.71 -12.88 16 16 H -0.27 -14.37 6.73 99.48 0.67 -13.70 16 17 C 0.07 2.64 4.12 86.30 0.36 2.99 16 18 C -0.07 -2.05 2.03 -10.79 -0.02 -2.08 16 19 C -0.12 -2.86 5.40 30.59 0.17 -2.70 16 20 C -0.14 -2.87 9.67 71.98 0.70 -2.18 16 21 C -0.10 -3.18 5.27 30.59 0.16 -3.02 16 22 C -0.15 -5.43 8.78 71.98 0.63 -4.80 16 23 C 0.63 24.87 8.15 178.99 1.46 26.33 16 24 O -0.61 -28.99 17.55 -4.70 -0.08 -29.08 16 25 N -0.55 -15.92 2.74 -645.38 -1.77 -17.69 16 26 C 0.11 2.24 6.54 86.38 0.56 2.80 16 27 C -0.16 -2.34 10.24 71.98 0.74 -1.60 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.12 3.68 6.39 -2.39 -0.02 3.67 16 34 H 0.06 2.21 7.65 -2.39 -0.02 2.19 16 35 H -0.02 -1.12 7.67 -2.39 -0.02 -1.14 16 36 H 0.00 0.05 6.53 -2.39 -0.02 0.03 16 37 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 38 H 0.04 1.32 8.01 -2.39 -0.02 1.30 16 39 H 0.06 2.72 6.67 -2.39 -0.02 2.71 16 40 H 0.08 2.07 6.65 -2.38 -0.02 2.05 16 41 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.05 1.12 6.46 -2.39 -0.02 1.11 16 45 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.07 1.86 6.33 -2.39 -0.02 1.84 16 47 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.07 2.36 6.24 -2.38 -0.01 2.34 16 49 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 50 H 0.07 3.25 5.04 -2.39 -0.01 3.23 16 51 H 0.13 1.50 7.79 -2.39 -0.02 1.48 16 52 H 0.07 1.71 8.08 -2.39 -0.02 1.69 16 53 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 54 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 55 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 Total: -1.00 -81.16 423.11 6.51 -74.65 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 0.81 Total: 13.83 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: 8.68 Total: 16.92 kcal Atomic # 7 Polarization: -122.31 SS G_CDS: -4.77 Total: -127.08 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -0.08 Total: -29.08 kcal Atomic # 14 Polarization: 48.89 SS G_CDS: 1.88 Total: 50.76 kcal Total: -81.16 6.51 -74.65 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842594638.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.750 kcal (2) G-P(sol) polarization free energy of solvation -81.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds